XLOC_035677 (gene) - C. hemisphaerica

Overview
NameXLOC_035677
Unique NameXLOC_035677
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_279:3918..12480+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035677 ID=XLOC_035677|Name=XLOC_035677|organism=Clytia hemisphaerica|type=gene|length=8563bp|location=Sequence derived from alignment at scaffold_279:3918..12480+ (Clytia hemisphaerica)
caccGGTACAGGCAAATTTCAGGAAAATATGAAAagtacttagaaaacag
ttagaagcACTTGAGAAAGtaagaaaatcaggatagacaataggaaagta
gaaaataagggggaaataagagaggatgcatcctggtggatgatatagTT
TGCCAACctttttaaaccatacaggggtattgaagaacttttccaggggg
tctcAGCCTCAATTTTCTAAGGGGGTTTTTGTTCatctttcagattttcc
aagccAGTCAATATATTAAAAGCATTTGACTTATTTCATTTGTAACCATT
TTCCTTCTGAGAGATGAAAGTTTTTGCTTTGACCGCTGACCTTTTTTTTT
ACCTACACTCgtgaaaacattttaaattaAGTAAATGAATTGTATTTTTA
CTTTTCCAGCCTCAAAATATGAATTCTTAAACTAAACTAAGCACAATGAA
AGATCTATTTAGTGTTGACTTTCGTGATGCAATCAGAAAAGTAGTGCGtt
ctgaattgaaagaaaaatttggtATCAAGATTCACAAAGAGAAACACAAA
GGAACGGTATGTatattttacttaattttaaGTTAAATCTGATTCATATT
CTGACTTCTTATACTGTGTgcattttaataaaataaaattgcgagtaaga
ttttttgctttcaaaataaGGCATACAGTACATCCTTAAATTGACTTGTA
AAAATTGttagaatttgaattttttaaacaagTTGGATCATTTTGTATTT
AGCTGATATAATTGTTCGCTTGAAACTTAAAGTTCtacaaaaacaaagtt
ttggaTTTGTAAGTCATATCCCAGGTATAatgataaaacatttttttttt
gtcagtaAATGATGACCTCTAGATATTTCTCGACTCTTGGCCTGTGAATG
AATCAAGCaatgatataaaaaaaattttcttagagTTCATCCACAACGAC
GTGTCAATCAAAGTATTTTGGTGTCCCATTAGAAGACGTCCCCTCAAAAA
GTGTCAAAGATGACCAATACTTCCGAATACCGATGTAAgtaagattttca
aattttaactgGGAATTTTTCTTGTTGTTAATTGATCCTCAATATCAATG
AACTTGACAAATTCACATAATGTTGTGCTATACAAAGCGCAAATTAAATC
ACGTGATTTTGAATATTCTATTCATTCCATAatttaattcaattaatttt
cgTGCGCCTTTTATTTTCACGCTNACAAAGCGCAAATTAAATCACGTGAC
TTTGAATATTCTATTCATTCCATAatttaattcaattaattttcgTGCGC
CTCTAATTTTTGCgtctttaattttcgcgcagcTCGTAAAATAGAATATT
CgcacattttgcaattttaagaatattctcTGAGTGTTTTTGACGAAACT
CACTTTCAGTGTGTATTCAAGCTAGATTTTACATCCCAGAGGCATATTTA
CCATGAATCGATTCCCATTATATTAAAAGAGCACTAAGATGAGATTTTTA
CACGTTCAGAACGATTACTAATTCCAAGTGCGCAAAAATAGGCCTATTTC
GCGCGCCTTTTATTTTCGTGCACGTATTTTGCGCGAAAATAAAAGACGCA
CACATATTTTTCGCGAAAAGAAAAGGCACGCGAAAATTCATGAAATTAAA
ATTGGAAATAACagagaaaaattatatttaatcTTCCATCTCTTCAGATT
TCTAGCAGATTCGTTAGATTACCTCAACCATCATGTCAAAATTGAAGGAC
TTTTTCGCAAGTCAGGGTCAGTTGGAAGACAGAAAACTTTAAGGGTAAAT
ATTTTTCTCATCActcagaccatgttcagaccTTACGGCCGTAACACTct
