XLOC_039811 (gene) - C. hemisphaerica

Overview
NameXLOC_039811
Unique NameXLOC_039811
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_391:66155..71161+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039811 ID=XLOC_039811|Name=XLOC_039811|organism=Clytia hemisphaerica|type=gene|length=5007bp|location=Sequence derived from alignment at scaffold_391:66155..71161+ (Clytia hemisphaerica)
TTAGATAGATATTACtgaattatacatttttgaCTTACAACGATGGAAGA CTCACCTAAAAGGGTATGTATTCTTTGATACACTATTAACCCTAATAATG GCAAGGGGCGTTGTACACCTTTTTAAGCCTCTTAGGAAAACTTGCCAGTT GTTGCACACTAGGTCAGGTTTTGTTACTTCACTGTAAGTGCATGTCAATA AATGCAAATAAATGGTGTAAAACTGCAAAATCTTAAAGTATctataattt ttaaaacctgGTCTAAATAATTTCGTTTCGACAGGATTTATAAATAATAT AACTTAATGattaatgattaaaaaaatcttcaaatatgaTTATTCGACGA AGTTTTACTTTTGATCTGTAAATActaatttttgcttttattttttaatg gtttttctTCTTAATTACTTCATTAGGAAATTAAGCAAGGTCGAAGAGCT GGGAATTTGTTTCAAACAGCAGGCTCAAATGCATCAACGAATGAAAGTAA CAACAATGCAATTAAAACAGAGGTAAGTGAAGTTTTCTCAAAAACTCTAC GATCCCACAGGAGCCACAAATAATCAATTTAAGGTTCAGAAGTAGGAACA AATTTGGACTAAATTTGATTGACCAAATCTGATAGATAACAGGAACTTTT TGTTTGAAACAGAAAACGTTGCTTCGAAAATTGATAAATGAGGGTTGATT GATCACATTCGCTGATTTAGCTTTTTATAAGCACTGGACGGTTATTTCCT TTGAACTCTGTATTATGTTTTATTTATCACATTGCTCATTGAACTTGGAT GTCAATTTTTTATCATCGTTTGTTTGGTTTATTTGTAAATCCTCATCTAT TAGTTAAAATCAGCCCAAACACAAATTTAACACTCtcttcgaaaataatt tttcttgaaattattAGGCATCTTCATCACTGTCACCGAAACCAGCACGA AAGCAGGGAGGATGGGCGGATgatataaaagaaaagaaaagagggtaatt aaaagtgaatttttttattcgtTTGAGCACAGCCTTTTTGACCCTATCGA ATTTAAAGGTTTGATCGAAATTACCACAAGAATTTAATTATTTTCCTATT AAGCTGGATGCCTAATTTCAAATACCTACATAAACAAAAATCTAGTCATA TGCTTGGATATATAATAAATATTGTTCTTTTTAGCATGGCAGCAAGAAAA TAAGCGAAGCGATAAATAACGTGATcgcttttatttttatgtttttttat ttctatatcgcaaatcaaaaataaaagatatttattttattcCAGACATG CCCTTCCAGCACCCCCTccccaaaattttgaaatcttcatccaattgact tgaaatttttcaagtgtgcaccaaatatgaattgtcatctttggtgaaaa ttttagCATCACCGATGACATCATTGCCACTTgatgacgtcttcattttt tgataagcaaaaaAGGACCccctctaactttttttcactttaatattttt tgctcaaatatTGAGCAACTCCACGAGGCATTTATTTTTGGGGCAcatgg taattttttttccacCTGCCGGTatggtgtattttacagaccggtccaaA ATTACCCTTTTTGCCTAAATCAGCCCTAGGATACATGTCTAGTCTACATG CCATGTCTAGTGATTGGAAGATGCTGTTTAATCCTGTTTGGAACATGGAT TGATAATAAACTAGTTGTTAACATAAAAGTATCATAAAAGAggattaaaa atgtttattttttagtgATGAAGGCAGTGATAACGAGCAAGATGATGAAG GGTAATCAAAATTAAACATAAACCACTAAATTTTAAATATATTCGATAAA ATTGTTTAAGTAAACTTAACTCCAGACACCAGGATAAAAATTAAAACCAT AGTCAGAGttgctttgttttgttttcatctCTTAACAAATATCTCTACTA CCAGTGAAACCTCTAGCAAGGATAAAAAGTTTGTTGCTCTCTTCTTCACC ACTcgtgattatcttttcaacggttgATTAAGGTATTTGTTAAGAAAAGA CAGGCAAACCTTAAATTATTGCACACCTATCGTGAATTGAATAGACAAAT ATACTATAATAATTAATATCTAATGATGGTTTAGAATAAATTGAATAACT TAGGAGAATTTATAAGCATTTTAAATTAAAGATTTTAATCCCTTAAAAAC GTTATTCTCGCTAAAGaccttggtaatggtttggGAAACTAAGACATATT TTATTTActatgaattttattttgtaggaaatttggaagaatgttGGAAG AAGAAGAGTAAGTTTTTAGTTTAATCAATAGATCCATGTAGAAAACGCTC CTGTAAATCCATACTTTCACCTCCGAGCTCCCCTCTGTCACGATTTGGGA CCATTCTACTTATCATCACTAAAGTTCATTCGCTTGCTTGCCCTTCCTCA AACAATGCTTCGATCGTAAAACAAGAATTAGTGCACACTAAATATAAGAT ATATCAAAGTGAATATACGATTCTGACTAAAACCTTCAGAACTGAAAGAT ATACCATGAAGGTAAGCTACTAAActgatgaaaaatattttacactaAAA CATTTACATTAAAAAAGTCGGTAGAAGAATGTAGGATgttttttctgagt ttttttACTGAGTTTTTCTTTATCCACACATCCAGCGAGCGATTGAAACA