XLOC_035843 (gene) - C. hemisphaerica

Overview
NameXLOC_035843
Unique NameXLOC_035843
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_284:1176887..1186756+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035843 ID=XLOC_035843|Name=XLOC_035843|organism=Clytia hemisphaerica|type=gene|length=9870bp|location=Sequence derived from alignment at scaffold_284:1176887..1186756+ (Clytia hemisphaerica)
AAAACCACTGTTGGCGAAAGATCAAACACCTTGCAAATCCATGGTATGGA
ATCAATACAAATTTGAAGGTTGAAGTAAAAAGAACTTCAGGTCAACTCAA
CAGTACTTACATGAGCCCTccagtcacctttcaaatcacgcaatcacgca
ctaACAATTTCCAAATCAAGTTATCACGAGTTAAATTTCCTTAATCACGT
TAATCACGTACTTTAAAGtcttaaatcacgaaatcacgaacttgaaaaaa
cgccaatcacgccatcacgaaaaccgctgggggggaCCTCTTACATACTC
TtcgttttctataaaaacaagtaaattttTATCGAGGCTCAACTGTTGTT
ATCTTTTAGGACAAGTAGCTCCTTATTATTCTTGTCCAGTTCTTAATAGA
AGAAAAATTGCGGTAGTTTAGCCTTTATAGCTTGATATTCAGCAACTCGA
CACCCAGCttagttttcaagtttttaagccgttttttgttctcataaaat
tgttcttatcaaaaaCTCAGGAACTACTGGAGCTctggacttgaaatttt
cactagTGATATATATTGACCATCTAAGATAGTGTgaacaattttcaatt
tagtcacGTGACCTGTTGGTATTATATAGACGAGTCCGATTTTTACCCAA
AATGCTCACTTTTAGCATAACAACTCGTCCGATTGAGCTGAAATTTTGGC
TGCGAGCTTGTATTACCAATACCTAACActtgtcaaaattcaaaatcaat
agcATTTTCAAATCactacaatcggcgccgaaatatttggcacaacaggg
caattccctcaaaactttaaaaccgcaagtgaaTTTTAAGTGCTTTGTAG
TACCGTtgaaaagtagagttttaaattctgagttttaacattagacttaa
gacttataACCTTAGGATCTCAGTATCTAAAAGATCAAAAATGTTCcgat
aaggctgagaatataacctggaagccacttaaaaTCCAATGAttcaaagt
ggaagtactgaagcTGTAATTCTCGtccgagctttaaattctgtaaaacg
ttaaaatacccaaaatttccaatatatttcggcgccgattgtacATACAG
TatttgaaaaaagaacaaatttggGCCAGTCCGTAACATATACGATACCA
ACAGGTGGCAAAAGATTGGCCCTCTACCCAAAAAATACATGTCATTTGGA
GATGCCTCacaaaattttagcaaaaaatgtTAAAGTGAAAAAATAGTTAG
AGGGGGTTCATATTTTcggtattttcaaagaatgCTGGCGTCACCAGGtg
gcgatgacgtcatcaatgatgtcaaaattttcaccaaagatgccaaTGCA
TATTTGGTGCAtacttgcaaaatttcaactcaattggataaatattttaa
aagttatcaaaaagagGGCTCTCTTCccaagatgctcgaagggttaaaCG
AACGCCAATCTTGAAAGATTTCATATTATATCATTGAATTCAATGACTTG
CTTTTCTTTGACagtaaaattaaattaattttatcaataataaaaaaatt
aacaatattTAGCCACAGCAAAATCCATAATTACCATCATTAAAAACAGA
CAATGTCGAAAAGATCACTAAACGAAGGCTTTGTTGATGAAAGGCCATCA
AAATCATTAAAGGTTGATGATGGTTCACCGTTTGCAAATCCCTGGAAAGG
CAGTAACGCTGTATTGGTCGTAGAAGATATCGAATTACATGTTCATACTC
AAACACTTTCTCTTGCTTCTCCTGTTTTCGAAGCAATGTTTAATGGTAAT
TTTGTCGAAGCTCAAACTCGAAGAGTTCCACTTGAAGGGAAATCATATGA
GACCGTTGAACACATGTTAAAATTGGTATATAACTTGACAAATAGACTAG
GTAACTGGCTTTAGTACTTTTTTAATTATATCAGATTAATCTCATAAGAG
ATGATCCTTTCTGTGCATACCACGCAGAGGCTCTTAAGGGATATGGCCGA
TGTGACGATCAACCTGGTTGTTCAGTCAAAACAATTTAAACGCGTTGCTT
