XLOC_009476 (gene) - C. hemisphaerica

Overview
NameXLOC_009476
Unique NameXLOC_009476
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000254:291567..301868+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009476 ID=XLOC_009476|Name=XLOC_009476|organism=Clytia hemisphaerica|type=gene|length=10302bp|location=Sequence derived from alignment at sc0000254:291567..301868+ (Clytia hemisphaerica)
AAAACTTTTGATTGCCATGCCAGAGCACAAAAACACAAGCTGTAACGACG
ATTTTTCTATGTGCACATTTTTTTCTAACTCTCTGTTGTTTCTCTTGTGA
TGTTGATATAGAAAACgcttttaagaagatttttttggaaagaataatTA
TGGTTTCAGTTTGATGTGGCTTTAAAGATTTCTCGATGGTAagtttttag
ctttttcgcGTAAGTTACAGGCTGCTGAAAGTCTATCTTTGATTTAGCCT
GGATGCCCaagttcaaaattttagaaaaaaaaatttacctcaacatacaa
agttctaaaatcatagagcttggtctccctagagaatgaaagtgcaaacc
agaacataaaatatcaaaaactagactgtgaaatagtttacagcctgaaT
ATCCAGGCTATCTTTGATTTTACAGGGGACAAAAAggatagaaaaacaaa
acattaattaaATTTGGTGTCTCAGATTCTAGCTAcgagtctgttcctct
aaagaatcctgcattgtaacacgtatgcgtgaagtcaggtaacttgcatt
agtggagggaaacttgcatagccatcaaatgactgaccaatcaaagcagc
tccgctcgcagctctctactctaccatttttgttttgatttaactttata
ttttaatgaccagccaggtcattcatttgagggctatgcgtgttagcctc
cactgatgcaagttacccgatctcacggtatgcGTGATCTGTCGTTCTTT
TaaccatatgtagttaattcccgtgataaaaaaagacgaatGAATACGta
aggagggggggggggtacagtcacttgttgttttttatgaaatttgtcat
tcttttgtctatttttagtaatgcagtaTTCTTTAAACAAACCCCCTCTA
CATAGTAATAAAACTTCGACTTTAGAAAGATGTATACTATTAGCTCAGAG
AagtgtaaagagatggaaaaacagcttctttaaaacaatggaaatacggT
TCGTCATGTACCAGGTCCTTTTCCCCTAAGGGAGTTAGTTTTAGTTGATG
GATTTCTTTTGctgttgataaaaaaaatctgtATGATTAGCGTGACGtga
cgaaattcttttgtttttagtcTAATTATGCGTAAACTTATATTTTGGGA
ATATCTCACGCAGacctagacgatgttatcgtccattacattgatagtaa
aggcgggaaaaatggcggtatggcgttatggcggtgaacgggaaaaaaat
cggcggtagagtttcgaagaaacggctgtaaactcttttcagcaaaaaac
ccgatttttcgttttctcaagacaacgaaaatattttgttatcaaaagca
aaaataataacatctaCCTTATTCCCAAGAGGGTCCCAAGAgcaattaaa
aatgacaaactttttctctttgtttggaACGCAATATTCTATCAAAACAA
TGAGAAACGataaattgttgttttgattgcGAGAGAAAATACAAGTATCA
GATTGGACGCGATAAAACGAGCCGCAACGAGAGTTGTactaacgcacttt
gtaataacgccacactttgtaatacctgaagcactttgtaataaaaacTG
ACGCACTTTGTAATGAATGACCTAAcgcactttttaataaaaattaacgc
