XLOC_038601 (gene) - C. hemisphaerica

Overview
NameXLOC_038601
Unique NameXLOC_038601
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_359:138831..149495+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038601 ID=XLOC_038601|Name=XLOC_038601|organism=Clytia hemisphaerica|type=gene|length=10665bp|location=Sequence derived from alignment at scaffold_359:138831..149495+ (Clytia hemisphaerica)
tAGAAAATCCAAAATCAAATCACCAAACTTAGAAATCATACAAAAACTAT
GGAGCAACAAAAAGTTCTAACTGTGCTTTACAAAAATGATGACGTAGCTA
GCTCGGTTCCAGACCCTATCAAACTCCAAAAAGAATGTAATCAATTACGT
CATAAATTGGAGAATCAAGAAGCCTTGAAGAAAGATctagaaaatataaa
acaagAGTTAGAAAAGGTTTTAGAAACTCATAAAATGTTACAGAAAGTCG
CAATTGCTTTGGAGGAAAAAAACCGGACGCTCTTGGACCAATATAAATTG
GAAGCGCGGGAAAAGATGACACTCGAGGAAAAGTGTTTAgatcttgaaaa
tgaaattgaaactaaaaaattgagttatgatGGACTTGAAAAACGTTTTC
AAAAGATGAAGGAGAAAATGTCGGCCAGTGAAAGTTTAGAAGATATGGTA
TATACGCTTGAAAAAGATAAACGAAAAGCCAATGATAAAGTACAAGAGCT
CAAagatgaaatcgaaagtaagTTCATATACTTTTGTCCCAATTATAAAC
CTTTCTGCTTAACCTATTGCCTTTATTTGGCCACCCCTCTCACAGACCAC
CCGAAAGGATTTTTCAGCCAATAGGGTTAAAAAGTAACGAACGCAAACTc
tatggggattgatattcccataatTTTCtgctggggacgatattttctta
caatttttccagttggaAGGGATCCCACCGGGACTGGGAGAAAGAGTCTA
TTGTAAATGCAAAAGAATACAGCATAGAAATCCGTTAGTATGTTCTATCA
ATACAAATGCTGATACTGATACTCGTCTTCACCCCTCTCTCGAGTTAACA
GAAGTGGATGtgagaaattttcaaatattttgatgcAAGAACATCATATT
TCTATTTAATCTACCCattccagctggcacacaacggtGTTTCAACGTTC
ACCATAAAACCTTATATGGATGTAGTGAACAATGgataaacgtcaaaaca
acgttgtgtgcaagcTGGTGTAATTTTCTGGAAATTAACAGATAAAAGGA
ACTTTGAGCTGAACCAAAATCTATCGACCACTTaattaagattttcaaaa
ttcatttattttcaatccaGCTCTTCAACAAGGCTCAGGAAACAAGTTCA
AAGATTTCGANAAGTGGATGTGagtaattttcaaatattttgatgcAAAA
ACATGATATTTCTATTTAATCTACCCATTCCAGCTGGCATTCAACggtgt
ttcaacgttcataaaACCttgtatggacgttgtgaaGATTGaataaacgt
cgaaacaacgttgtgtgccatctGGTGTAATTTTCTGGAAATTAACAGAT
AAAAGGAACTTCGAGCTGAACCAAAATTTATCGACCACTGgattaagatt
ttcaaaattcttttattttcaatccagCTCTTCAACAAGGCTCAGGGAAC
AAGTTCAAAGATTTCGAACATAAGATCTCAAAACTCACCAAAGAGAATAA
AGATCTATCGGTCAAACTTGAGACATACTTAGAAGAAATGGAAGATATGG
AACAAAAAAATGACGCACTTGAAGCAGACCATAAAAAACTTACAACAGAC
TATGAGCACCTGAAGTCTATCGAACTCGTTGGTACAAATATGATTGAGAT
CACACAACTAGAGCAAGACAAAAGTGAACTTAAATCTAAACTAAGAAAAG
AGATTGAAAAGCGAGAAACATGTGAAAATGAGTTATTCCGAGTAGAAGAA
GAGtatgaaacttttaaaatggaGTTGGAGGAAAACGAGTTAAAACTCGA