TTTGCTTGCAAACGAAAGCGAAAGGTGATTGTTTTTCCTTAGCTAATTAT
TACAAGTTATAAGTTATTGGTTCAGTTAAAAATAACCTTCATTTGTCAAC
TTCATTCTCGAATTTTGTGCGACATTCTAAAGCTTTAGAATCATCCACTT
GAAATCATCTTAACAACGAGTTACAGTTTAGATATCTTTTTCTTACTACA
ACCTTTCACTGTTTTATCTTCTTCTTTAGAACCAAAGACATTGGCATGCC
TATCTTGTAAGCTTGGAGAAACAAAGTGCAAGAAAGACAAAAAAGGTTAT
GATATAAATTAAACGTGTATAATATTCTgtcatttaaaggttttgttttt
taaaataagagttATATCGTTTgcctaccttaagtggattaattttcgcg
aaatttagtccacgcgaaaattttgaaggcctttgattcgcgaaaattag
tccacgcgaatttatttggaattttacaaTCGCGAAAATAAAAGTTCGCG
AAATCTAGATAACATGTTACAATCAAAACATATTACGAGTTCAACTCTTC
ATTTCAATTATAAACTCCAGTAACCTCctaataccgggtgcgccacaaaa
aagtttctctctttaaaactaatcttctcgaaatctaaaagttttaaacg
aaccattcttatttcattagaaagaagaaagataaacttaaattttgatg
ggtcatttattaaattagattcatcagatcaaaagttatgctcaattgaa
tgaaaaagttattttcagaaagtgctcgaaaacgttgaaaatcgagctat
caaatttctattttaaaattggcaatcgccATAGCCtatacatgattaag
agcatttttccgtAACTAAACACTTAAATTTtaaaactgaagggtcgaaa
gggtttaaaatcttcattagagtcattttaatttacttttaccaaaATAT
TCCTCAGAtctttggttctagactggataaagtcgaTGTAGGGCTGGgtg
tacctcaaaacccatatctgatgtattttatgaatttttgccagatttct
ttgcctttttcgacgaattttcttccatttGTTATAAtgcaaccttcctt
tatataacaaaaggtcatttagacagctaattatcatttttgattactga
aacgaaaatgctgatgcatcatgtaattatgcttctgtttaatttgataa
gtccatttttaacgtttttgagcactttcaaaaactaactttttgattta
attgagcataacttttgatctactgaatcaaatttaataaatgacccctc
aaaatttaagtctatctttcttctttccgatgaaataagaatggttcttt
taaaaatgttatatttcgagaaaattagttttaaagagagaaactttttt
gtggcgcacccggtagtactttctttgaagttttttgaaagcttttgagt
GACTTTGTCTGCCTTTGTTCGATTCAAAAACACATCTCTTTTCTAGTTAC
AATTTATAtagtcgcgaaattaaataaagaaggccattttcgcaaaattt
aatcctcgcgaaatctttaaattctcgtctcgcgaaaattagtacaggcg
aaaatttatccacttaaggtactcatcaatttcaattcacaagctttttc
acattggatcagaggaatgtaaagagatggaaaaacagcttttctgatta
ctcaaagttcaacgatcacttctattgaaaattctattgtaaaaacgttg
attaggtcattaaatgaaagtccagaaaagacggctcgccatacaaatcg
gacggtttctacatgatttgacgataaaaatgaaaatttgtttttccttt
tttgccgattactagttcaatttttaaggagcaatatttttaccaatgta
tagcaaaagaaattcttaacgcaatgatattaaattggttcttgtaaaac
tgtcaaaagtcaagtaaaatcaagatgaagttataattttctcgagctct
agctttccatataggggtgcggtcatgatgcggttatatcagtagaatcg
ctagggaattttgagcaagaagatataggtaccttttcgtataggagagg
tgtacccaaaatataagccctaaaagtttgcgcataatcaggcttgaaac
aaaagaattttgtcacaacacgctaattatNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNcgacataaactcccttaagggcaagagacctggtatatgacgag
ccgtttttccattgttttcaagaagctgtttttccatctctttacattcc
tctgattggattgacacggatgtggagcaagattggtcagaaaaaggaaa
agaaaaacatatttttacttatatcagcataatataacaaaaggcagaca