actttgtaataccaaaagctgacgcactttgtaataacaCCCTACGCATT
TTGTAATACAAAAAAgctgacgcactttgtaataacatctgacacacttt
gtaataattTAGAGAATTTAAACGTTTTTTACCACCTGataacacaggaa
aaaattttcgatttccaaggttggaaatctcaaattttcttagttggaaa
aaagataaaatccaatggaaaatccaacctgaaaatgtgggacattgtcc
aaggttggaaatgttgcattttccatggcttggaatNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaa
aaaagccaaaatccaagcttaaacaaggttggaatttttaaaaattcagt
tggaaaaaagccaaaatccaagcttaaacaaggttggaattttttaaaat
tcagttggaaaacaaggttggaattttcgaaaatctaggttgaaaaaagc
caaaatccaaatttaacNTAGCTacacatcaaaacagttttgagcgaaaa
atcgcttgtggttttctcaaaggagcatgcgcagaaaatggttagaaaaa
cgtaatttccacatggattttttaacgttttccaaactgtttggagaaac
acaaatttccaacccaaaaagtctagttttccaatcgaaagggttgcaat
ttcacaaaaatgtaatttccacatggatttttaacgttttccaaactgtt
tggagaaacacaaatttccaacccaaaaagtctagttttccaagaaaggN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtataaaaccaaaa
tttccaacccaaaaatatcgaatttccaaccttggaaatcgaacattttt
tcctgtgtaatgTCATCCATTTTGCCACCGCTTAAAAAAAAGGACTCCTC
TAACTTTTTACCACTTTAATTTCAtctatttcattttattttttctcgtT
TGTATTAAACTTTTGAGCAAGCATAATCGTCTGTATTTGACATTCGAAGA
ATACAAAGaattttatctataagaattgcTCAAGGACCAAGCTAAAAGTT
AATatgatgaaataaaattttaaacaaatttagCTTACAACCTACAATGG
TGGCCAAAATATGATTATACCTTTTATGACATTACAGTATTTCCAAAAAG
GATACTTTTCGCATATTCTGTCTGCAGGGAAGATAAAAAGGCTGTAGACT
TGGATAGTATTCGAATAGCGCTTCGTCGTGCAAACGTCatgattattact
tctctcatttgaccgaaattcaatcccacaatccttttcgtcttatttca
aaagtcgtgaaagttattactttttctttgtaattgagtgtaatttgcgt
gcaagTGTAATAAACGCAAAGtgtgatgggattgaatttcggtcaaacag
aaaaatcaatgtctatttttagattcgcgacGGTATGCTATTGAATACaa
taaaacctctaattaacagacactctaaaaggcggataCCTCTGATTAGC
CGACAATTCTATTTTCCCCGGCCATTTCCTATTTAaatcaaatcctcata
aaagaTTGGCGGACCCTCAATTAACGGACCCTCCGATTAGCGTTTAATTT
CAATTCGAATTGAATGGCGGTTTTGTGCTCTCCTCCTGCAATAACTAATG
TTAGCTATTTGAGGGGCAGAGACTACTATATGTTAGAGAAGTACCtaaag
ttttttctcatttttgcttTCACCAAATAGGTTACACCTTTAGACACCAT
ATTGGTTTTAACTGAATGGAAGTAAGACGACGTTCCCCTAGCAACAGTGT
AAACATGGAATCGTTACCTTCGTCACAAGAATCTACTCCCGAAATGCCAC
GCAAAGCGGATGATAAACATGAACGCGCGCCTGAAAACGAAGACGAACGC
AAACAACTTTCAGATGATTTAAGAAACTTGGACGAACAATCGGCCCGCGC
GGCCCGCATGTTGGTTTATAAAAGGAATAAATATGTGTTTTTGTTACAAT
CAATGCTCCTTGGGATTTCATACTCCATCATTTGGCCCACTTTATTACCG