gaaacgaaacggttccgaaacaaatTTGAACgtgaaaattcgaaacatta
aaAGAGAAGATGTTATGAAGCAAAACAGATccaaacggtttcgctccatt
ttttcatctaaacggaactgctccgttttcatGCTCCGAAAAGTTTCGAA
ATCAGTATGAACACTTCCTATCGGTAACGGAAACCGTACCGGAGCGATAC
GAAACTGTAACGTCTAAACATGGTCTCAAACCTAAGAGATAATCAAAGTC
AATATCAAAACATTGTACATAACGACCTATTAAACGCTTTTGTAATTCGA
AATGAAATATGACTCGAAGAACTTTTATATGGCCTCTTTATAAAAAATAG
GTTAAAGGGGAGTCAAtcgttattttctttatttttcaggaaCTCCTTGA
GAAAGATGGGACTTGTTGTTCTTGCGAGTTTGTCCAACCACACGATATAG
CTTCATTAGTGAAACAATTCTTCCGAGAATTGCCAGATCCTCTACTAACC
AGAAGATATTGTCCAGCTTTCTTGAAATGTATTTCGTTGAATAATACTAA
TGACTGTATACCAGCGCTGGCTTTGTGTTGTTTACTGTTGCCCGACGAAC
ATTTACGagtgttgaaatattttgtacAATTTATATCCGAAATGGCAAAC
CATTCATTGGAATCTAAAATGACTCTATCAAACTTAGCCATTATATTTGC
ACCAAACCTAACAGCTTCATCTTCAAGTAAAGAGAAAAATGgggaaaaga
ctttgaaagatttTACGCAAATTGTGGATTTGTTGTTTAAAAATGCGCAC
CTGATTGGTATGGTTCCTGACGCTTTGTTTAATAAAGCCCTAACAATGAA
CCAAGAAGGAGGATTTTGCAGTTCTTCGGGTGATGAACTGGATGTGGCCA
CGGATGAGCATCCAGGTCGTGGACGCAATCTCCAAAGATCGGATAAGAAA
AGAGATAGAAGCAAATCTATAACAGGTTTCATCTTACTCGCAACAGCatt
tactttaatcggattaactttcgcgagattaaatttcgcaatttcgcgag
tttttttgccattttcgcgtgagattcctgattTGCATTAAATtcacaac
aaaattttttgaatcgcTTTTTCGGCGTAGAAACCAGTCCAAAGTCTCCA
TTTGTggaaaaaatggctattttcagctgttttcaggcttattcgcgaaa
ttaaatccacgcgaaatttttcaaaactctgaccCGCGAcgttaaatcca
gaaaattgaaatttgatctcgtgaaatttaatccaattaaagtatcCCTT
TTAGAAGATTTATTactctttcttctttcttctactCCTTTGAATGCAAA
TAATCAATTGCACGATGATGCATGTATTTTTAGTTCAAGATTCCACTCCA
CGCTTTTGTCTCCAGTTTTGCGTATAAAAATCCAACCCATTTTACATCAG
CTttattttagctatttttcgattcgctttttttttcaggttttctgCGT
CGAAACTTCAAAGCGAACGAGAAAACAGAGAAATCTTCTAGTTCGACCAA
CAAGCATGCAAGGTCGAGGACCTGTGAAAAGCCTTCAACAAGCAAGGAAG
ATTTGCTACAAATTCCCACAAGAACTGACTCAAGTATACTCACTTTTTTC
CGTAAAAATCTTTCTCGTGAAaacttaaaatatttcaaatagatTTTGTC
AAATTCGTCGTGATAATTAGGCTGTTCGACATAAAAGTTGTCTTCGAGTT
CTAAAGGTTCATTTCTTGACTTGAACCTTCTTAGCAAAAGTAGTTCTTGT
TCATAACAAGATGATCCCTTGATATTTTAATGTTTCCTAATTCCATACTT
TGAATTTctactactttcgttttcagtaaAAGAATTTGGCGAGCCAGTTT
GGAGGAACCAACACAGTGAAAAACCAAATACTAAACGAAGAAATAATTCC
AANTCAGTAAAAGAATTCGGCGAGCCAGTTTGGAGGAACCAACACAGTGA
AAAACCAAATACTAAACGAAGAAATAATTCCAAAACAAACATGAGTCCTG
TCCGAAAAAGGTAGAAATATATATCTCTACAAATATTGACTATATCACAG
CAGGATCATATGCATATAACTGCACATTTTCATCGTtatagtggggtcgt
ttagcataatttacaggaaaaaaataatatatagctgaaactttctccag
