XLOC_006313 (gene) - C. hemisphaerica

Overview
NameXLOC_006313
Unique NameXLOC_006313
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000124:45785..53556+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006313 ID=XLOC_006313|Name=XLOC_006313|organism=Clytia hemisphaerica|type=gene|length=7772bp|location=Sequence derived from alignment at sc0000124:45785..53556+ (Clytia hemisphaerica)
TTCAGCTTTACAATATTTAAATCACAAACCCAAACATATCTTGCtatgaa aaaatctttacatGGCAAATCTGGAGAAGAAAATTCACAAGGagagattt caaattttgtagagttttcgatttttttattctGAATTTGTTTTCAACAC ACGCTATGGGAACTGACGTTGGAGCTTGGATATCATGCGCTAAAGCCGCA GAAATTGGATGGGTACCACTTGCAAATGGATCACCGCATAATATACCTAA CATAAAGAAACTGAAAGAACCGATTCTCAAAGTAACAATTAACGTGTCTG GAAGACGGTACCAAACATATCATCACACGTTAGATCGGTATAAGGATACG CTCCTAGGAAGTGCGGAACGTGATTTCTTTTACGATAAAACCTTACAAGA GTATTACTTTGATCGGGATCCCGATTTATTCCGATATATATTAAACTATT ACCGGACTGGAAAATTACATTTCCCACGAAATGAATGTGCAGGTAGTTTT GAACAGGAATTAGAATTTTTCGGAATTAAATCGGGTTTTGTAGCACATTG TTGTTGGGATGATTTTGATGACCGGAAAAAAGAGCTAGAGGAAAGATTAG CAGATATGGATTTAGTTTCCGATACTGAATCCGAAATTGACGAAGAAGAA GCCGAATCGGAAAAACAGAAAATGAACATCCGTGAAAAACTATGGATGTG GTTTGAAAACCCCCACAcaactcttatttctaaaatcTTTTATTATGTGA CTGGATTTTTCATCGCGGTCAGTGTTTTATCAACGATCGTTGAAACTATC GAATGTGATGGTGAAACATGTGGCAAACGCTattccaaaatctttttctc aattGAGGCATCATGTGTTATAGTCTTCACTATAGAATACCTTCTACGTT TTTTTGCGGCGCCTGATAGAAGTAAATACGCACGTAGCGTCCTCTCAATA ATTGATATAGTTGCCATTCTACCATTTTACATTTCATTATTCATGGCAAA CCATTCGATCAGCGGAGCTTTCGTGACATTGCGTGTTTTCCGTGTTTTCC GAATCTTCAAGTTCTCACGTCACTCTAAAGGACTACGAATCTTGGGGATC ACGCTTAAATCATGCGCATCAGAGCTTggatttctattgttttcgttGTC CATGGCGATCATCATATTTGCAACGATTGTTTACTACGTGGAGAAAGACg agaaagaaacaaaatttaacagTATTCCAGCTGCATTTTGGTATACTATT GTCACAATGACAACTTTAGGGTAAGAAATCATTTTATTCATCAAAACGCA CATCCATTGCAAGGGTTGCTTCTTACAGAATCGACAACATTAAAAATATG AATCCTGTAAATCATAGGAAGAACAGGGTCTTATTTGCTCTCTCTTAGCT CTGCGCTAAATTTTAAGactggagtctctttaactcgctAAAACCTCTAT AAGTtttgctcgaaaaagttttGGTCCATTGGTCCTTTCAGAtaacaatg tcttataaaccttaccACCTTAACTCTAGATCTGCTTAACTTGAACAGAT ATGTGTGCGTGTTATGGAGAATCCACTGTACTAACAAATTCATTCACTAT AGGCAAAATgacctcttttttcttttaggtaCGGAGATATGGTCCCTAGC ACAATTCCAGGAAAACTTGTGGGAAGTGTTTGCTCGTTAAGTGGTGTGTT GGTTATCGCTCTTCCTGTACCCGTTATCGTGTCCAATTTCAGTCGCATTT ATCTGCAAAGTCAAAAAGCGGACAAACGGAGACTGCACAAGGTatagaac acccctgtctcacagtcacAGCCACGGTGGAACTTTctcccacagtgggg