XLOC_006465 (gene) - C. hemisphaerica

Overview
NameXLOC_006465
Unique NameXLOC_006465
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000130:222790..231329+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006465 ID=XLOC_006465|Name=XLOC_006465|organism=Clytia hemisphaerica|type=gene|length=8540bp|location=Sequence derived from alignment at sc0000130:222790..231329+ (Clytia hemisphaerica)
AATAGAGAGAGATAACAGTTAACAATAAAATCCTTCATCACAAAAgccaa caaaaagaaagagtAATTGTAAGGTTGTCATGGCGACTGTTTATGCAAAA AGATGCTATTACAAGCTATTATTACTCTACCCTTTAAAAAGAAAAGCATG TGATTTTAAAGTCAAGTTCTTAGTGTCTGAAATTTGAATTGCAGCACAGG AAATAATGAGACAATCACTCTGAAAGCTGTTTTGTCCATTATGATAGATA GACCTTTTTTAGAATGTCAACTTAAATCTCAAGATAATTTTGTATTATGT TATTGTTTGAagtcttgatttttttaagtaAGCACACTTTCTCTTAAATT ACTACATTGTGTTTCTTTTCCTCAAAATTTCCagctaaaaataaataaaa caaacaaaaagaaactCAAAATGATGGCAGACCTTGATTTATTAGGCAAT GTAAGTTGTTAAACCATAATTTTTATCATAGCTTCTTTCTTAGGTAGCAA ACTTCTCccctttggaaaaaaattcaactctGCCTAGAGGGAAACTCCCT AATTGTAAAATACCTAAGAGGATGTCATCTtaggtaccttaagggaacta atttcgTGTTTTTGGGTCTCTACCGTGAAAAAGATTGGTTCCGCAAAATG TAGTTTTAGCTAAAAACCACAAAAACCCctaaggaaaatgaaagaatttc agCAAAAAGTTGGTGTTAGCTGCGAATATTAGTTCCGTGAATATTAGTTC CggcaaaaatttgttcccttaaggtaatctgaaacttgaaaaaaacttaA ACCTTCTCCCAGAAGGGGTGATTTAAAATTTATGTTATTTGAATGAAGAG TAGCTATTTGAACAACATTGCAATCTACACAATGCTGTTTCTACAAATGC CTTCTATGAAACATTtaaagtgaaaatttcagatgaaaatcatgaattta ttttttcagtcGAAAAGTCCACTGAAGTCTCCAGGAAAGACTTtgccaaa aattccaaaaaaggtGAAAGAAGAACCACAAAGTCCAGTAAGTGGTTTAA AAACTTGCTCTTTTGTCATCAAATATGTTTTATATTTAAGTTTCTATTCT AAATGACCCTGGGAAATCAAATAAtccatttttttacaatttattctatt tttttcaacatttaaaaaCAAAGCTTTGACAGCTAATTATTCGATAAAGA TGAAATTTACACTTTGAAActccaattttgtttttttgtacgCATTTAAT ATTGAAGCTTCCTCTATATTATTTGATATATATTATAAAAGAGAAGCCAC CTGAATGTTTAATGTTGTACACAATGTTTTGAAACCAGGTTAAATCTCCA ACCAAATCTCCTACAACAAATGGACATTCTAATGGATCAGCAAAGAAAGa agttaaaaaagaagaaatgtcTGATGACGAAGATATGCCTCTTCAAAGGT ACAATTGATctcaatttcatttttgaatgTAAACTGAGtttaacaaatta aaaacaaaattgtctATTAGTACTCTCACCCCCCccctaattaatttttt ggaaaatgtttttgaaagttccctcttttattccaacccccccccccctt aattACCTGATAGtataaatatttcaaagctTTAATGATGGGTTAAGGGT TCACAGGGGttctttttctcctttattGTCGCTTACATAAAGTTATTTGA ATTTAGTGTGAAGAAAGAATCTcgaaaaagaaaagtgaaagaagaagatg aagattttgaagactcaaaaaaaaagaagaaaaagaaggataaaaagaaa gtcaaaaaagaAGCTAAAGAAGTCAAAAAAGAAAGTCCCAAGAAACGTGT GGTAAGTTCATTTAATTAAGGGGCTTCAATGGGGCTGTTCATTTAAATAC CTGGGAATGTCAAGAACTTCTCAATTATTGATTTATAATTTGGTCTTTAT