ATCTGAAATTTCGAAAGTGAATATTGATCTTTTTGGACGTAAAGCTTCGA
CAGCTTCCAGTATTTCTTTGGATAATGATAACAACAATAATTTAACTGAT
TCtggaatgaaatttttgatCCGCAAGAAACAGAAATTGATGGATaacct
tgaaaaagaaaatgacgctttaaagaaaaaagttcaACAATTAGAACAGG
TAAAGATatttacttaggcaaaattatgggtacggggacgtgccgctggt
cagggtcccatttttaggctttgaagatatctgacagggtccaaaattta
ctaattttcaagatgtgtttcTGACAGagggtcgacttttggtaattttt
gaccatttttcagggtggaaattattattatttttattcagTTTGGCCAC
TTTTCAGAGCGGAAATaggaagatttttcaatttttctagctgacagggt
ccatttttcaaactccagcgggaCGCCCCAGTCGGCGGTCCATGCCAGTG
TCTTTGGGAGATATTTACAGTGTGTCACAAAAAAACAGACCAATTTTTAT
TgaagtaaaatcctcataaaTGATGCAAAATTTTATGAGTTGTATACAAA
TAAATCTCCAAAGCTATCCAATCAACTTGCGAATTAAACATCTATTAAGA
TTGAACAGAGAAATTGTAAtattatttcaattattctaagCCCAGTTTAG
ATAAttagttttgaggattttactgTATATATGAAGAATTTATCCGCTTT
TTTGGGACACGCTGTTGTATGATGAAGAACCTAGCTGTCTTACAACACCG
CTTCAACATTCATCATCTTATTAAGTAAAAAGACGTTGTCAACGATAGAT
TGGAGTAAAAAAATGATGACTATTATATTTCCAgctgagaattttttttt
ttgtaatcatAAGTGTAAAATCCCTGGAGGTACTACCCTTACCCAGCGAC
GAGGTTGCCCTGTTGTGGCTCGAAAGATGGACCCTACGTAGAGctcactt
ttttgaaatttttgccgaaatttgtgaaaaagtgaccctgagtGGGACTG
ACATTCCAAaaatttctcaacttttttcactttttctcaatcctcccccc
cccccaaaaaaaattccccccccccccccaaaaaaaaaaaaccccccccc
ccccccaaaaaaaaattaccctgCGATGACGATGAGCtggttttttctct
ttttatgtttttgcaGCCCTACGTGGGACTCATGGAGGTGAAATTAATTT
ATCCTTTCAGGAACATGAAATTCTACTCGAGGAGAATAGCAATATCGCAA
aatcaaatatcgaacttgaaGATCAACTCCAAAAGTGTGAAACTACTATC
AATGAGCTTGAAGAAAAATCTAAAGAAGCTGAAAGCGAACGCAAGCGGGC
TGAGCAAGAAAGTTTTTCCCGcctgatgacgtcagcagaaaaagaATTGG
AACATAATGAACGAGCTGGTGAAATTGACCGTTTAAAGAGAGAAGTGGTC
GAAGTTCAAGATATTTTGAGGATTACAGCTATTGAACGAAATGAACTACA
AGTAATATTTCTTACTCCGATTTTGTGCAAACATTATTCCTAGTGTTGAA
TTAGTTTGAGTCATTTTTGAGCTTTGAATTTCAGACATGTGGTCATCCTA
AAACCTTCATAATAATGCTACCTTACGGGTAGAAATTCTTATTAGATATA
GCTGGGTTTGGCGGAATTTGACAAAAactgtcaaaatttcaacaacTAAA
AAGTCACTTTAGCCAATCACAATGAGAGGACGTGCAAAAATATCCTGTCA
TTTGATTGACCGACGCTTTCTTGACCCATGTCTGTATTGAGTCAAAGAGT
AGCAGGCTGAGGAGAAATGGTCGAGTGTTTTATTGCTTTGTGAAAAAAAG
TACTGTAGGGGTTCCCGGTTTGGATCTCCAGAAGCAGCCTACGAGCCcat
ttcccttttccaggagagagcgttttttgaaaaatgggaaaacagatccg
attttctaggaaagactTTTTCCTTAAAGCTATCTGTTTCCCTGcttcag
ctgatgacgtcatcagagagaaatagatcaatatttctaggagatgacat
aataaattgggaaacagatatctgtttccaaaaaatatgatattgcattg
gaaacagattgaactttctgggggaaaacagatatcaatcacaaaaagca
agggaaacagatgaaaatttccaggagaagGAGACAGATATCCTATTCCT
