XLOC_010039 (gene) - C. hemisphaerica

Overview
NameXLOC_010039
Unique NameXLOC_010039
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000279:71863..78977+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_010039 ID=XLOC_010039|Name=XLOC_010039|organism=Clytia hemisphaerica|type=gene|length=7115bp|location=Sequence derived from alignment at sc0000279:71863..78977+ (Clytia hemisphaerica)
ggtgagtatgacaaatttggaagtcaatcgaattggctgtaagtataagc
agactgGGCCTTTAATtggctttgaaaaatttcaacaagggtagaaattt
ctccaactttcaacaatgatgaacctattaaacaaaattaaccagcACAT
TTTTTATCGTTCTCCTTCTTCATCTacatgaagcactcaaagttgaATAG
ATTTAATTTGTGTTGGTCTGCGGCTTTGGGAAGTAATAATGTTTTCCGtt
gttttctatggaaaatggtaagaaacttaggtttacaagtgtcatttagt
ttttgctagCTGTAAGAATGGCCGGATCCTGGATGGCTTCCCTAACTGCT
GAGTTGgtattgtgtattttacagagcCCACCTAAAGTTGCCCATTTTGC
CTAAATCACCCTTAGGACAGTGTAAGTGGACCTCAATTTTGCAGGATTAC
cattttacaagctttttaacaatttttgccTCGTTAACCCAAATCCTGCA
ACCGCTTTACctgaaattagagtttttcctGCCTAAATTTTTTCGTATTC
ACAGGACTCTACAGGACTCTATTCTTAAccacaaaatacatcttttggtc
tatGGGTGTTTTCTAATGTTCTTCCTTCAAAGAAtgtggtctgtaaaata
caaaccaaagattttgcacactgtcTTGGATGGACAATATCTATCACTGG
TGAAAATATCAAAAGCTCCAGTAGTTTCTAAGCTCTAGTAGCAGGTGGTC
AgcatgtattttacagactggtcTGCAAAGTACCAAATCTCAcggtaaaa
atgtttttctgttACTAACCTgttttatttgacaaatcagcCTTCAGGAA
CAAATTTCAGGCAAATCAAATCAATCAGTCAATATATACATGGTTTTGGT
CaagtttacattctggtctgtaaaatactaacCAGACATGTGGCTGAACC
ACAATTTTGCAACTCATCTTCAATTATCACTATCTACCGCTGattgaaat
ttcaaggtcaatAGCACTTTTTGTCACCCCCTTGCATTCCAGATTCAAAT
TCACTTTAAATTTGTCGCTTTTTTAAAAAGGCAACAAAAATCTTTAGGTA
AGGTATTTAAGATAATATGAAATGCCAGAGACTTGCATTCCACATTCAAT
GgccatgttttgtttttgatttttttataccTTGAATTTTTTCCCTTGTC
ACATCTTATGTGGGTCTGGGCACAAATCTGTGAAAGTCATAAATTAAAAC
CactgcttgaaaaaaaaattgaatatacaaACTGTTAGGGGGAAGCAACT
TTTCGGGCAGTGGAATATATCATCCTACAAAGAAGTTTTAAATGGATAGT
TTTATATACTCAATATATCTTTAAGATTCTAGATaatgaattcaaaatat
aaTATGGCAagtataaagaaaagaaaatcagaaGTTAATAATGCTGAACC
AGCCAGTAAAAAACCAAAGCAATCTTGGGTAAGTTTTTTCTTGATCTACT
GAACATAAAATTCACCATAAAAATGCGCAGAGGGTTTCAAACTCTCGCCC
AACTATATTTTATCCCACTTAAATACATAGCCATTTCTTAACTTGTTAAA
TATTCTAGGACCAAAAGTGCATTTGaactctttttggacctacctccggg
tgccccggtggaggtcctataaattaacccatgtccgttcgttcgtccgt
tcgttcgtccgtccgtccgtctgttaccagNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttaccattttacat
tattcaacacacaagctttatttttccattctgaatttttgtacaattat
tgtcacttttttcttattttcatctaatgttaatcattaggtaggtccat
tcagcatgttgcttgtttattttGCATTGCCTCTAAAAACTCAAACCCAC
ATTTTATTTAGAAAACTCCAACCACTATAAAACCTAACCCTAATATTAAT
AATGCGTTTCTTGAATATCTAGATCCCAATTGTGAATTGATTTGATGTAT
GACAGTAAACAATGTCAGTCTGCAAACAAATCATATAACAGTTTTTCTTG
ACTAGGACTCCTTTAGAGAATTCTAGGTTGATAATTCTGCTGATTCATAA
ATTTTCGAATTAAAGATAATTaatttatatatataatataaacttGGGAA
TTCCGCGTCAAAATAAGGGGTCGGAAGCACATCACACTTCTTCAGTAAGC
GTGGTTCTTGCATCTTGAAATGgacaaattttcaatgtttaGCTTGTAAA
TTATCAAAAAACACATAGTGAATTGCGAAATGTGATacgctaattcgatc
cctgaaggtgttttctgatttctacctctgtttatagaaagatttTAAAT
TGTCTGCATCGGATATGGCAATTCTTCATGATCCAAGTAATCCTACAGCT
GATTTTTGGCCAACACGAGAAAAGACAATCACATTAGAAGAAGCAAAGCT
TGGAACTGATGGTAAAATCTTCTTAAAGATTTAATTTGCAGGAATTAACT
ATGATGTCAACCTGCATATTGCTAAACTCTTAATATGAGTGCCTCATAAA
AGGAAAGAATTTCAATGGCTAGATAACCAAAAGAGCTTTAAGGGGATTGC
GTAGGCATCAGTATGTCTGGTAAAATTAGGATTGGTGGAAATTCTATTTG
GCAGATGGGGAAGacaaattcacaaaattttctttttgaataaagTACCT
TTTGTCAATCCAATCTTATCTCAATATAGAAAGTCGGTTCTTCATGATAA
TTTATTTTCAGCTGCTTAAAATTTCTCGCTGAAACCTTTTATTTTTTAGT
GCCTGTTCGTGTTTATGCTGATGGAATATATGACATGTTTCATGCTGGTC
ACGCGAATTCATTACGTCAAGCCAAAAGTCTTTTTCCAAATACTTATCTT
GTTGTAGGGTGTATGTAGACTTTTATTTCCTttactttgaaatttcgaaC
ATACGATCAAAAGCTTTCCATATTATCAACCAAGAGGCTTTGAAAGCATT
TTATTCAATGTTTTTATGTGAGTTTTTCTTGGAGCAATTTGGCAATTACT
GTAAGTTTCTTGAAATAATTGTGAAACCTGACACTATATCCCTCttggtt
cttatttttttagcctgCAGTGACCAAATGACTCACAAATTGAAAGGTTT
CACAGTGATGACAGATGAGGAACGTTATGAGATGATCCGTCACTGTAGAT
ATGTGGACGAACTCATTACTGATGCACCATGGACTATTACACAAGAGTTC
TTAGATAAACACAAGGTCTGATTTGCCTGTCAGTCGAAATTTTGTGGCAG
GAACAGGCATGAAATACCCTTGAAATGATAACTAACAAATTTTAATTCGC
ACTTTTTTTACAGACCACAATATTTTCAGATGTGCCCCTGCGGTCACCAG
TTATAAATTTGTTATTAGAAATTTCTATGTATCATCCTTATTGAATAAct
tatggaaattttttagaTTGACTTTGTGGCACATGATGATTTGCCATATA
ATTCTGCTGGTCAAGAAGACATCTACAAATTTGTTAAAGAAGCTGGTCAA
TTTGCAGCTACTGAGAGGACACCTGGTATTTCAACGTCAGATATCATCAC
AAGAATTGTACGTGATTACGATATGTATGTTCAAAGAAATCTTCAACGTG
GCTATTCAAGACAAGATTTGAATGTTGGATTTATTAAGGTATTATACTTT
TCTAGCTCTACCAAAGCTCCCCAACATATATTATAGAACCTACCATTGTA
GGCTGTGTTTGTACTTTAGAGAAACGGTTAATGATAATCTGACAAAGTGC
TTGATATTTACTGCTTAAGGAAGAATAAATATTTTCCATCACTAAAGTat
ccaaatttcttttttaaacaaCTTATCTGCTCTATTTAACCTTATTAAAA