TCAGAAAAAGGAAGAAGTCAAAGAAGAAGTTTGGCGTTGGTGGGAAGAAA CTCCTCATCCTGAAGGAATTAAATGGAAAACACTTGAACACAATGTAAGT CTTCGTGTTTTGTTATGCATATCCTCTTTCTAAGTTATACTGATAAATGG TGGCCTTCTGTGTACCCTGACATAAAGGGAGGTAAAAATTGTCATCAGTT TGTTTTTTATGTGCTCAAAATTCAGCTATTCCAGAATTATAAACAGATTT TCTACACCTTGGGAATAAAATCTCTTAGGAATCAGACTTGGCAGATTATT TGGGAAAttaaaaccaatcaaaatttcacattagataatttgaaaaaaca tccaaaaaattcCCATATTGCTTTAAACTGCTTTGACATCAAAGAAGCAT TTTGAATTACAACAGTATTGCAGAGAGAcaaaaaattatcttccaatATT GTCCcgcaaaataaattttcaacagcaaaacatCACTGAGTTTGTTTCTA TTATAGGGACCATACTTTCCACCTGCATATGAAAGGCTACCAAAGAATGT TAAATTTTACTATGATGGTATGTACTTTAAAATGCAGTTTGTCTTCCCAG TATTCAGATTCCTGTCTTAGCCAAGTCCTCTTAATGGCATCTTAAATTAA AATGCCACTTTGAAAACTTACTAGATTAATGGTCAGAGctaattttcttg gaaaaattgccatttcataatttttaaaatttattattttcctTTAGGAG AGTTAATGGAACTCAGTGAAGGAGCTGAAGAAGTTGCAACTTTTTATTCC AAAATGTTGGAGCATGACTacacaaaaaaagatattttcaacAACAACTT CTTTGAAGATTGGCGTAAAGAAATGACAGACCAAGAACGCAAAAAGATCA AGAAATTAGAAAAATGCAATTTCCAAGAAATGTGTGATTACTTTAAAGAG GTAAGTAAACAATTTTATTAATGAAGGACTTGAGACTACTAAAATTTATG TTCCTTGTAAACTTTTATTATCATCTGTAATTAGCTTGGCTTTAtctaaa tttatttattttctcaacAGCAATCTGAAATCAGAAAGAACAAAACAAAG GAAGAAAAGTTAGCCTTGAAAGAAGAAAATGCAGCCATTGCTGAACAATA TGGAATGTGCATTATGGACGGGCATAAACAAAAAGTTGGTAACTTCCGCA TTGAACCCCCAGGTCTTTTCCGTGGACGTGGTGATCATCCAAAACAAGGG AAGTTGAAGAAAAGGGTCAAAGCAAAAGAAGTTTCCATCAATATCGGAAA GTAAGTATGATTTCCTGTTTTGGCTATGTTATACTATGATTGTTTTCACT GAACTAAACCCAACCCAACCTGGTTATATCTTATACTTAAATGATTTTTT GGTACACATTAGGACTTTAAATCCTGCATAAGTAAAGATATTGATAATAG AATTAATAAATGAAATGCACTTTGAAAGGAATGTAAGGTTGTAAATAAAA TAGGTATCTGCTATGTACGTCAGATAACTGGAGAAAAGTCTTATCCCTAT GGCAACCATCTTCTTTTTTGTTCTTTATGGATTTATCATTGCCATTCTTC TTTGGATTTCAGAGCTGCCCCAGTACCTCAGCCACCAGAAGGTCAAAAAT GGAAAGCAGTTCAACATGATGCCTCTGTAAGTtcagatttttaatatttt tgagtgtgattatttacgtgggtcccgtgccctcatgggttcgtgccccc gtgggtccaaaaaaaaaaaccccgtgggtccaaaaaagaaatcctgtggg tccaaaaaaaaccccgaaaaaaaatccaacgTTGGTTTGGTTCCGGAAAA ATAAATGTATCGAAACATTCTATTGTTTGCTTGTGTGTTTTAAACTGCGG GTTGGTTTTAGATATTGTCTGCGGGAGACTGAGTGTTCGAAAAATCTTAC CTCTCACGATTTTCCATGTTTGGCAATCCACACAGTAAttgcaaaaatat caaaaaagtaaaaccaACACACTAAAGTGCAACAAGACGAGCTGatcgaa ttcgaaaaaaaaaaaacgttcgaaattcgaatctttGTCTGGTTTCTCCG CGCCCCTTGATAACTgaaatgaacaaaacaaagagttTCCACTTTTCATT GAAACCGGGCTCTATAAAGTCCTGTGCACATTTGCATtaggtttttttat gaaatgctGTAGTGTAAgatatttttacctttttgctgACTACTGTGAGT GTGAcaagcttttttttttacagtccgaaaaattttttttcttcaaaaaa tcaggtttAAATATTCATGGTTATTTGCACTCTTCAagcaatttcttcaa aagttcaaTATTCTCCTTCGATCCAGAgaacgaatttttcagttattccg