TATATTCTTGAAGATTCAGCTCAGGTCAGTGTATTATGATATATAACAAC
CTTGTTCActgtgtattatcagctttctgatgcttactgatagcgctaga
taataccctggcattgtctgTTTTTCGAATGCGTAAGATGACgtaattca
aaacaaaacgtcagatttcatttgtttctggatttgaaaccattgcatta
CAGTGCAACTTTATAACGTCAGATTTTTTCATGGCGTATTGTTTCGAGAA
GTTCCTTCTCTGAGAGGGGGGACTcgcgcatcagccaacaccagggtttt
ctctggcgtccataagtaacgtaaataTATATTGGTTGAATATACAGTAG
TAACCGTTAACAATCCaacccagttggcacacaacgttgtttcaacgtcc
atctaacgttatatggacgttatgaacattagataaacgttgaaacaacg
ttgtgtgccagctgggaaaagCTCAAATGCAAAAAGTAGTGATAGTAACG
CTGTACAGTCactatgaaaaaaaacaaaaacaaactggTGCATAGTTCAC
AAAAGACATTTGCAGTGTTTTTTTAGACGGTCGGCTTGATTCGTCTCTCA
CATTATTCACAAATATTTGCATTTGATTATTGAGCAAATTTTTTATCGTT
AATGGCAACTACAGTAGGTATTTatttagcctgtaccaaactcttcttcg
ctgaGTGAAAAGATAACGCGAAGTTTGGTTTGTTACGGTTACGTAACATT
CCATGTCTCagacattagcgagtttatgtatttgcacttttgaggacggt
gaAGCGGTTTGGAAAAACCCACAactctgacccgcaaaatcgaggacggt
gaAAGtgttgatttaccgtcgtcctcggctggttaggatctagtcaaatt
agaaccttaccgtcttcgtcactgaaaaacacacatacataaactcggga
TTTTTTCGTAAGTGGTGGAGGATAgctatttttagcattcaatTTAGCTC
AACTAAAGTGACCTTACTTTTAACGCATCAATGCAATGGTATCTTTCATT
TCTAAAAAGAGCACTCCTACGCTTTTGTTTTCTCGGATTTTATCCCAGAA
AACTGACACAGAATCTCGCTTGCCAAAACAGACtggcaagttttttcaaa
atatatgaaAACGTCCCTTGGGCGGGGTGGTACACAGTAGTTATTTGTTT
CAACATCAATTTCTTTCAGAGGTAGGAAGCTTTTAAAGCGGGTTGTCCAC
TTTGTATAAAGAATGTAAGAATGTTCTTGAGGGATATCGacatgacgtca
cttttaacttttgtAAAGTTCTAGCAGGATATCATGAGCCCCGCTGGGAG
GGGGCATGGCCCTCACCTTTTTTGCAgactatttttttcaaaagtcaaaa
acatttttcatgtttttttttatgttgcTCTGCCGTTGTGGGTGACAATC
TTTTCCCAAAAGTTTTGATCCTCATTTCAAACAGCTCTCCAGGGGCCCAT
GACATTCACAGCAGATAGAAGAACTGACATCAGTTTAATGTACCTTTTCG
Actgtagactagtaaaccacgtcgttgtatttcgctgcagattaaacttt
caaatgggattaattttttttatatgttcacagtccttttttcgcaccta
tagacaatagaaaaatgtgtcaaaaaaggcctgggacagttttagtggga
taagcggacaaaaaaatgcccgcgcagcaattagcggctacggtcgaaaa
ggtgtatgcAAGACATTTAAGGATGATGGTAAtgagactgggttcgagtt
tgctAGGAAGAATGACGTTGAAATATATGCAGTCGTTTCTTAGACAttct
aaaaaaacaatgaatttcATCCTCATTTTTTTTGTATACTTTGTGTTAGC
CAAAACCAATAACAATGCTCAATGTTAATGATAACAGAGCTTTATACTAG
TTTGAGTACtctcatttttttgtaaattcaatACCAGACCCCTCAAGCCG
ACCGTGCCATCAAAATTAATAGCGTatataaaagttttattttctaaaag
