XLOC_030549 (gene) - C. hemisphaerica

Overview
NameXLOC_030549
Unique NameXLOC_030549
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_14:589755..593450+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030549 ID=XLOC_030549|Name=XLOC_030549|organism=Clytia hemisphaerica|type=gene|length=3696bp|location=Sequence derived from alignment at scaffold_14:589755..593450+ (Clytia hemisphaerica)
CTCAAAACGCAAAGGATCATCATACAGTCTTCAAAACATTGCATTTCAAA
CAATATGGTAAGAAGTATCATTTTTACTCTCAAACTGCAATATTTTCATG
AAACGATAAGCAGATTTTTATTAAGTTCAGTTTCGGTGGACTCTCAATAA
TCTTAAattctataactcgaatcttTCTAGTTTCGAGTTCCCTCAGCTAA
AAAGTAGTGTAAAATcctctctataactcgaatcttTCTTTGATTCGAAA
AAACactcttggtcccttgaagatcgaattagagaattgcTGTAAAGCTA
ATATAACCTGTAATATATTTGATTGCTTTTATCATTCtctattttcacat
ttttgcaTGTTATAGGGTTCATTCACTATCTTAGCTCTGGCATCTTTCAT
CGTTCTTGCAGCTGTAAGTATAACTTGACGAAATTTTGCAACGAATACTA
TACCTAGAGAGTACGGATCAATGTAAAAGATATAgttctttcaaaaaaga
caAAGGGTTTTATCCATCACTTTGTAAAATCTTACCCAAATCTACATAAC
ACCGTCTACATCAGGTCCAAAGGTTCACCAACAAAGAATTTCTCTGGGAC
TAAAAGCTTTGTTCAAATATTCCGTTCAACTGATGAATTCTGTTTCTGCC
TGAATGGTTTTGACAGTGGAACTAACCGCCAAGATTCCACCCTACCGCTT
CTTTGCAAATTGTACACCCCCTAAAAACTTTTCCTTGCAATGAATTATCA
ATTTTGTGCAAAGATTTTGAATGaataaaagcaaaaagtattttCCGATG
GATGGATCCAGCAATTTTTTtagtcatctcaaaagtaattTCTGCCACCT
TAACCCCTATTCTTTAACGCTTaatcaatatttcattttctcttttttct
catcAGACAGTGATTATCATTTGGAGTTCAATGAAAAACAACAGAAATAT
GACGAACGCGTTCACATTGATAAACAAAATGGTATCCTGATCTACAGAGT
GCCAAAACACGCTGGAGTGGTTGCTGCTCACTATTTGAAAGATTTCAAca
gtttttattcaaattctcgGTAAATGAAAGACTAGTAAACcccgtcgttg
tatttcgctgcataTCAAACTTGCAATTGGCTCTATGTCTATATGTTCAC
TAGATACAATATGtctttccaaaccactctccctcggcaatttctatttt
ctataagaactctttattataagaagcactattcccgcgttcctgtgtcc
aaagAAAGACATacgcttgctagtctaggtAAAAGTGAGTGCTCGATTGT
TTGTAAACTAACCATAACATTTCTGCATTTCCTTCCCCTTAGAAATTGAG
CGTGATCAGGATTTTTGTGGACAAGAAATGTTACGTCTCAAAAATGTCCC
AAGATGAACCAACAATGGACGAAGTAGAATTTGGAATGAAAAAGGTTAGT
AACATTTAAAAAGTGCACTAACTTTATGAGTTCTCTGAATCAACTCATAA
TATAAATTAGAAGCTTCAGACTTTAGACTTGATACAATCTTAACCGTTTG
TGCTTCTAAATATAATCCCACTCACGTACATAGAAAATTATCTGGTATGG
AAagtcaaagtaaaaaaaaatctttcaaagttACATATCATCTTTATTTC
ACTACAAGGCCGGTGGTGTATTCGACTTCANaaaaaatctttcaaagttA
CATATCATCTTTATTTCACTACCAGGCCGGTGGTGTATTCGACTTCAGAA
AATACTGGATTGAAACAGAAGAAATTGTTCCTATCGGTCATTCCAACAAA
TTGAACCTTTCacccgccattttgaatttctgtGGAAGTTTTGATATCAT
GGACACTGTGGAAAGTACGGACCAAATGGAACAAGCCCTCAAACAAAAAG