gttattcgaagtaaattcttaCCCCCCTCTggaataaccgggagtctact atagactcttaaaaaagaaaaagctcaaaaataattgaatgtGTGGGCTT GTCATAGTCTATTTTTACATAAAGTCAATTATTCAatcaataatattttc ttaCCTTAATGAAATTTACATCTCTTGTAATAAAAGATATACGTTACGAT TGTGCACACTTTTGTAGGAAAACAGCCTCTCTTGAAAAGTCTCACAACTC TAAAGTACTTAAAGAACTCATAAGGTTTTTGTTCGGCGCGGTTCTATACA CATAGAGtcttttttggacccacgggttttttttcgaACCCAtgggtttt tttttggacccacgggtttgttttttttttacccacaggttttttttttg gacccacggggggCACGGGACCcccgagggcacgggacccacgtaaataa tcacactcaatatttttttataatcttatCTTATTTTATCTTATAATTAT CTGTACATGGTGTTCAttaaatttgatatgaaaaatattcttatagatac attaaatatatttttcattcttttcaaaaagaaaaatcagggtGTCTAAG TGACCTTGAATTCCttgaaaccttgaaaaaagcATGATTTTCACagtatg ttatctttttttgggtTAGGTCCTCACTGAAGTTTTGGTTgatgctaaag ctctaaaaaatTTCTTGCTCCCATCGCTCGCAATCATTTTTTATGGACCA aatgctacaatcatggtcgaaatagaatgagaattccggttattttaacg tttttcaagatttaaagttctggcgagaaagtcgattttgggctatctct ttaaNNaggaggggttggcagacttccaggctatattctgagccttatta gactatttttgaacttttggatcctgagatcctaaggtactaagtcttaa gtctagtgttaaaactcagagttaaaactctacccttcaaacctacttta gagcacttacaaatcgattgtggtttcaaaacttcccggtggatttccct tttttctcaaatattagattattacgaccatgattgtagtgaTAGTTTCT CACCCACCTCGTCAAGAATGGTGAtataaaaaaattgccaaaaaaaccTT GGAAACTTTGAAAATGGTGAAAGATATTTCGTAGACACCCTGAAAATGTT TGTAATTTGAAAGGGCATCATTTAATGTTTCTTCCATCATTTGCATTTTC ATTTATTGTGCTTCAGGTAACATGGTTGGCTTGCTGGACTGAAAATATCA CTGGAAGTAACAAATATGTAATGTTGAACGCTGCAACGCGTATCAAAGGT GAAAAAGATTGGCAAAAGTATGAAACTGCTCGAAAATTGAAGGGATGTGT CCACAAGATTCGTGAGAATTACAAAGCAGACTGGAAATCAAAGGAGATGA GGATACGACAAAGAGCCGTGGCGATGTACTTCATTGACAAACTTGCGTTG AGAGCGGGTCATGAGAAAGAAGAAGGAGAGAGTGCAGATACCGTTGGTTG TTGTTCTCTTAGAGTCGAACATATCAGTAAGGCTATGTTGTTTGAAATTC TTACCAACTTATAGTGAAcaatacatttaaaaaaaactttgatctcTCTG TTTTATCCAGTTTTTTTATGTCCAGTCTGTTTGAAAAACATGACTGTTAA CAAAATTGTCCTGATAATAGttatcttttttgtttcttacAGAACTTTAT TCGGAAAAAGATGGAGAAGAATACGTGGTTGAATTTGACTTTCTTGGAAA AGATTCCATAAGATATACTAATAGCGTTCCTGTTGAAAAGAGGGTAAAAT GATGATAAGTTTTCAATATATGTtattagcttttttctaatggcaaCCAT TCCCGCTTATTTATAAGCGGGAATAAGCGGGAATGGTTGCCATTGTAAAG TGCTGTTATAACAACAGCAGTTTACAAAACTATCTTATCAACTCCATGTA CTctaatggaaaatttttttgcagggattaaattttgcaaatgACCTCGT CGTAAATTTTTGCAGGGacttaaaattttgcggatgGCACTATAGGGAGA TTATATCAACAGGATTTGTTGGTTGTCAAAATATGCATTATAAGCGCTTc cttgatgccagtaaacattttaaaagtagttatttgacatttttcgagtt tttctcaaaatattttgcgGATAAGGTTTCCGAATTTCCATCGGGACTTG ATTTCGCAGATGACActcaaatccgcgaaatttaatcccctcgaaaattt atcccattaaagtaacatCAAAATGTACAAGCTTAAAATCTAATGTGATT