ctgCCTTATATGAAATAAtgtgtgtctgatatgaaacagaaacacttatg
taaaaataaaacgcAAAAAGTGCAAAGGGGCGTTTGTTAATCGAAATACT
GACCTGTTTTTACTGTTCAATTTTCGaaacaaattcaaatttatCATGCC
ACATCCAATATTAAAGTACGGCAACTTTTTCTTCATTGTCATTGAATATC
GAAACACTGACAGATAGAAGGGCTTTACACGCACCGTCCAACCCACACAG
CTTTGTAATATCTACCATAtaaaaaaacttcttttaatACTTAACNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtcacttttgccaaaaatcacgattttcggctaaaaaaatccaa
tatatacaattttgaagtattttgatgataatgTGTTTCCAGAAGCAGCT
ACAACATCAATAATGGTGTAAAAGTATTCCCCAACTATCTAAACAACACT
TCCAGTCAGTATTCTTAGCTTCTGAAGCTTTTGAAGGGTATCGGCTACCG
TGAAACTAGATGGCATAGTCGGCGACAGttgcaaagtttccaaaaaccgC
AAGCCTTTTGAGGCAAACTCATTGCTATCAAATCTGATCTCTTTTGCCCA
TAAGGAATGCTAAATGTCAtcataataattccatgtgGCTGTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTCTCCGAAATCTGCTGCCT
Caccacgtgatcaaaacattacatcaccatatatcaaaagaaagcttaga
aCCTCTACTTTTCGTTTCTCTTTACTTCTACGgctagcaaagaagccaat
gggagaaatatagcttagaagatcACTATATCAAAAAGACGACTATACTC
GTCCgccggaacgtatgctcgacgactatactcgtccgccgggctgaaaa
ggttaaCTCCAACTTTTAAAATTGATCTTTGTTATAGGTCGTCGAAAATC
ATATTTTAATGGATGCTACCTATGCGGTTTGTATTATAAAAAGAATGGTA
AGGAAATTCATTTAAACTtatacaaactttcgcgagcagaaactttcgcg
aggtcaaaaaatcgcgaaattttcgacatttactttcgcgaatttgagga
aaaaatgtttttcgcgagcataaactttcgcgaatcgttggatagaaatg
agaattttcgaataaaaattgccttaaaaatgaaaaatattccttaaatc
cgCTAAAAcggttgctcttcgactttaaaaagtCGTCAAAGGATAATAAT
CTACCGAAAATTTTATATTGATTACGatttctagtcggttattactgata
accttataataaaactgtcaatcaaataatgtaaacactaattaaatatt
cagcgcgcgtgagagaaaaggaaaataaccgtcTAGAAgctacttccaac
gcctttttttcttcacctaaaatcgtaacgagagacatacagatttctgt
atgtctgacccgttcaatcttactatgaaatatcatttagtcaaaaaagt
tgaatggatcctcaaaaacctaaaaaaagttgtaaaattaaacaacgttt
tttgagggaagtagcttctagtcgttgaaattcagaaaagagacgcaact
tcaccccttcaattctttttatttagagcttgattttttgtatatgggtc
tgttttcaacgactagtttattAGTCTAAtggttttatagatttccaatt
tttttgagaatttctcgcgagcataaactttcgcgaattgccctgataag
aattttaaaagacatttactttcgcgaaaaaggccaaaactcgcgaaaat
cgcgaaagtttctgcttgcgaaagtttgtacgcctaaagtattatTCATG
GTTGATTGGAAAGAAAGTTGTTTGTCCgtccagcttttctcgagattggc
tcattagttttttctggttTGAGGCACAaagatgtaaaatggcaatgcct
aaaatgtgacagagcccgattttcgaggaAAAAAACAATTTCCGGCCGGA
AATCCCGGAACTATGCCTGAATAACCGGCATTTTCTCGAGGTTttccttg
aatttcttgagctttactttaaattttacacactgatgcaaaatagaaat
acctaaaatgtgacggagcccgattttcaaaaaaagaaaattttctgcCT
AAAattgccggaaatcgccgtttttgcagattttcctTGTTCTTTCACAC
AAAATTATTATTcataacaatgcccaccatcaagcatgattcaattgtca
ataaaagcgATTTTTGCAACCgaaactttctatttctattttcccttTCC
CCTCCCCCcctccccatcaacaatcaatgatgaaatttaatgtgttatgc
attttcgctaaacgttATAtcttctgactgattgttttcatttttctcct