CTATCGGTAAGAGGAACACTAAATAGTTTATTTATAAATTACTGTATTCC
TGTGAAATGCAATGCACGGATCACTGGATAATCATTGATAGAAAATGACC
CTGATAATAAATCGCTTCTTACACAATCAGCATataaatatattgagaat
tttgcttatttcctcgtttttcgaaatttcgaaaaagtcttATTTAGGCT
ATTTGTTAAATGTAATCGAATATTCAATTCGGGAGGGTTTTATGGGCTTT
CAGGAccatattctgagccttattagaccattcttgaacttttggatcct
cagatcctaaggtcctaagtctagcgttaaaaatCAGAGTTTAAACTTTA
CCCCTCCAACTTAACTtcttagagcgcttccaaatcgtttgtggctatca
gatttcgtgggaattccccttttttctgaaatacAAATTGTGACCTTGAT
TGTAATCTAATATAGTAGAGTTTCTtcaactcaaatgtctccttaactcg
aacaaattttctcgttccttcagttaacaatgccttataaacctttccTC
CATAACTCGAGCAAATTTGTGTAGTTCCCCGTGTGGCCGTGTTCGAGTTt
cagagactccactgtatttatCCCACAGCTGCCTCGGTGACCTAGTGTTT
TTTTCTCGCTCTATTCAGTTTTGGCTCCCTCAGGTAAATGAAACGGAGTT
CTACTTAATACTCGACTGGaatattttaacaattttgactTTACTGTAGG
CCCTTAGTTTAAACAACTATTTAGCAAAGTTTTCAGCagtattttctttg
aaatttttagctGACTTCACAAACGGGAAAAGTAAacgattgattgtcaa
taacTACGTTTACTGCAAAAATGATGGCGCACAGATGACCGCAGAAATGG
TGAGATGTAATAACCGATGGGATAACCTCGAGTTCAGATGCAAAGTTGTC
ATTCAAGGCTTGTGTACATACCGTGTTACATGCAAGCAAGCTGGTTCAGG
GTATAATTGCCCTGGAGTTCACAAATACCATCATATTAACTGCTGTTCCC
TCAAATGCAAACTCTAAAGAAACAGCTATctttcttttctaaaaaaatag
gCCGGTTTCAAAGATATCCGTGAACAGTTTTAACTTCTTGGTACAACATT
CACAAATGCCTTTGTCAGCTTCTTCTCACCATAAGTGAACTTCAGTGGCC
CCTCAAttcatcacgcaatcacgcaattttctttcgaaattcacgcattt
acgcaaattatttttcaattctcatgcattcacgcaaccgcaaaaagccc
attcacgcaaaccgctgggggcctggATTGAATGTCCTTTTCTTCATACT
CTTTCTTATTCTTGTTGgtatttgatttttatttctttaccCTGCAATCA
TGATCGAAATCTTTTGAGAATTCAGCTTATTTCCGCGAGAATATcaattt
tgggccatctctcaaatttaatcggatattttatttcaatttggctcggg
tttataggcctccaggctatattatgagccttattggaccactttttaac
ttttggatcctcaggtCCTAATTGtattaagtctcatgttaaaactcaga
gttaaaactctacccttccaatctactttagagcacttacaaatcgattg
tggtttcaaaacttcctggtggatttcccttttttctcaaatattacgac
catgattgtggtTGGTGTAAGTCTGTTAAGTTTTTTAAGATATTGTCTTG
AATTCttctttgataatttttaacGCGTTCCGGTTTCCATATCTTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048004TCONS_00048004Clytia hemisphaericatranscript
TCONS_00048005TCONS_00048005Clytia hemisphaericatranscript
TCONS_00048006TCONS_00048006Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048005-proteinTCONS_00048005-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:589755..593450 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.06	0.03	0.1	0.09	0	0	0.18	0.13	0.09	0.07	0.19	0.07	0.98	0.98	0.79	1.01	0.08	0.15	0.55	0.68	0.13	0.12	0.54	0.48	2.57	4.17	0.09	0.12	1.9	2.88