TCONS_00064745-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064745-protein
Unique NameTCONS_00064745-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064745-protein ID=TCONS_00064745-protein|Name=TCONS_00064745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MTMSNGPLLHYHPSEEHQQTFTSQAHPLNHEGGNTPPSTRPDVCFNNSNN
YTTFFHDHHTSHSTLMTSLQETDEDEVKRPMNSFLLWAKIMRKQYASKNP
NMHNAEISKLLGKIWNSMTTKDKRPYVEQAERLRVVHMRTYPNYRYAPKR
RKERRNHRMISPEVAAALHNTLFDVNNIINEQISQTDVLSQNLKSYGYLR
SAFQQNRNKNIGNVSDSHSDSSFSRCNTASPLPCSEQSFSSASSCEYQLQ
LPAENQIATEPAKNHTESMTLHYRPVTNTNCAATTFTQQSQTQTVDYFSS
SSSESNDSGAEDDTNSSIEDEFSNYLKHITSSRNTASGLVENDDDSFFWN
DITDIITSGSL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040606XLOC_040606Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064745TCONS_00064745Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 76..146
e-value: 9.5E-26
score: 101.5
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 70..306
e-value: 4.0E-27
score: 94.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 77..145
e-value: 3.9E-24
score: 84.7
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 77..145
score: 20.358
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 64..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 297..317
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 76..146
e-value: 3.98165E-28
score: 103.917

Blast
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BLAST of TCONS_00064745-protein vs. Swiss-Prot (Human)
Match: SOX18 (Transcription factor SOX-18 OS=Homo sapiens GN=SOX18 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.329e-30
Identity = 47/89 (52.81%), Postives = 68/89 (76.40%), Query Frame = 0 
Query:   70 QETDEDEVKRPMNSFLLWAKIMRKQYASKNPNMHNAEISKLLGKIWNSMTTKDKRPYVEQAERLRVVHMRTYPNYRYAPKRRKERRNHR 158
            Q  DE  ++RPMN+F++WAK  RK+ A +NP++HNA +SK+LGK W  +   +KRP+VE+AERLRV H+R +PNY+Y P+R+K+ R  R
Sbjct:   78 QAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKAR 166
The following BLAST results are available for this feature:
BLAST of TCONS_00064745-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX185.329e-3052.81Transcription factor SOX-18 OS=Homo sapiens GN=SOX... [more]
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