XLOC_007938 (gene) - C. hemisphaerica

Overview
NameXLOC_007938
Unique NameXLOC_007938
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000183:28106..34905+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007938 ID=XLOC_007938|Name=XLOC_007938|organism=Clytia hemisphaerica|type=gene|length=6800bp|location=Sequence derived from alignment at sc0000183:28106..34905+ (Clytia hemisphaerica)
CCACTAACGATAATGTTACTTCTTAAAAAGCACCGACAGTTTGGTGATGG TGAtctatcattttttttattttaacctGGTAGTGTAAATTTGAAATGAG AGGAAATTATTGTTGACAATTTCagcaatttttgaattaagtTCATCACA CTTCAAAGAAAGGACGAGATATCCTGGCTATGAATTGGTTAACTATATGT TTAGTTGCTGTGACGTACGTCATAGTGGCTAAATCGCAAGGTAGGACTCT TAGACGATTCTTTCGTCCGTTGGATGGAGAGTATTCGCGGAGAAATATAC ATATGTACGGAGCTTATAGCCGTAATGGGCGGCAGTAGAAGCTTGAAACA TAGTAAAAACATCCATCACTTCTTACTCCGACCCGGTCTTCCCTTGCTTT CCGAATTCTTTCCACTTCCTTGACTTAATGGTTTTTATTTCTAAGGCCCT CAATATGTGATTAAGAGACTGTTTAGTAATCAACGAAAAGACGATTTCAT CTATATTCCCCCTCTATTGACAATTGGAGCAAAAGAGGTCACGCAACACT CTCAAATACAATCAAAAGCGACAAGATTTCATTTCTAGATTGAATTTTAA TAGATGATTAAGGAGTCTTTCttaaacatttttggaaacGTTTTCCGAAT TTATCGTCAGctttgaaaattgacttttaatGTAActgattttagtgaaa aagtctCAATTTCAAAAGGCAACTATTTTGACACTAGATCTTTCGTTCCA CCTACAGTATGCATTGACTCGAGCAGAAGATGTGTATATTGGTCACGTTA CTGTAGAACAAGCACATATGTTGCACTACAATGTAGAAGGACGTGTGGAC GGTGCCTTATCCCTCGCCCAAGACCAGTCGGTAAAGTACCTTGGACGCAT TGGACGAGAACAATCGAAATAGTTGTTTGTACAGGCCCAACTtaccctaa aaatcaaaaattcaaaatcaatcaCTTTCCTCAATCACTTCTTTGTTCGA ATTTCTATCCGGTTGAAATTTTACCCTTGTTTCTATTCTTTTCTCACCTT ACCTTATTTGAATTTGAGTAAATTCATACGTAAAATAACAAAACTCTTTC AGGGAAAGAAGTCAATTTGAGCAGATTTGAGATATATTTTGGCAAAAAGA GGCAAATCTTTTACAGTCGAAATTTCTCCTTATCTACTTAACATGGACCC CCGTCCGATAAAACATCTGTCACGTGCAGAATTAAACAgctataagaaca tttttgagtCGTTTTAGGGATATTTTTGGGTTTATTTCCTTTATATCCGC CAGTTCCATCTAGAAGATGTTTCGATATTGACCGTCGTTGTGTGTACTGG AGGAATCACGGCTATTGTCGAAGATATTATTATCAAAATCGATGTCAAAA AACTTGTGGTGTATGTAGAGGTAagaattttttcattgcaaaaAGAATGT TTCAATGATTGTGATTAGAATATAGTTCTGGGATAATGCAAAGTACAAGA TCTCAATGCAATAGATACATGTGTTATCAAGCTAATGCCTTTACGTTTAA CTGGCCTAACTTAAGAGAGTTTTCAGGCTTATACAACAAGATTCAACCAT CATTTAGTTGACAGCATCAGAAGAGAGGAAAGAAGAATAAAGATAGCTAA ATAGACAAAGTTATAACATCGGGTACAGACCCACAAATAATATAAATCTG TACTAAGCCGTCAGAAGATGACAACAATATAAACATAAAGATATGCAATA AATTATGGGTAGCGACTTGCTTCATATCGACTTAAGATCGTATTGACTAA AATTCATTAAACTACTTTTGTCTCTATCATTAGCACTTCCAACGACAAGA GTATGCGTGGACAGAGACTCGAGATGTCCTTTTTGGGCAAGACGCTATCA ATGTTTCCTCAATTCAAGATATATGAATCGGAATTGTAAAAAATCTTGTG GAAAATGTCCTAAACGTAACGACTACAACATACtatgttggacggtgaaa aagaatgcggctattatattttgatttttcccgacatgtttcggactcgg tccgttctcaagggaatgatatttctatataaaaaaaagtgtttctatac aaaattatttgacgtcaaattggaCAAATACGTCATTTTAGGCGATTTCG GCTTGAAAATGGGTTGGTGTAAATGGGGCCATCTGATAAGTTGAATTCGG TCTAAACGACTACAACATactacatacatacatacataactTCATCCCTC TCAACATACTATTACCATTTAAACTATGAATCAGTGCCCTTTTTTGAGTA TTCGTCTGCAATCGAGGAAAAAGTGAAAACGTTGGGtgtaaattttgaat