atgaaaattctaattgggatagaaattccatTGTCCCTAGGTCAGTGGGG GATGGtttacagtagcgtagacagggggCGCAAagtttgtgtaggagagc agacttttatgacacagtaattatctattcatattatacaaagataatta ctgtgtcataaaagtctactctcctacacaaattttgcgcccttcttgtc tacgctactgcgactgtagttttgaatttatttagcATTACAGTGGCATC TCTTTGACTCAAACCTTTTTAACTCGAATGGCTCTTTAACTCGGACAAGT CTTCTGCTCCCTTCTATTAACAATGCCTTagataaaccttactccatatc acgaaatttccataattcgaaagatttatgttccccgtgcgtgttcgagt tatggagcttttgtaaatttgaaaatgttgacccattttgctttttttaa agcCGGCGGGTAACCACTGGAAAAAATAAGTTCGTCGTGAATTTCTCTGT CGCAAAAAAACTATCGTTTTATTTGCGTGATGGCGAATATAAATAagcga tgaaaaatgaaaaagtataaTGGGCTAATATCCGGCGTCAATCAAACTAA AACGTGTgcgaaatattcttacggtgcCAAAAGGAGGGAGTTGTTCTTTC GTTGGTTTAAACATGCTTATTTGGTAGGAAATACGTTGAATGATGTCTTT TAATATGTGAACGTGTGGCTCCTGTCTTTTCCATTGAATCTTATCTTATG TCCTTCTTATTATAAGAAAATGCGTACAAAGGAAAAAGAACCGGATGAAG AATCTTGTGGAATACAAGAAGGTAACCCCATGGATAATGCAAAGTCTTAT TCGCAATCGGTATGAACTAttgatttgttttgactttCAACTTGGAGTGT TGGGGGAGTGTCTGTTAAGAATGCTTAATTCATCTTGCAAAAACAATGCT TCGTCAAAATTATATACACCATTCGTTTCAATTCTtgcacctccttctca cagaccctgtaggatttttcagccagttgggataaaaataacagactgaa aGTTAGTGGGGGATTGATGTTCCTATATTATTCATGGCTAGGGATTTCAA TCACTTTGTGTCCAAGTCCgaaaattcaatggggatgggAGAAAAAGCat catattttgcagtgaggattggtttttttgattattttcagtggagacaa aaatgaAAGGAtaaaggataattttccaccggggacggtGAAAATAAGga gcaaaaaataaaagaactcGAAAAATAAATCCCATATTGCACTCTGAACT ATGCGATAACTAATACTTATTTTCAgtagggacaaaaattgaaggataat tttccaccggggacgatattttggatgatttttccagtgggaagggttcc cagtgggtctgtgagaaggggtgtattcTTATTCAGCATTTATAATGTGG ATACTTTGTTTTGATGAATCGTTTTaaacttgtttttaaataagagtgat ctGAAGCTTTTTGATAatgaattgacacagatgtggagcaagatgggaaa gaaaaacattttttgtttatatcagtatgatataacaataggcagacact gtcctgatatgaaacggaaacacttatgtagaaataaaacttttaacacT GCGATGCTTTAGCAATCTCAGCATTTTCTCATGAAGATTCAGTTACAATT CACGACCACAATATGAATATCGTTCGCGTggctttaaaataaaattgaga atctccccccccccaaaagaaaagtttttccaGATTATGGTGTTGCAACA ACggaaaaaatatctttcaactcTTCTAACATTTTTTAACGTTGGCAGAA CATTTTTCTAGTTCTTATATAGCACTTACAGTTCTAAAATTTCCTCGAAG CATAAATGAAAAACATCATTTAAGATTTCCTGTTGTTCAAAATTGACATT TAGAGAGGCTGTTATAAGAgaccgcaaagccttaaactaTCCTTATCACT TTGGGCATCGTATATATTCTTATatgtttgttcttattaaaaaaaaattc ttttttagaatgGTGGATTAGAGATACGTAAAATAAGTACGTCATCGGCA ACCAAACTTAttcgcaaattttcaatcaactCATCTCATAATTCGGTAAG ACGGTTAATTAAAACTTTACAGTAGAGCCTCCAATAGCGCACCACGCTca