accttctctataggatgcttatgcctcaggaaaaaaatNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaagaaattgcccaaa
aaagggatgttccaccagtgggattttaggggattttttcctgaggcata
agcatcctatagagaacgtctggagaaagtttcagctatatattattttt
ttcctacaaacagcctgtacttTTGTAACACGACTAGGATCTCCAGTTCG
TTGATATAGGTTTGTATTGAACTTAATACAGGCATGTCTGTCTTACCGTA
ACTTCCCTGAAAACATGCTATCTTAAAAAATTATTCGTGGATTAAGTCTT
AATTGATGTTAATGAATATTTTCCTTTGCAGTCCTCGTTTGAGTGCGCGG
GAAGTGCACCACGCTACACCACCAGTTATCTCGCTTGCCAAACTGAAATC
TGTTTCCAATCAAGTAGCATCGACGCCGAGACGATTACTTCAACCTATAC
ACGGCAATCAAGGTATTTCATCTTTCTCACTAAGTTAGATAAAGTCGATA
TTTTACCAGTTAATGTAGATAGCCTAGAAATCAAGGACTTTTAGAAGGGC
TATTTATAAACTTAACGGAatattggaaggagcggggaatCGAACCAGGA
TCCCCTGGTTTAAGGGTCTTACGACATTAACCATTCGGCCACTGTcctta
ttgttgttttttttcacagtTAATATATTGCATATAGAATCATTATTCGG
GTTGAATAATGACCATTCTTCACGGTTTTTTGTCGTGATTTAATATGAGC
ATGAGAATAAATTATTGTGACCGTTACGACACAAAGGCTTCTATACAGTt
tttcatgttgtttttttaagtgACGTAACTTCAGCCAATTTGGAAGTAAA
CGTTCGATTAGCAAGAGATcgcctctacagattcgaacatTCACTTAAAT
AATGGCGGAAAATATGCAagttaaaaatatgaaaaacttaCATATGTGTA
TGTGTTATTTTGTCTCTGTCATTTAAGTCCTACTTCGTACTTTTTTATAG
ATCGCGAGAGGGTGGCTCGAGCATTACCATCACTCCCTTCGAGATATGGT
CCCCCAATATCATCAACAGCATTAAAAACGAAAGTCACAAAAACTGATGA
AAACCAAATTCCGAAAATACCACCACCTACAAAACCAAAACCACGATTGA
CTCGTTCCAAGTCCTCCACTCTGCACCATTCCTCCGGTAATAATTCAATC
ATAAGTCAATCCAGTGAAAAGATGACAATATTTGCCACAGTTACGGCAAC
GACAACTGACAATAACGTCGAGACAACGACACAACAACGACAACCAGTAC
AACCTAAATTGAGTCGTGCAACACAAAAACCTCATGTCAGAAAGAATAGA
CGACAGTCATCATTGGATCGAAGGCGTGCTCGTTATGCAAGGTTAGACGC
GCATCCAAACTCTCAAAGCTTCACACAGTATAGTTCTAGTGCTCAAGTAA
AGATTGAGTTTTGAGTAGATTGCTTTGGTTAGCTTCTACAGAGTCGCGTT
TAGCCTTGCATTGCATGCCTGAGTATCCAAAATGTAGACAGAAAGTTAGA
ATCATTCATAAGATGTCTGAAGCTAAAGGCTTATTTTACTGCACTGTTAA
AAACATACAAAACTAccttaaaagaaagaaaacttgGCGGATTTAAATAC
CCTACAACCACTTACCTAAACTACATTCCTGCCAAACTTTCTTTCAGCGT
ATGTTAAAGTTATTGACATTCTTGATTCGAGAAAATTCTTGAGAGTGAGT
TCTGTATGCAGTAAGAATATCATAAGAGTTTATTAGAAGTTGAGCTTTGT
CGTAACAAACCTTACGCACCACATGTTTTGTCTTTATTACACGATAAATC
TTGATTTTAGTGTTTCATTCTTCATCTTTAGCGCGTCGCAGAGAATACGA
CGGCCCAAAGTCTCCACATCACAAAAGAGTTTGACTGACAGCAATTTGAG
CAACGTAAGTCTCTTTTCACAAGAAGAAGGAAAAATGTTTATATAATTCT
ATCTGACAAAAGTCAGACAGAAGAAATCTCGATTTTTTTTCCGCGGAGGA
aggaaaaaacttttctttcgtCCCAGCTAGCCCACGTGTAAATGAACGAA
ATCCACATGACCCgtgaatttttttccttttcggAAAATGTCGCTATTAA
AAAAGCTTTTATCTTATTGCAGACTTAATGTGGTTACCACGCCCTGTGAA
AGGTGTCGTTTGTAACTGTCTCTTTAGCGAAACCTCCATATTCTACATgc