ttttgctatctaactttcatcgtcaggtaggtccattcagcacgTGGCTT
GTTAACACTTGTATTGCCGACACTTAATAGTATTCTTCTTTGAAATCTTT
AGATCTTGAAAGACGTCTTTTTATCCAACATTTGGTATTGCTTGATGAAC
TTTCAAAGGAGTACATGCTTGACGTTTTGGCTGACAAAATACAAGCTGAA
ATTGTCCACCAAAGTAAAGCTATCGCCAATTTGCAACACGCTTTCGATCT
TTTAGAAGCCTCAGAGAAAATTACGGATTGTATGGAAACTACAGCTACTT
CTATCAAATACATCCGCCTTCATTTGGATTCGTATGGCGGGCTAAAGGAT
TTATTAAACGAAAGGAGTTTGACAATTGAAACCATTTTAAAGATGAAATC
AATTGTACTGATCAATCTTCTAGAAAAATGGCCTGAATCAAATTTGTTCG
TGCACGAAGGGAAccaatataaaaaagaagcgaTGTGGTTAGCTAAAGAA
CTTTGTGACTGACGTCCATGTGATGTACAATAAGTTATCGTAGGATCACT
AAACATTCTCATTCCTGGGGAAATTTTTCTCTATCCACTTCAACAACGGA
GAAAGATCGACAGACTCTCCCACTTGATACGATCGATAACTGTTTCCTAT
CGATGACTAATCGATAACCAATCGGTTGATTGGGATATCGATTGATTCTT
CTATTCCTATTCTTGAGTATTGATTGCTGATCGATTGTTTTTTTCATCGA
TTGGTTATTGATTGTGGTCAGACGATCATCTTAGAGCCACCAGTCAGTCA
TTTTTGAGTCAATCAATGAATAATCGATCAATCAAGTCTGCCTTAAAATC
TTGATCATCGCGGTTGTCTATCGATTATCAGAATCAATCGATATTCAGTC
CATCAATTGGTCATAGATCGGAAAAAGTTATCGATTGTATCGAGTGGGAG
AGTTTAGAATaaggaaaaaaacaattttttgcttattCAGTACAAtgtaa
caatagggagacaccgtcctgatatgatgatacatgtgtctgatatgaaa
cggaaacacttaagtaaaaataaaacctttaagtctCAGTAAAGTTTTAC
AGTCAGCACAAGTATCTCGAAACGAAACGCCATTAATGAGGTAAGTCAAA
CACAttcaaacattttattttcttacaTGTAGGTtgtttttgtacatttt
tttattttacatagatgataataaaaagttatgcAATATAGTGTGAAACC
AAAGCCCAACGTTTGTTCAAAATGTCTAAAAGATCGCTTGATGAAAGCTC
TGATGATGAAATACCGTCGAAATCAACGAAAGTTGATAACTATTCTCCAT
TCGCAAAACCCTGGAAGGGAAGGCGATGATGTCTTGATAGTGGAGGACAG
AGAACTTCTTGTTCATACTACAGTTTTATCATCGGCTTCTCCTGTGTTTG
AAAAGATGTTTAATGGAGGTTTTGTTGAAACTTAAGTCACTTGaaggaaa
attattcaaaatggtTGAAGCAATTTTGAAGTTTATTTATCCAAGAATGG
ACTGCAATTTAGGTAAAGTTGTAACATATTTGGCTTTATCTCTTTTGTGT
CGAGAAATAAGAAAAACTGAATGAGTACctgagaactaatttttgcgaat
tttgattttgatttttatgattATATAGTTATTCACAGTAGAAAATTAGG
TTTCATCGAACGTTTTCACGTCGTGTTCGAAACCTAGAAATCGAATTTTC
GAGGTTGtcgtcaaaacaaaacaaaacttcttcaAACTTCAAAAACAGCA
GAGAGGACAAGACTTGCCGAAACAGaccaaaaataaaaaccaagaagaca
aacaagACGTGAGAAATGGAGGAAATGAACCCTAAACAGCCATCAGAGAC
ACCAAAAAAGTAAGTATAATACTTTCTTTACTAAGCGacttatttttagg
aaatcaaatgtttggtgtttttaaacttttgaaacaaATTTCTTCATTAC
TCTTTTGGGTAAGTATcctt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00056897TCONS_00056897Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00056897-proteinTCONS_00056897-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1176887..1186756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.02	5.98	9.36	11.06	15.17	11.44	3.47	3.73	2.15	1.75	1.28	1.24	0.89	0.52	1.38	2.67	2.32	2.56	0.16	0.38	1.02	0.75	3.98	3.15	1.22	1.81	0.54	0.58	1.49	1.69