TAGCTTGggagaacattttcaaaattttaattctgaaaattgtgaaaaca
gatcaaattttttagggaagatactttgagattaaaaatttaggttttga
ggagaatcatttctaggaatatgatttttgaaacttttggccaacagatc
aaattttccaggaaggctatgcctgggaaacagatgtttaaaaaaaggac
cTCGCTGGATGCTTTCGGATCTCTTCTCCGGAGCACTATCCGAATGTTTT
TCATTTAGGTGCTTTTGATTGCTAAGGGAACATTTGGATTATAAGTAAAT
GAGGTAAAAACGGAGTCCTGATGGCAATTATAcgatgaaattctaaaaac
tGTTATAGATTACTTTGCCTGTACCAAACGACCAAGGCTTTTTTATCGAC
ACCAGGAGATAAAAGTCGCCTCTTTGGATTGGGACAGGCTATGGATTACT
TGTCTATCGACGTAAAATATCGAATGTTTATAACACTCGACTGAGCtttg
tttttgtatatattttaggCTGAATTATTCCACAGAATTGGATCTCCAAA
CCATCAGTCATCTTTTGGTTATTCACCTAACTCACACACGCCTACAAGAC
AAATGGAGCGAAGTTACTCGTCTAACCAAATGGAACGGAGTTACTCGTCT
AATCAGATGGATCGAGGTTACTCTGCCAATCAAATGGAAAGGAGTTACTC
ATCGGCTTCTCAACTCATCACAGATAATCACACCGAAACATCTTCTACCA
GTAGTTTTAATTCACAAGAGTAAGTTGACTAAaggggctctgaccatagt
caatttttaatatttgggactagaaaatactttaaaaactttgccagtag
tggcaaattttaagCACTTTTTCTCTATAGCTGGAATTTGCTATTTCTGG
TAAAAAAATGACTATTGACtgacttgttttgattttcaatttcgagattg
gtttaaaaaatggTACAGAgtgtccagaaaaaaattgccgAGTTTTGAGA
CATCATTGAATAGTAGAAAAATTTGTGTGTATGTGAAAATAATGTAATCa
tagtcccggggggggggtggaaatggatgatgggtatatgcagacggtaa
gggtcagttttttcacctttcaaagtctctctaagggtcggaaaaatcag
aaagttttaaattagtctctctaagggtcacattttcagaaaaaatcagt
ctctctaagggtcgcctttcggaggtcccgtccacacatacccctcattc
gccaaccctagtacccccgggtcATGGTCTCTTGGTCTGAGGATATAACt
tcatgatattcattacgtaatcTATTCATTAcgtgtttttttctttactg
AGATACCCGTGATTTTTGAACAACTTTTCTCTAGCTTAAATTTGCCACCA
CTGGCGAGAATCTGAgtgtttttgtagaaaaactAAATTACCTCATTGAT
ATCAAGAATACAACTTTTCATCATCTTTTCAGGAGTGAACAAGTATTGAA
CGCCTTCCACCGAAAAGCGTTACGTTATGACGAAGAAAAGGAAAGAGAGT
ACGAAAGTAAAAtacaacatcaaaataaagtggTACGGTTATAATACTTT
TTCTGTAACTTAGAAAGAATGACCATaatagttctatttatactgagacg
ataAATTCGTCTGAGAcgagaaatttagaaaatgagcattatgaAGAGTT
TACcttccattcatgtttcaataaataggatctcctccacagatcacttt
ttacaaacttttcctctcagacgatttttccgtctcagtataaatggaac
taaTGTATTGGCAACCACTGAGCGTAATAATGCTTAACGCATCCGTAGGA
GTTAGGGTAGCTGGAGAAACAATTATAGTTATAATTTTAGCTGGTTGATT
TATTAGCCAGCTTTGTATATGCTATATTTTCAGCGGAAAGGGTGGTTAGG
TTGTAATTTGACTAGATCTAGACTGACGCCTAAGGACGAGGTTAAATCAG
CACTAGGAAGGCAGTTTGTTCATGGTCGTTTTAATCACTCTATTGTCCTC
AAATGGGTAgatccattgagtttaaagcccgaagggctagaggtcaatct
ctaacctttctcaggcaagaaaaggtGAAGCCTtaaacaagaagccggag
cggtgtgaaggtccagctgtcgtggcaataaccgaatgtcgttcgtaccg