tttcatttactttcgtttttagaTTTACAAGTCAGATCAATCGCAAGTTG
TCAGTCGTATTTTGTATGGAATCACGTACGTTGCCTATCCTCTAGGTTCN
ggacaaaaaaatgcccgtgcAGCAATTAGCAGCTagggtcgaaaaggtgt
atgcAAGGCATTTAAGGATGATGGTAATGAGACTGGATTCGAGTTTGCCA
GGAAGAATGACGTTGAAATATCTGAAGTCGTTTCTTagacatttttttgt
aaattcaatACCTCAAGCCGACCGTGCCAATAAAAACTGATAGTGTAtac
aaaagtttcattttttaaaagtttcatttactttcgtttttagaTTTACA
AGTCAGATCAATCGCAAGTTGTCAGTCGTATTTTGTATGGAATTACATAC
GTTGCATATCCTCTAGGTTCAATGGTGTCTGCAAAACTTGTAGAGAAACT
AAACTTTAATACGAAAAAAATGGTGCTGTTTTTAAACATGTTTGAGATTT
GTGGAAATCTATTGTTTACGCTGTCAATGATACCTTGTGCACCGGCTGTA
GGTAAGTTCATtgagttaaaggttttatttctacataagtgtttccgctt
catatcagacacatatttcatatcaggaaagtgtcttgctattgttatat
tatgctgatataaacaaaaaaagttattatttccctctttctgaccaatc
ttgctccacatccgtgtcaaagccaacgtgaaaaagcttgtgaattaaaa
ttgacgagtaagcaaacgatatcacttttacttaaaaacaaaacctttaa
agtccTGAAAGGGCTAGAGATGAAACTCTTATTTCTCGGTTTTTCTTCCC
CTCTTATTTCCCATGgcacacaaacgccggattgaaggCTCAAAACTATT
TTAGGatataaaaaaatgtgcaaAGTGAAATTTAAGAAATCGCTCGATTC
AATCCATCATTCTGAATGTGAGACACTCAAATTTAAAAGCTTTACCACTC
TAGCCCCTTGGGCTTAAAACTGAATGGGTAAATGGGTAATTAGTTTTAGA
GCTTACACACGATTCTGTTTCAATCACATTTGCCACATCCTTTTAACGCA
GAGTGTACTTTAGgcatacaaactttcgcgagattgaaaaattgcaaaat
tcacgacatttaccttcgctaattcgaacacaaaaaatcttttttgcgag
cataaacttccGAGAGTCAagacataaaaattaaaattttcacacgAAAA
ATAGCTAAGAGCAAATTCTAAAAGCTTTACcactctagccctttgggctt
ataACTGAATGGGTAATAGGGTAAACAGTTTCAGAGCTTACACACAATCC
TGTTTCAATCACATTCGCCACATCCTTTTAACGCGGagtgtactttaggc
gtacaaactttcgcgagcagaaatttTCACAAGGTCgataaatcgcgaaa
ttcacgacatttatcttcgctaattcgaacaaaaaatctttttcgcaagc
ataaacttcCGCGAGTCAagacataaaaatgaaaattttactcacGAAGA
ATAGCTAAGAGGGACaaaatacttcttgaattggAGTGAAACTTTTGTCT
TTTGACTTATGTTGCCTTGCCAAGTTAAAAAAGtgtcataaattttacat
tttattgtaATTTAGAAATGTTACAGATTTTGTGAAGAATTTTTCGCGTg
cataaacttttgcaaatgatcctttcaagaattttcaaagacatttactt
tcgcgaaaagggctaaaatttgcgaaaatcgcaagaaagtttgtacgcct
aaagtagtgtGAAAAGAATGAATGATCTGATAAGAGATTAACCTTAAACC
TCATTGTTTGTCATACCTTTAGGTCGATTCTTGGCTGGTCTTGGTGACGC
CTTCTACGTCGTCCTCATGAAAGAGATGCATCAATACACTGAACTATCAA
ACGAACGTCTAACAATCGAATGTTTAGCTGCTTTTGTGCTTGGTGTCATT
CTTTCCCCTGGCATCAATATTGTGACCACGTTCATGCATTTCTCTTTAGG