AGATGCGACAGTAGTTTTGGATAATGATGGTGATGACATTCCAATCATCC CTGAACTTGATGACGTCACTGAAGATGACATGGCTTCACAAGTCGCTGCA CCTCCGAGGTTTGCGTAATGCGTGCACTTCGTTCAAGGTCGTATtgaata cagtagagtctctcgAACCTCAACTCaaatgtctctttaactcaaacaag tttcGCCATCCCCTCTTTTAACAAAGCCTTATAAACCAATCTCCATTACT TGAAGTTCACTCACTTCACTCGAACAAAAATTTGTGTTCCCTTGTTATTG AGACGCCACTGTATCAAAGAACGTTCAGAATCGACAATCTCCATTTCGTA ACCAACACCGATATTAAAATCACCTATCTTTGTCTGATTAAATGTTTCGT ATAGGAAAGCTTTCTCTTCCTATACTATAAATTAAATTCCAGTGAAATTT AGTTTTCCAATGAATTACTTCCAAACTAATTGTTTTATATAGTGTGCTGG TCACAAGGATTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAACAT ACAGGACTTTTGACATTGGTATGTAGTTGCTTATTGTAAATCAAGTAAAA GTTCGTTATTATCTTTGGAGATCAAGAAATATATCAAGGGATGAAGTCAT ATTATATTCTTTACTTTGGAGCCTTGATAATTAGATGTTGCTCTTAATGC TGCATGTTATACTTTTCCATATGCATTTATGAATATTGATTGAAATTTTA GGACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAAT CTGAAATACAAGAGGTAACTTACAATTCttcgattattttttttttcaat agaacAGAAGAGGGAAAGAGGTGAGAGGTCTTTCATTTAATTTCTTCCCG TCTTTAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTGAGGTAT CATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGC AACAAAGATTAAATCTGATTATAACTTTGCATACACAAAAGGCTTGGCTT CTGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAAGGAGTAGAAGATAG GCATTTAAATTATTATCATTTTTAGCGCACAATATGTACATATAATAATG TAAATAATGGAAACAAATTTTaccatcaaaatattcaaagcAACTTTACT ATCACAacaaattatattccattattgCTGGTTCTTTGAAATTGCAATTG CTACCCCATGAGCCAATTTTGAAGAATTCGCGTGGATTTAGTTTCGGGAG TCTGTGAACTAGTAAGATTTTAGATCTGTTATCATGTTGTTCTGGGTGAG AAACAGAAGTGCTTACATTATTTTTCATTACTTTCGAGTAGGTTTTATAA GCTTATGAAAAGACAGAAAAACTGGTTACGATGTGTTAAgattaaaaaac ataaaaagaaattgaaaaaaggaaATGTAGATTAATTACTAATTCAGGGG ACCACCAATTTTTGAACCTACCTCgcaggtcctttaaattaaccgatgtt ctTACGTCCGTTCGTCTggtaccagcttttctcgggattggttcattagt tttttctgatgttttgcacagtgatgcaaaatgcctgacgtccgcgctcg ataggatcgatcatcggaacggctcgatgacggatcgatatgtgatcgat ggattacttaacgatccggatatgAGATCGATAGacgatcgatactcaag atttttttaagcttatgattagttatcgattatttatcgatctatcgtcg atcttttatcgatcttttcgaccctatcgactcgNAGGTATCATCCGAAT TGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGCAACAAAGAT TAAATCTGATTATAACTTTGCATACACCAAAGGCTTGGCTTCTGGTACCT CTTCGCAGGCCTTTGTCGATGCTCTAGGGAGTAGAAGATAGGCATTTAAA TTATTATCATTTTTAGCGCACAATATGTACATATAGAATAATGTAAATAA TGGAAACAAATTTTaccatcaaaatattcaaagcAACTTTACTATCACAa caaattatattccattattgCTGGTTCTTTGAAATTGCAATTGCTACCCC ATGAGCCAATTTTGAAGAATTCGCGTGGATTTAGTTTCGGGAGTCTGTGA ACTAGTAAGATTTTAGATCTGTTATCATGTTGTTCTGGGTGAGAAACAGA AGTGCTTACATTATTTTTCATTACTTTCGAGTAGGTTTTATAAGCTTATG AAAAGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063504TCONS_00063504Clytia hemisphaericatranscript
TCONS_00063505TCONS_00063505Clytia hemisphaericatranscript
TCONS_00063506TCONS_00063506Clytia hemisphaericatranscript
TCONS_00063507TCONS_00063507Clytia hemisphaericatranscript
TCONS_00063508TCONS_00063508Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063507-proteinTCONS_00063507-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:66155..71161 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.67 34.72 33.13 26.11 115.71 92.59 69.58 65.33 43.14 43.48 27.77 23.33 13.24 13.88 13.39 13.99 19.3 18.51 8.07 11 12.03 10.16 27.62 26.36 83.49 67.81 6.57 5.07 12.09 13.07