ggttccttaagtgacgcaaaaaaatttccttcccatgcatcctccactct
gagcttctattctttgacactttcttgtatagctaagttttgaaagtttt
tgatgcatttcccgaaatcTCGAAACGtttgccgctgatgggattcgaat
ccactatatacaaagcacctaGGATTAGAACGCCAGTGCCTTTACCACTC
Gaccatcgagtcacaactgcattcaggagttcaaagttccttataaacat
ggtatttattccaaaaccctaaccagggtttaactcccatccccaaccct
agcgctaaccctacctgaccctacctgaaacaaccctttaatctaactgg
gaaatttgactctactaccaattcaatccaaaacataagtcaaacatcgc
gcgggtaggcggggcaaaaattctagatcggcggttggtttagcctggac
ttgttaatctattgcgcgcacaggccccgacaaagacaaaatcttttcga
tcagttgctttttaaaggtccattctgctgcgcgctgaaccaaaaatgcg
ccgcatttttgacgacagattgaatctagcaattcctttgtttacgattg
atatttttttcgaaatttagctataaattttagtgtcaatctgtcatttg
tgtaaaaaccaggtgagccgctcaaggccgcgcaactttggtaggatttg
tttgcttcaaatcctaccaaggagattgaccttcGGGCTtattatacttc
attgggtagatccataaactcgctattgatAATACCTGAATTGCTGAATt
ggcttttccaaaaaaaaaccttgcaccccctgttgaggaggtccatttcc
attccaagggggtatggtttgaaatgcagtggaattccatagcagtagac
aaaaatccgtcaaaaataagtggaTTTCCatgggggtaatgattgaaaat
ctgtaaaaattcggaattctagaggggtatgatcctaaaattgcctggaa
ttccaagtgGTAGTTCACAAAAGATTGgagctcctcaacagggggtgtac
gctttttttctagaaaagcccaATGGGAGTCCATAAAAAAACAGAAGTGT
TATTTATGCGCGGTGTTTGTCTATATTGCTGTCCGGTTAGCCTTTAGAAT
ACTGCTAAAGCGTGGTTGGAAACAACTCAACCCTCTAAACAACTCCGTGG
TTAAAGTCTAGATTTAATATAGTAGGTGTCAAAAGCGTTTCAATGGTAAT
TAAAGTGAAAAAACTAACGAGTAAAAGTGCCgttagcaactggggggggg
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacctccccccccccc
ccccaatatgaaaatgcttcctacggcactgagtaataatttcttttcag
ATCAAATCATTGGAGGATCGCATTCACAAACTACGAGAACATGATCAGTA
CAATATGAACAACAATAACAGTAAAGGTGAAATATCATCGCCTGAAACCA
CCCCACCCGTTGCTATAAAAAATGGAAGATTACACGATTCAATGGTATGT
AAGCGTTCCACTGCTCATTCAAACTATAAAATATAGGAAAGTTTACCATC
ACTGTCGAGGGCGAACCGAAGGTTCCCTTTTTTTAACTATCTGCCCGAAT
GCAGAGAAGGGTCTCACTTTGATACTTCCCTTTCTTGCTGAGAATCAAGT
AGAAGAGAGGCATCGCATACTATCTTGATGTCTTGAAGTCCATCAGGGAA
CGCGTGACCTTGCGCATTGTAGTTGGAGCTCTACATTCACAATATAGCTT
AGACTAGAGTCTATAATGCGCTTGTCAGTGCAACATTTGCAACCTAATTA
GAATATAATGTTTCATTCTTTTAGTACCGTAAAAATAATTCCCTATCAAT
TGCGATTCTATCAGCTATGACCTATGTCATGTTTAGATGGTTGGTTGAAG
TATTGCTCTTTTCAATATGTCACTTATTTGAGTTGAGCCACCAaggtttc
tgaaaaccaattcttcgccacggcatgacgtcagaacttggttacaacag
aacacttactaaagattaattatgtgttttcagtaaacataattttttag
tgagttaaaccatagtgtttgttttaccctcgaaattattaaatcttatt
ggttgaaaaagatgtcacatgactttccgtggcaaagaatgTAATGGGCG