TTCATTAACCTTTGATGCCAGTAATTTCCCAGGATTAACAGCAGCTGTTT
TATTCCTGATCATGCAGTTTATTATCGCTATCTTCATTAAGGATCATAGT
GATGAAGAAGAAACCAATCGCGAGAAATCCTCATCGGGCGCCACGCCAAA
TAAATTCATTGATAGTGAATATATTAAAGATCTTGAATACACTGCTTGGT
TTGTTAATGGTTTTTCGTTTGTTTATACCTATATTGTAGCCTTATTCGAG
CTCATTATTCCATTCTTAATGTATGAACGTCTAAAAGCATCAACAATCGG
AGTCATGCTTTTATATGCAATCATCGGCACTGTGTATGCAATGTTTTTGT
TAATGACTATGACCGTGAGTTTTGATTACCAGCCTGAGATCTTTATCGGA
ATATCGATCATTGTCGAGATCGCAGGCTTATCATCAGTATTATATTTCAC
TTGGTTAACACAATACACAATCGTCGCTGATATCATCGGCATCGGGATCA
TCGTAGTCGCGTTGACTTTGTTATGGAGTGTTGACGACGTTCTCTTCATC
AATTTCGTCCAAATGTTTGTTCCGTATCATCAACGTGAGAAAACACATAA
TGTTCGCAAATTTATGTCAAAATTGGCTTTCGCTTTTGCTGGTATTACAA
TCCCTGTGCTTTACCCGacaattttattttactttctaCCTGTTTTGATT
GTGATTGTTTGTGTCCTGTTTGTGAACTTCGTGGTCATCAAAGTTGTTTT
AACGAAGAGATCGAAGTAGTGGGGTTTATAATTATGGTAGATCTTGTATT
GAAAAAAACACACATTGTCAAGACTTTGTCAATCGCAagatatcaaaaat
caaatcaatcgagTCAAATAGAACACAATAGATGAACTTAAATTCGATCG
ATCGCCGATTTTACTAGTAGAGCAACTAACCAAACATAATTACCGTAGAG
TTTAGTTTTAACCAATCAGCGCCTGAGAAAGACCAAAAAAAGTGATACAG
AATTTTCTATCATTTGTACAGGATGTccggaaaaaagtatcgagtcgtac
cacttctatagaaagaaagttctgtgtgtgtttcactaaatttgcaatgt
ttattaaagtttctctctgtgtcatGTTAATTGTCATCTtctatgaataa
cttttacaaaaaacaattctcaataactttaacgtcatgcAACACAcaca
acaaccttctactcagaatcatgttcgagctcgatactttttttccggac
accctgtattttgGCTAACGACCTTACAATTTTCAACCTTGAATGGGATT
TTAAAGTGTTggagaaagaaatattttgagaagGTCCAAAGATTCGTGTT
CTCAATGGTGTTTTCATATTTGATTTAGACTTAGGTTAGgttatattttt
aaaatgttatcATTTTGACTGGATTGTTGCTAATATTGATCTTTTGTTAT
TGCAGGTAATTAGGGGAAAAATCTGTTAATTGTTATTTTCTTGCTTATTT
TATATCTTCCCGTCTGCGCACTTTTTTGTAAggcaaaaaatggcattttt
tc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016920TCONS_00016920Clytia hemisphaericatranscript
TCONS_00016921TCONS_00016921Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00016921-proteinTCONS_00016921-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000254supercontigsc0000254:291567..301868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.44	16.59	7.59	6.11	136.22	107.14	90.12	85.06	47.21	55.3	38.83	39.21	19.29	26.34	9.78	10.26	15.07	11.78	14.36	13.54	14.54	13.32	16.08	19.24	20.63	15.13	20.77	16.28	7.98	9.9