AGAACCTTGGtttatctttgttttttcagGTCTACAAAAATCTGGAGCTT TTCAAGCAGAACAAACAACCAGGCGATGACTTATTCGACAGACTTAATGT AAGTGAAATCCTAaagatgttttatttttttacgtGTACATCTTACAGGG GAAATACAATTCCTATTTTATTACAGATTTGTCCAAAGACTTTTCGAATG CGAAGCACCATGTTCACACtggttcaaaataatttattcaGTATATGTCT TTGATTTTGCAATGATGAAAAATCAGGACATGTCTTTTCACTCTTTTACG acttaaaaatcttttctttccttttcagACTGGTAGTTTGAACAAATTTT TGGGTGAGCAGATGCCTGGTTTAACAGCAAAAGTTTTCAGGACATACAAC GCCAGTAACACACTACAACAACAACTGGATACACTTACTGAACCTGATGC GAATGTGACGGCCAAGTTCTTACAATACAACCGTGCCAATCGTGCTGTGG CTATCTTATGTAACCATCAACGTGCTCCCCCAAAAACTTTCGATAAACAA ATGGAAAATCTTATTACTAAGGTAAAGGAAACCATACAACGTAAGACACT ATGAAAGAAAATTCTGGTTCCATACATACAAGTAACTCATAAAACATTCT AAAACAATGCACtttggatatatttttcgacTGAAAAGGAACTCTAAAAC CTAATGACCCCATCGTCTTTCTTTGAGGTATTTCTGATATATTCTTTGCA TAACTTTATACAGCTGAAGGACAAGAAGAAACAAATGAAGACTGTGAAAA AGGAGATCAAAGAGCTAAAGAAAGAGTACCATAACCAAGGCAAAagcgaa aaagtcaaaaatatgatcgagaaaaagaagaaacaagcCGAACGACTTGA AGAACAGTATTTTAAACTTGAAGTGAACATGACCGATAAGGTATGATCTA AGTTTAACATTCATTATCATGACCTTTCAACGTGGTTGGTTCCTTCTTTT CCATCATCAAGGTTTCTATCTTTCCAATTTGATTTAATACCAACGTAATT CCATCTTTGTCCAATGCAAAATAATCTGAGTCATATTAAAAGATTTTAGC AAGGTTAAACTAAATAAAACTCTTCGCCCATTTCAGGAGGAAAACAAAGA GATTGCTCTCGGAACATCTAAACTGAATTATCTCGATCCTCGAATTTCTA TCGCATGGTGTAAGAAAAATGACGTACCCATCGAAAAGATTTACAATAAA ACTCAACGCGAGAAGTTTCAATGGGCCATCGACATGACTGACGAAACTTT TGTATTTTAGATGAACACCCTTCTCCTACAAACTTTCCTCTAACCCTAAC ACGACTTAactttttagcattttaaaagaatttatttcaattttttcaaa aatttcttgtcTTTTTCTATGGATTATTATATTGTCCTCGTTTAATGAGC TGTATATTGTGATTTTATCGTGAGCAGATTCGATTTGTCATTTATTGTAA TTCCAAACATGCGAGAACTTCGTTTACGCGATCGATTTGCAATGTGAACC TTTCTGTCACTTCTTCTTGACAATCTTGAAATGCTTTCCCGTCCACATTT TGCGAAAAAACAGTGTGACTTTTCTGTTCTGGTTCGAATAACCTCGTTGG ACAAAAGCTTCGACGATTAGCTTTATTTCAAtgacaattttttaaaacat tttttaaatacctTATGTATAAATTTTACACTCCGTATCCATTGTCCTGT TTTGcaatgtttgttttgaattttttgaggctcaatttatgaaaatgaag aaatgaatgagaaaaatgaatgaaaagttgaaattgtTCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011539TCONS_00011539Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011539-proteinTCONS_00011539-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:222790..231329 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
TOP1DNA topoisomerase 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
99.48 97.99 51.65 41.98 238.37 184.89 139.85 146.21 67.76 69.48 57.65 53.64 54.54 50.49 55.52 57.7 66.05 66.91 34.74 38.31 68.36 69.25 115.05 103.71 90.05 91.35 51.11 46.15 79.55 91.95