atctaaaaatatattctatttttgacataatcattactctcgatgtgttt gtacgagctCCAATCCAATCAACCTTTccgttaatctcttttgcacgtta attgtatcatttgacaaaatataTATAAGAACTTGCACGTAATTGAGCCa cattgaattgtgggattgcaactcgtacaaatgtcaaaaaaagtgaaaag taataattatgacgtatgcgttgcggagcgctattagGGGACACTCTAAA AAGCGGACACCTTTCGCTAGTGCTAGTGGAGAAATATTTTCctggccgtt tcctagtcaaaccCTAAATTGTCTCCCCGATAGTGTCCACTAATTAGAGG TTCGACGTCTACAAGAGCCGTCGTTTTCGGTAAGATTTCACTTCCGGAAC TAAGATTTCACCGACTTTTCCGAGAATACTTCCCGCTGTTTTTTAACGGG ATACTATTAGGACTTCTGGTCTTTTTTCGCTAGAGAGTGGCATTCGAATC TTAGTTCTGGAAGTGAAATTTTATGTTACTCTATTGACGCTATTTTTCGT CACTGACATGATAAGAGTCGGCGTAAAAGAAGCTAAACTTAGTGCCGAGC TTAGTGCTAGGACTGATAAGGTCATCCGTTTATAGCACTGGTCTCAAACT ACATGGCTGGATCGGGCTACCTGTGTATATGAAGCGTGTCCAGGTTGAAG AGCTAACTAGTCCGCCATATTGTTTCCGATTATGGTCGACAACAGCACGA TTCGaatgatttgaaatttgaacttttGAGAATCTGTAATATATAAAACA ACATGGCGGATTAGTTGACTTCAAAACTGGACATACTTTCACGGGAAATC TGTGAGCAGTTGGCCCAACTAGAATATGATAGCTATGGTTTATAgttttt ttgtcctttttgtgACTCATTGTTAAATTAGCGTCTTTTTGGGACATCCC GAATACATATGTACCTCTAGTCTagataactgaaaattattcaaacatat tttgatattatttaaTGCCGAGGAACAGCTAATGAAATACCCAAATaaat tctttcaacattttcaaccaATATCAAATTCCAGAGGATATAAGGTTTTT AACGGATATTAACGTTTCACAATCTTTACTGGCTTTAAACGAGATAAGAG CTCTAAAGTCTTGCTAACTCTGCTAAAGAACCTTTTCCAGGCTccatcaa aaagatttattatcGATCACATGAAATCAGTACACTTTCAATATTTCAAC CCCTAGTTTTTGTAATccttttttcaaacaaatttctTTGCCGTAATATT TTTATTCAGAAATTAGAAAACTGCgcctaattcgacgttctactattcga tacgatCCAttgtttcgataatattgaaatccACCCTCAACATTTTCTGT ACAAAGACcaaatatctacggctaatctcaaaattcattgctacgaagcg ataaacgtgagatacactcggGTACAGCGAgtaccgtcaacaagaaactc tcataaatgtTGCTCAAAGAGTAAAAATATGGGATATATTCTTCGAGTTC AGAACTCTGACTCTGAATGAGAAAAATATATCCTATATTGTATGAGTAAA AGTGTGATAAATATCATGAAACTTTTCTCTTCATTTCTGTCTCTTCTTCT TTGTTTggtttttccaatattttttcttttacttttatttggATGAAATC GAcatcaaacattcgaaaaaagaatcgaatagtcattaaaaagatcaaaa cattattttcatAAACCCTGTTGATAAGTTGTTGTGTATTGGAAGCGAAG AGAAAACCTTTCTAAtcataaaattatacaaaatatgatctctcgcttac cagaccccttttttgAATGCGGTtttgtatttgtacggtacaatatgaaa tgcagtatttatgtacgcgtttttagccaatcagattgtagaataagaga gcgtcaactgtatataattttatgttcttttttcctattttttagGAGAA AGAATTCTACAATAAAGTAGAAACCAATAATCTGGACTCGCCATCAGAAC CTCATTTTTATCCTAACAAAAAACGACCTGTTGAAGATAGCACTTCAATT TCTCCTTCACCATCACGCCAGACGGTCATCAAAAATATGGAGCGACCACG CTCTCAAAGCGAAAACTCAACTGTGAACAGTAGTAATCGGAACAGCGTTT