XLOC_040597 (gene) - C. hemisphaerica

Overview
NameXLOC_040597
Unique NameXLOC_040597
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_423:101424..108383+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040597 ID=XLOC_040597|Name=XLOC_040597|organism=Clytia hemisphaerica|type=gene|length=6960bp|location=Sequence derived from alignment at scaffold_423:101424..108383+ (Clytia hemisphaerica)
GTTCTTTTCACACAGTTGTTTTCTATAATCATTGATTTGTTACTACTTTT TCACACTATTTTTTAGtgtaaatttacttttttggttgatattttcaaga tttcttggGACGTCGAAGACTTGGtgaaaaaaggtaattttttgtttgtt ttttatttaacaagatggggaaatatttttgggagAAAAGAAGATTACTG TACTGTTCAGCGTTGTGAGCCTTCTTTTCTGTGAAAGCGTATTTTTAAAG GGGGAGTAGGCGATGATTTTAAGCAAGGTTGCTTCATATATTGAAAGGGT TTTCAACGCGCCTGCTAAGAAATCGTGTCAATGCGCTTATTTCTAGGGGT TACATACCAACCATGAAACTTAAAAATGACGAAAAAGAACTAGATTCCGT AAGATGTTGAAATTGGCGTGTCAATAACGTTGTtgtttgtttttcgaaat taaaCGTGAGAAAGAGGAACCCTTTGCAGTCGCACTTTGTGCTTCAGGGG CTTCATTAAAACATAACCATTAGAACAGTTCGATATTATTTTGATCTTTC TGAGAGGAAGGAATCTGGGTAGGATGAAGTTGAAAAGTGACAAGAATATT TTCACCTGAAATTACAATAATCTGATTCTCAACGGAAGACTCGggtcaaa aatgttaaaaactggCAATTTTACTTCTCGTATTTCttgtcaaaaaatgt tatttttcaaatgtaaatctattcttgtttgaaatgtttcaaGTTTCAAA CTGTTTAGCTTATTAAAGTGCgtttaaaaaagttaataaaGCTCACTCAC CCTTATAAACAGTAATTTGAAAACAGCTTTAACTGGAATATAACCCCCTG TTTTAGATTTAATATACGtaggttttcttcttcaatttctacATTTTCAG GGGGTTTGGTTTTTTAAACCACCAAAACAGAACAGTGTTTAGCCATTAAA CCGTAACGTTATTCTTTCGAAACTTTTTCCCAaactttgttcaatttttt gattttcttgaatttttttttgaaattgtgttCTGGTTGTATTGGTTAtt ttggttgaaaaagtttaaaaaaacaatttgttttgttttttttttaaact tttaataatTTTGCTGGAACTCAACGCTCATTTTAAGAGAAGGTATGAGG AATTATtccattcttttttgaaaataaacggagaaactttttttccaaat aattaaagtttcttgatttttcaaggtaTGATACCGCTCTGCCACTCTGT CAATTATAATATTTAGTATTCCGTTGAATTTAAAGGTAAGACGTCTGAGA GTAGGGGATTAATAATAATGCCAGAAATGTTTTATCCGTATTCCTTCCAT GTATTGAAATCAATAATATCTTCCATCGTTCTTTTTAAATCAGAAATAGT TTGCAAGGAGGcttgacgtccagggtggtctggaaaataaaaaatccagg ggtctggtctggtttttcgagtgtaaaaatccagggtgttCAGTTAAAac agggttcagacagaccctggaaaacctggaaatatgataaattttcagaa aaatcagggaaactcagggaaactcagggaaacccagggaaaaaattttt tttcccagtctgctcagggaaactgagggaattttatttgttgaagaatg aatggaaaaaacagatttaaaagtttttttagttttaaagtgtTTATTCA TATGCAGTATTTGTAGCTTTAATTTTTACCTTAGGTTTACCATTTGATTT GTGTGCCTTTTGTTTAAAGATACATCTCTTTCGACTATGcttagttttta tggtttgcttgatactcagggaaaaaatagggaaaaaatagctaaaatga ggaatttctcagggaaaaaacctttgaaaattgattaaaattcagggaaa ctcagggaattttattttcgaaggtctgtctgaaccctgtaAAATTAAGT GCAAAActagggtggtcagtaaaacggaGTCGAAAATCTAGGGTGGTCCA AAAATACGAAGAAAAAATCATAGGGGGGtcttgaaaaattagaaaaatgc aGGGGATCGAATGGAAGATTAAAAATAATACCAAAACTGTTTTATCCATA CTCTAAGGTCCAGAACAACCTGGTTTTAGTCTATAATCACCCTTTTTTGG GTGGTTACGAGGTACAATTTCCCGACAATTTCCAAACCCTTGGCAATTAG GTCCTCCCTcccgtttattatattttgtaaaatttcggaCATCCTTACTA