atttagtgTACAATCTTTTCGCCATTTTCTTAAGTCATTCGATCTGGGTA AAATTATAGAGATCAGCACCTTTTCTATTTCATAGCAAAACCAAAACCAA AGCCAAGGCCAAGAACAACAAAGACAACGACAACCACAACAACCACAACC ACATCTACGACCACTTCAAGTAGAAAAAATCCACTTATCCCAAAGCGTAC CTCGAGGGAACCTTGCCCTTGTTGTAGATGCTCAAAATAATAGTAATAGA ACAGAACGATAACAGTAATAGAACTAGCCGTCATCCGGGTCGCACCCGTC GATTAGAGTGTGCCTTACGCATGACAAAGCCCTTAGGATGGTGGGTAGGG TGTTTTAGGGATTTATTCAAACTCTAAGAACGAAAAATTACCACTTAAAA TCGATCGAAATTCAACAAGTGAAATAAGAAAACAAAGAGAAACAAACGAG TACAACAAAAATTTTAGGAATGAATTTCACAAAGACGAccatcaaaatca acaaaatcaactTTGTTTCGCTCATTTTCAGCTGATCCACCACCACCTGT TCCAGAAGTTACAAAACCTCCAACTCCAAGAGTTACAAGTAAGTCGATAT CTGAATCTTAGAAATCCCTAAAAATATTAGTCAGCGAATCAATCTTAAAC ataacaaatctcttttgacttTAGCTGATGGAATCCCGCTACCTGTTCCA GAAGTTACAAAACCTCCAACTCCAAAAGTTACAAGTAAGTTAATATCTGA ATCTTGGAAGTAACCCAAAATATTAATCAGAGGATCAGTCTTAAACataa caaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAG TGACAAAACCTCCAACCTCAAAAGTTACAAGTACCATAAGTCAATATCTG AATCTTGGAAATCCTCCAAAATATAAAAGAGAGGATCAATCTTAAACata acaaatctcttttgacttTAGCTGATGGAATCCCGCCACCTGTTCCAGAA GTTACAAAACCTCCAACTCCAAAAGTTAAAAGTAAGTCAATATCTGAATC TTAGAAATCCCTCAAAATATAAAACAGAGGATCAATCTTAAACataacaa atctcttttgacttTAGCTGATGGAATCCCACCACCTGTTCCAGAAGTGA CAAAACCTCCAACTCCAAAAGTTACAAGTAAGTTAATATCTGAATCTTAA AAGTAACCCAAAATATTAATCAGAGGATCAATCTTAAACATAACAAATCT CTTTTAACTTTAGCTGATGGAATCCCGCCACCTGTTCCAGAAGTTACAAA ACCTccaactcaaaaagttaaaagtaagTCAATATCTGAATCTTAGAAGT AACCCAAAATATTAATCAGAGAATAAATTTTAAACCAAAAGAATTCTTTT GACTTTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTC CAACTCCAAAAGTTAAAAGTAAGTTAATATCTGAATCTTAGAAGTAACCC AAAATATTAAACAGAGGATCAGTCTTAAACataacaaatctcttttgact tTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAAC TTCAAAAGTTACAAGTGAGTCAATATCTGAATCTTAGAAATccataaaaa tattaaacagAGGATCAGTCTTAAACataacaaatctcttttgacttTAG CTGATGGAATCCCGCCGCCTGTTTCAGAAGTTACAAAACctccaatttca aaatttacaagTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATT AAACAGAGGATCAGTCTTAAACataacaaatctcttttgacttTAGCTGA TGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAG TTACAAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAAC AGAGGATCAGTCTTAAACataacaaatctcttttgacttTAGCTGATGGA ATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTAC AAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAG GATCAGTCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCC CGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGT GAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATC AGTCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCGCC GCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGT CAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTC TTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCCT GTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAAT ATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAA ACataacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTC CAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCT GAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAAACat aacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGA AGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCTGAAT CTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAAACataaca aatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTT ACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCTGAATCTTA GAAATCCCTAAAAATATTAAACAGAGGATCAGTCTTAAACataacaaatc tcttttgacttTAGCTGATGGAACCCCGCCGCCTGTTCCAGAGGTGACAA AACCTCCGACTCCGAAAGTTACAAGTAAGTTAAAAGGGACATAACAATGA TCTCAGCGTATCTGTTTTCTTAATATTCACCATAACCTGTGAAGAATTGA CCTGATATTACAACACTATTACTATTTCACTTTCAGCTGAAGAATTACCC ATCATTCCACCAATACCGCCAATACCTCCAATACCACCAATCCCACCAAT CCCAGCGAATCCTATGAAATGCCGTAAACAGGTCagaaaaacacttttgt ttgttttacttACTTAGAGAGCGTTCTAGTTCACAATCGTTCTAAACATT CTTTCGACAGCAACGGTATTAGTAagtttcaattaaaaaaaagttcgttC CTAAAGTCTGTCACAAAGCTTTCTGAAAACTTTACATGGTCTATTTACGA GCTATATTAAAAAGCCCACATACCTTTATGTTGGAAGTTCTGAAGCAAGG GAGCTTTAGAGATCTCAAATCAGACCCGCTGAAATTTTTCATAGCTACCC CAGCGGAATTCTAAACTTCCCCGGGGAACTGAGACAGTGAGACAAGGGTT GTCTTTATACTTTTGAAGGACAAAACAATTGTCAGTGGTGTGTCTTTACC TTCTTCCTTTTTATAGCCCAACGGCAAGCTCGTTTGTAAAGGAACATCAC GCGTAATTTACAGAGGTGAAAACGATGAAGCGAAAAAGAATTGAACAACA AAATACCcaaagaaagtattttaaagATAAACCCATAATTCACAAATTAT AATTATATACAAATATCCCTTAGCAGAAAATTTGACTAGCACTTcttgat tttcaaagaaatatatttaagatttaaaaaaatcaagtgcACTGATCTTT TAGGAAAATGAATCGCAGCATCGCAGGGTATGCAGGGTATTAGAAATTTG CTATTAGAAATTATTCTGTGACCCTCTTATCGATTCTCCGCCGAAACAAT TATTCtctgtatttattttttgtcatttaaaGAAGGCATCAATTTCACTA ATCCTTGGGAATATTTCAGAGCCATAGTAAAATCTGTCATATTTTACGNA ATTTTTCATAGCTACCCCAGCGGAATTCTAAACTTCCCCGGGGAACTGAG ACAGTGAGACAAGGGTTGTCTTTATACTTTTGAAGGACAAAGCAATTGTC AGTGGTGTGTCTTTACCTTCTTCCTTTTTATAGCCCAACGGCAAGCTCGT TTGTAAAGGAACATCACGCGTAATTTACAGAGGTGAAAACGATGAAGCGA AAAAGAATTGAACAACAAAATACCcaaagaaagtattttaaagATAAACC CATAATTCACAAATTATAATTATATACAAATATCCCTTAGCAGAAAATTT GACTAGCACTTcttgattttcaaagaaatatatttaagatttaaaaaaat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00014174TCONS_00014174Clytia hemisphaericatranscript
TCONS_00014175TCONS_00014175Clytia hemisphaericatranscript
TCONS_00014176TCONS_00014176Clytia hemisphaericatranscript
TCONS_00014177TCONS_00014177Clytia hemisphaericatranscript
TCONS_00014178TCONS_00014178Clytia hemisphaericatranscript
TCONS_00014179TCONS_00014179Clytia hemisphaericatranscript
TCONS_00014180TCONS_00014180Clytia hemisphaericatranscript
TCONS_00014181TCONS_00014181Clytia hemisphaericatranscript
TCONS_00014182TCONS_00014182Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00014174-proteinTCONS_00014174-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:28106..34905 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.04 0.04 0 0 0.04 0 0 0.06 0 0.11 0.12 0.05 0 0 0 3.35 2.28 0 0.08 23.29 25.34 11.83 9.64 1.81 0.25 0.59 0.76 0.58 0.46