ACGGGGCCCCTCATATGCTTAAAGATACTAAAAAACGAAACGCCAGCTTA GATGAAAATAACAGTTTGGGGACTAAGTACAAGGGTGATCATGTTCAGCA ACCGACCATTGTAATTGATTCGCCAACGGAGAGCTTTAAGCCTTTTGATT GGCGAGATAAAAATGGTCGAACCGGTGTTCCATTTCTTAACACATGTTCC GTTTCAACTGGTTACCATTCAGGCGGAAGTGAAATAAGCATGGAACAACA TAAGATTGACGCGGAAGACCAAGTGTGACCATagttttgttttggttaaa aacaaaagattgaGGTGTTACGTGGTCGGACAAACTATCCCATAAACAAA ACCGTCAAACAGAATTAAAGAGATTTTTGGGCACTATTGGTAATTTCTAC CTTAAGATTGATGAAGAAAAGCAAGTGTGTCCATAgatgtattttttgtt tgatcaaaaacaaaattttgttgtaTGAGTGGTCGGACGTCCCAAAATAA GAGATACTTAAACACATCTTTCAAACAGAAAAGAAAGATCGTTTTATAAC ATGAATATACCTTAACCTTTTGCAGAATAAGATTGTTTTTGGAAATCTAT TCTAttatagaggtttttcatcTTTCggtaagttacgtaatttccgccat tatggaaacaaATGTTCGAATCTGTAAAGTCGATCCCTtgcgcaaatcga acgtttgtttTCATAATGGTGGAAGTTACGCAACTTCACAAAAGATAAAA ACCTCTATAGTACTCAAAGGAAGAAAACATTATGTATCATATTGTATATA ACGcgagtattttttgaaaaagcttttaTTGCTGTCAACGAAAATTCcat gatatttttcaagttgaaaatATGGATTTACCAGACTTGAACTTAACTTA acttagatttttcaaaatttaaaacaaagctCTGAacaaatctttcttta atgcaatgaaaaaaatcaactatAATGTAGTATaattaattttcatattt tttacattttttggttcttaaaaaaacattttgaatcgTTATGAAAGCCA AACAGCCCCTCTGctacagacccgctgggaccccgcCCCACAGGAAGATT TGGCAAGAATTTCGTCCCTTTTTGGGCTTTAGGAAAGATACCCTAAGGCC CAAGCCACACTTTAAATTGGAAATGTTTTCATCCTCATTTGaaattggtt gaaaaaattgcactcaaaGACCATCTCCATTTGATGTTTTGCCAGCGAAT TTTTATCCCTATTGGAGTGTccatagaaattttcatcccttCTATGGGga gaagttccaccggggtgTAAAACGCTTTAAAGTATTCAAACAGTTGCGGA TAAGAAGGAGCTCAGAACTTTTTGACATCGAGTGTTTTAACCTGTTCTAT GCAAAGGATACGAAAAGGATGAACGCTCTCCATTAAAATTTTTAGACTAT CCTTCTTTATCTGCTTCTGCATATACGCTTTTAAGGAACAACAAGCTTAA CAGTCAGCTGTTTTAAATTCGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011262TCONS_00011262Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011262-proteinTCONS_00011262-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:45785..53556 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
KCND2potassium voltage-gated channel subfamily D member 2 precursor Homo Sapiens
KCND3PREDICTED: potassium voltage-gated channel subfamily D member 3 isoform X2 Homo Sapiens
KCND1PREDICTED: potassium voltage-gated channel subfamily D member 1 isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1 0.06 0.05 0.01 0.13 0.04 4.57 4.94 2.2 2.73 2.2 2.3 4.11 3.77 3.14 3.23 3.39 3.53 3.82 3.7 6.35 6.43 1.51 3.08 3.87 6.05 0.62 0.61 0.03 0.03