TCAGTAGCGTGGCGGGTCGACTAAAACTTAGGAGGCAATTTCGAAAGTTG GGATATTGGCGCTCCTTTTTAATTAACCACGAAAAAGTTTTGGGTACTTT TCTCATTTTGGCCTAAAACAGCCAATTCTAAGTTGTAATATAAAGCAAAA GGGCGTAAAAATGAGTAATCAAAGGTGCCTTTTTTCATCCCTTTGGGGGG TTGCAGTTACCCCGTTTAGAGCAGTTTAGCTTTTTAGAGCAGTTTAGACC GGttaattacaattttttcatgcCTTGTACGGCCCAATTTCGCCGTTTGC CGGCTAAATAAGGTCCctgaataaataaatgaaatgcCTTAATCCTGGCT TTGTGTTTTATATCTTGCTTAAGTTGGATAACTGACAAGGGAACATCTAT CAATGTTGTTGAAAATACAATGTATTGCAGTGCTGGGTGTATATTTCTAA AGGATAATCCTTTCTTATCTTTTTCCCGAGGAAAACAATCAAATTTTTCT GTTGTCTAACTTTCCCAAGTGGAGAtaatgaagatttttcaaaaaatgga tttttataACGTTCTTCAATTGATATTTGATCGTTTGTTTTGTTAAAATA GAACGGCCGAAGTTAACTTAGCCAAAAATTAATTCGATGGAGATAAAATA ACTGTTCATTGGATAACTGCGAGTTTTTGTGAAAGTTGGATTAACAGATC CATTTACTTCCAAGTCCAAAGGGCTAGACTCAAGACTCCTGGATGATAAA TAAAGCCACTTTTTCCCCATttagaacgcccgcgcgtggtttttacacaa acgccggattgaaagtaaaatctatcgctagatttaaaaaaatgcaatcc tcaaaaacaaaggaaccgctagatacaatccgtcgtcatgattgcggtgc gttctagatgggaaataagcgacctcactttttcttgcctgcgaaaggtt agagattgggcttttccagaaaaaaaaccgtacaccccctattgaggagc tccaaccttttgtgaattacccccttggaattccaggcaattttaggatc atacccctctggaattccgaatttttacagattttcattcattcattctt acccccatggaattccacttatttttgacggatttttgtctactgctatg gaattccactgcatttcaaaccatacccccttggaatggaaatggactcc tcaacagggggtgcacggtttttttctggaaaagcccattcttctctagc cctttgggcttcaAACTCGAGCAGATCCAACGAAGGCTGTCAACATCCCC TCTAATTGATATGTTTTGTGATGTAATGTGATGTGTTTTGAGGTGGGAGT CTTTTAAATTATCAGAATctgaaagaggaaaaatataCCACAAAAAACCT GCTTAACAAATTGTTTTCGGGTCTGAATTGCCTCCCTCATGACAATAACT CTTTTCAGGAATGCGATCAAACTAGACCATGGAAAATTATCTTTTCGAAT AACCAGGGGTTTCTTCtaataatttcttcttttattttttagatgATGAC GGGTCAAATATTGTGTAGCTGTTTGGTGCTTAATCTAATAGTGCTTATAG TAAGTGTTTTCTTTATCTTCACGTCCTGAAGGTTGGAAGTCGCTTGGGTA AATGAAGGGGTACGGGAATGTACACTCAAAAGGCTAAATTCCAGGAAAAA GCTCCGATAAGGGTCTTAAAATTCCTAATTTCTCTGATTTGTTCTCTATT TTGGCCCttattttccaatattttttatttttccatattttctCAAAGAT TGTATACAAGTACTATTTAACttcaatcaaagtcataatatttgagaaaa aagagaaattcccacgaaatcttacaaccacaaacgatttggaagcgctc taaagtaggttggaagggtagagttttaacatgagacttaagacttgggA GGACCTTAGTatttgaggatccaaaagtccaagAATGATCTAACAGGGCT CGGAATATAGCCTaaaagtctataaacccctcccgaattgaaatattaga ataaatttatcaattagctcAAAAGTGACGttctcgcccgagctttaaat tgctaaaaacgagaaattaaccaaaattctcaatatattttgaccgagat tgttGGCAATCTACTGATAGTGCTCGTGTGAATTGAAATTAATGATTATT TATAAATCCCAATTAAGTACGAATTCCTTTTTAATGAATTGACCGAAATT TAATCTTGCTTTAGTCATGTCACCCAGCCAAAGCACCAAAAGAGCGTGAT AGACGTCAACTGATGATGATGCAAGACCCTGGGTTGGTACAAGAAGAGGT CGCTTATATGAAAGAATGGGCTGACCAACCTGTTGAACTTGGTTTCTTTG TCAACTCTCGCCCAGCTGGTGATTCTGATGGTAAGGTTTTACTCTGTGTC CTTTTTTATTTGTTAACGtgattatcagatgatttttgatatttggctta gagataTGGTCCAGAGAGACACCTCTAAATCTTTTGAtccaatttttttc aaccaatttcaaattcaacttaaagactgtgtaaagactcaattttagag