TCAAAGTCCAGTCAAAGTAGTCCAAAAGTTTACCAGGCCAAAAATCAATT
CCAAATAAATTTCTTTTGCAGGACGACTTTGCTGATAATACCTTAACAAG
GCGTCAACGATCCAAATCTCTAGATTGTTTGAATCGTTCCTCATCAGAAG
AAGCTTTGGAGCATCACCGAGAAGGTCAGtaactgttttgttttgatcat
aTATCACTCTATCTAAAAATGGCTATATCAGTTATCTGCCTGATATTGCA
ATAGTGGATTGACGGCTTATCAACGTTCTAAAGCTCtggaattttcacca
aaattccaATAAGAAAAGAAGTGTtgttttttcaaccaaaaagcTAGTTG
AGATCGGTTGAGataattcaacatttttatttcGGAAGGAATTTTCCGAT
TAGGGTAAGAATTTAGGATGGTTTTTCAATCGAATTTTTAGAAGGATTCC
CATAGAGTCTGTTGCACAGATTTAAACTCGGAACAATTTTATGTCTGGTT
AATTGATGAAGATTCTATTCTTTTTAAGACACACTTGACGATCGAGAGTT
ACGACGTATATCTTACCAGCTAGCTGACGGGAACTGGAAACATCTACCAA
ACGATCTGAATATCAAAAAACGTCAAGAGATTAATCAAATCATTAATTCA
GGTTACAAAGATCAAGAGAAAATTTATCGCATGTTGGTCGTGTGGCGTGC
AGAGATGGAGAAAAAGTCACGTGAAGATTTGTTGAGATATTTAATAGATC
ATTTAGGTAATCGGCGGAAAGATattgttaaatttttgaaagatatgacg
tcatcaaaacatgTGAAGGATAATCAATCAATTAAGACGAGATTCCAGAA
ATTTACAAGATCGGTGCGTagatgaaaatgatttcaaCACTGGTGGTTGG
AGATGACATGATTGGTGATTTTGGAGGTGACAAACTGAAGCGGTTATAAA
TGTAGGAAAATACATCTAATGTTATACGGACGTTGAGAACATTAGAACAT
GAACGTTAACAACGTTGAGATTATGATCCATGCGTGCTCATTTAGCTAAT
GATGGCGGCAATAGAGAAAATGAAATAAGATTACAAAGATTGTGAattgt
tgaatttcaatttctcaGAAATGACGAGGTAGGCTCccagaaatttacaa
atttatttagtgcaaataaaaagacaatgaaaaaaGAGACAATTGAAAGA
ATTACACGCATGTTATTCAGAAAAGAAGAATGATGCTGATGATTACGAAG
TTAGAAATAATTACatctaaattcaaatttttttaagtaCGTTAGACTCG
ACGTGTCACGCTGACAAGGTTTTTGAGAGTTTGTAGAGCTCCCGGTGGAg
ctaggtttgcgagatgacgggtttgttcgacccttagagagactaaatta
tcgaaaattttgtccattttttggcGTTTTTGCCACCAAATCCGGACCAA
GTcttagtccaaatttcaaaattgaccctTTGGTGGgagttcatttttga
tttttgtaattttgaaacataTTTATACATATTTATGAAGCACTGCAACT
GTATCGTGCACTCTTTGAATGTTTCAAACATTGTTTGCTGAGTACTTACA
GAAACTCTTCAATCAAGGAAACTGCCATTTTAATTTTCCCTTGTTGTAGT
CTTGTAAGAACtgtattttaaaatcttttgaaatttaagttcttataaaa
aataataccTTTGAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061520TCONS_00061520Clytia hemisphaericatranscript
TCONS_00061521TCONS_00061521Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
Girdin proteinTCONS_00061521-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_359supercontigscaffold_359:138831..149495 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.05	0	0.01	26.02	17.68	5.69	5.82	1.05	1.29	0.78	0.54	9.41	7.31	0.03	0.04	2.55	2.77	9.62	15.73	5.36	4.01	0.89	1.38	2.33	3.45	0.02	0.04	0.01	0.04