tttacatattttttttataagcatatgaaggctcagatttgcagaattcc
tacgcataacataagcatatatgtcagcctggaatattttcaagttgtca
ttttttatctctttaaagaggtttggtagaggtcaagtaaaaaaagaaat
tccacggctagctacattccactgctctcaaaatcttaaatttcactaaa
aacttggctcggggtgaatcataagcatgattcaaaCGCATATAACAAGC
ATAATCTATGCCTGGTTGCTttaagaacttaagcatacacgagcctgacc
aaggggcatacacttgcttataaaaaacaaaccgacttttgtaatgaaat
tgaATGATTGGTATTTTTTGGAGACTTTTTTCGAGCCTGGATTTCAGGGA
AGCTTTCGGGTGGGGAGCAACCCATAGAGACACTTGTacgttgaaataaa
aataactgaTAATCGTCATTCTTATATTGACTGTTTTACAGCAATCTATA
TCAATGGAAGAAGTATGGTCAGCATCCTCAGGCTTTGATGACGACACAAA
AGATCGCGCATTCGTTGAAAATCAATCCGCTGCTCTTCCGCCCATTGCCA
CTCTCGATTTATCAACTACTGAAAACCATACCCCGAAACCACGCACTGCC
CGACGTCGATTGCCGAAAGCTTCTAGCTCAACTGCATGTTGTAACGGTAG
AGAAAGTTCTTCTAATAGAGACGGGAACACAAGCCCGATTACACCGGACA
AACGGCAAATACGCCGATCCAACACAACTATGGGCGGCAAACGAAAACCG
GCCACGCCGTACAGTGTTACACCCCAAGTGGGTTCACGTAGGTCCGCTCA
AGCTGTTGCTTTTGTTGAAAGCAGGACTCCGTTAGTTTTGTAATCAGGGA
TTTAAGGAGGCAGTTAAAGGTTGGGAGGTTTGGTTTAAGTTTAGGTTTTT
ATCGTTTTCAAAAACTCTGCTATTTTCCTGGAATAAGTTAAACTTGTGAG
AATCTTTGCATCTACAGTTGCCAAGAAGGTTGTTTGTTGATTATTTGGAG
TGTTCATTTTAACTTGATTCTTTCTTATGTGAGAAAGAATTTGATACTTT
ATTAAAAAGACTTGTACTGTATAATATTTTATCGATTAagtattttgaca
aaatttattAGCATTAATTCTTATTGTAAATTTGGCTGTTACCCATTTCT
TTTGCTTAAGTTTCAAGTTACTTTAacgtcttttttcattttttttttca
atagaatTTTATTTCACAAGTAAGActacaaaaaatatattaaattttat
ccaaagaaattttttcaaaggtGAAGTTCTTTATTTGGGGATCGTGCACa
aatgaatttttaaagactTCGTTTGACCGACTTTATTCGAATTAAATTCG
TTTTGATAGGCAAGTTTAAAGAATTTTCAAGTCGAAATTCTCCATTTTGT
AAATATACTAAATAAGTTTGTTCtgttttgacacatttttaaGCACTTTC
GAATCATCAAAAGACTAAATAGTATCCATCACTGGCAGATCTTTCAATAT
TCATGTAAATTTGATAATGCTTTCTATAGAAAAATTCTTGTAGTTCTTGA
ACGAGCTTTGTTTGAAACTATGTATTGATTTGCTTTTCTCTCCAGATTTG
TTTGACACTTGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00056643TCONS_00056643Clytia hemisphaericatranscript
TCONS_00056644TCONS_00056644Clytia hemisphaericatranscript
TCONS_00056645TCONS_00056645Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00056645-proteinTCONS_00056645-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_279supercontigscaffold_279:3918..12480 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.89	7.85	6.15	6.47	51.34	39.55	24.28	25.63	13.67	16.12	10.53	8.48	6.12	6.29	9.21	11.61	20.82	17.31	3.57	4	9.46	8.57	24.67	22.62	22.04	23.36	4.84	3.06	18.91	20.54