atttcaaagtctcagcttttgaaaaaaattaggtCAAAAGATTTAGAGGT GTCTCTCTGGACCATAAAAGGTATCTCTAAACCAAATgtaaaaaatcatc tgataattCCGTTAATGTTATGTTTACGCCATGTACCAGCTTGTATTGGC AAAGCTTGACTCTAATTACATGTTGCTGAGTGATTTAGAAATAACTTTTT CTCGATAACTCAGTAACAAGAGTTCCTTTGCATTTTTCTTATCAGCAAGG GGAGGGGTACACTTTACAGCAAAACGGTGGTCTTTTTGAATGTCAGTGTT GTATACCTATTCTAATGATTTCAACTCGAGATCGTGGTCGAAGAAACTCG TTTTTTATGCAAACCGTTTCTTTCAGTCAGTGTTCTCAGGCTCTTAGTAA ATTGATCTAAGAAAGCTCTTACTCAGCCCTGAAAGTATAGCTCAAACtta aatttgtcatttttcggTCGGATAAAGTTCACCAAATCTTGCCCAGGTAt taatgaatgaatgttcaTTCGATAACTCTATTTTAGAACCCGCTCAATCA GCTGCACGCCGTAACCTGATCACTGATAAACCGTCAGCACATGACGAAGG TAGCGGCGCCGGTTCAGAATTCCGTCGTGACGAGATCTTAAAGAAACCGA CGGCACCTTTGAATAATGACGAAATGAATACACTAACTGGTGAAGTTAGG agcaaaatcgaaaaatccaaacCCATCGAACAATCAGTAGAGGACCCTGG AGATAGAAGAAAGGTATTAATCAAACTCTTATTTTTTGTTGGAACTAATT AAATTATAGATATTTATTGGTAGTACCTACTTAAGATTATAACACAGAAT CTTCACTACAGTCGACTTTcgttaattcgaactcgaacggggaatcttaa TTTTTCGTCGAATTACAAagtgattcgaattatagaaagaatcgaataat agaggtttgAATGAGCAAGAGTCTATTGTATGTTCTTTTTACACGAGATG TACGCTCacaaaacattttctctttttgaagtagctcaagtaGAAGAAAA GAGTTGAAGGTTTAAATATCCCCTGAATCGTCAAAACACACTATTAAGAT TAAACCAGCAAGTTAGCTTCAGTATATCTTTTTTGGAATGCCGTGAAtta taaatttgtttattttaggCACGCTCTAGTGTCACGTGTCAGGGCCAAAA AGAATGGATTCAATGTGACGGCCCGTACGAACTCATTAAAATACAAGACG CATTTTGGGGCCGTGATGACACGCAAACTTGTACCAAAAGTGACGTAGCA CGTGGTTTCAAGACCGGTCAAAAGTGTGTTCAAGAAAGTGATAACGTGAT GAAGAAAGTTCGTGAAGCGTGCGATAATGAAAACGTGTGCGAAGTCGTCG CTTCTAACATTTATTTCGATCAAACAGACTGTCCAGATGTGTATAAATTT TTAAGACTGAAATGGCAATGTGCTCCCAGTGAATCTAGGATCAAGGAAAC AGCATAGATTACATAAATTACATAATTTTATCATTCACCAATGTTAGACG TGTACATTCTTCCCTGCAGAGAGAGAGTCGGCTCAATTTTGACGATGCGA TGGACGAGTAAACAACTTGGAATGAAATGTTTTTGTGCCCCCCACTGCAC TTTTAGTTTTATGTATACAATTTGACGATTTACCAAATGGTATCAAAACG TACAATTGAATGTTGGTTAAGTTAGACGTTCTTGGATCTTCTTGTGAAAC GAATCCTTAACAATGTGACGAAGACGATGAAATAGACAAATTTAATTATA AGTAACTTTACTCATGATAAGTAccacattgaaaattttttcctgttcCC TAAGTTTTTGTACGTTGACAAAAAAcctcagaaaaatgaaaaaccactTA AAGACAATACCCCTTGCTTGCAATACGCCTGTGACACTTGTCAGAAGAAT ATATTTGGGATTCACTCAAAATAGAACCCAAGATTTTGAGCGAATAAATA ACCATTTTTAAGTGATTGTAAAAACAGTAACGAGGCCTTCAAAATCAACC TGTCTTATTCTCATTACTGTTTTATACCTTTATGACTTTCAAACGAttaa tcaattttat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064722TCONS_00064722Clytia hemisphaericatranscript
TCONS_00064723TCONS_00064723Clytia hemisphaericatranscript
TCONS_00064724TCONS_00064724Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064724-proteinTCONS_00064724-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:101424..108383 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29 0.42 0.03 0.12 0.18 0.31 22.49 23.85 12.38 7.8 16.34 16.29 40.58 31.14 26.48 60.56 30.55 29.03 0.55 0.65 16.88 16.93 13.1 10.17 17.28 23.53 2.25 0.76 0.06 0.13