GTACATGACAGTACAtaacaaatctcttttttctTGTACATTTTGAACAA
GTGTAGCAGCACGAAACTTTAAAGTTCTGtacttttatagaaaaaaaact
ttctttttttaattttatttataacCTTAGGAAAAAGAAATCGTTGTCAA
ggagaaatataagaaaatcaAAGATCGTTCTCAAGAGTTGATCACAAATT
GGGAAGATAAATCAAGAGAAGCTATCATGGGTTTCATTGAAATGTTTGGA
CCTGATAGTATGATggtatgaaaatttctttgttcttatttcAATCTTTG
ATTGAGGGCTTTTTTGCTTTATTGGTCGCttcttgaaaataatatttcat
atttGTAGTAGTACCAAACTATACTGTGTGGTTATGAATCCCCTAGGTAA
CAAATAATGGAGCCCCAGATACATATATCAACAAaaattaggaatttttt
ttatttagatagGTCGTAGAACTGTTGATTTTCTTTCACTAATTATaaga
ttttgtttctttttttacagACTGGTTTATGGGAACGAGGGAAGAACAGG
CTATCAGTAACCAGCAGAAGAATCCGAGAAGCTATTTCACCACCGCGGTC
ACCTATGGGTGGAGAGGGGACATCTTATGATGGACACATCAGTAGTGACG
ATGAGGATCAAAGTGATATTCCAAATGGAAGCATTGAAACCTATAATAAT
CTTGATGGGCTTAGTGATACTGAAAAATGAGAAAGTAATATTTTTATACA
TCATTATTGTTCAAAGTTTTTTACTTAGTAATGGTGTATTTACCAATGAC
ACAAAAGGAAAGActttttacaaacttttttaaCTTGCACGGTTTGTGAT
GGTTGGTGATGTAGATGTCGTTGTAGATTCAAAGATTTGATTTTTGGatc
tacctggaggtcctataaataaccgtcgttcgttcgttcgttcgttcgtt
cgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcg
ttcgttcgttcgttcggttTTCAGGATCTTTTCCATTAATGTCTAATGTT
CTCTCATTTGGCTAACTTTCATTATCAAGTAGGTCCAATCAGCAGCATCC
AGCTTGTTTAACTAGTTTTGATATGAATTATTCCACCGACCATTTAATGA
TGTGATTATTGAttgtgaaaataattttcatcacTCGCATTGACTAAGTA
ATGTAATGTGACTTCTTTTTCTAGCTGGAAGAATGATGTGACTAGTGTTG
AACATCATTGAGAAAATGATTGTAAAAGGGAAGAAAAGTTAATGGTAAGA
TTCTGGTCTTCAGTCGTCATAAAATGTTACCCTTTCGTGATttatttgtc
aaataaaagCTTGTTATTTCATCGGGGTGGCTGTTCTacagtaagaatat
ttttatagaaTTAGGAAATCTTTTCggtattttttggcatttttcatact
taaaaaaagtaattctataattttgattcaccaaaggtttttcttcaatt
tttaattgcttttaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017904TCONS_00017904Clytia hemisphaericatranscript
TCONS_00017905TCONS_00017905Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017905-proteinTCONS_00017905-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:71863..78977 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
PCYT1BPREDICTED: choline-phosphate cytidylyltransferase B isoform X2 Homo Sapiens
PCYT1Acholine-phosphate cytidylyltransferase A Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.12	16	8.25	7.39	57.41	43.82	47.05	52.08	40.32	38.55	45.12	27.14	28.48	26.3	25.02	23.96	38.3	40.11	19.46	25.42	42.96	38.92	62.37	60.48	37.73	37.74	53.11	39.35	95.17	74.52