XLOC_006220 (gene) - C. hemisphaerica

Overview
NameXLOC_006220
Unique NameXLOC_006220
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000121:505957..513029+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006220 ID=XLOC_006220|Name=XLOC_006220|organism=Clytia hemisphaerica|type=gene|length=7073bp|location=Sequence derived from alignment at sc0000121:505957..513029+ (Clytia hemisphaerica)
CCTTCTCATCAACACTTTTATTTGCTTTCAGCTTTTAGCATAATAAGata gaaaagtaaaaagaaaagtgacatttcaaaatattagaAGATGACGTCAA TAAATGGGTAATgacatttttttacattttgattAATCTATAGCTCCATT CTATAGCATTTATTTGAAAATGGAAAGCCAGAACTCGACGTCAGATAAAT TTATTGCTTTGATTCATTTGAtgttttctttcttcatttttcagtgAGAT TGACCAATATGGTTTTGAACGAGCAGAAGATTTTGATTATGAATCTTATG AGAAATTCATGGCAGAATATTTAAGTGTTTTGGCGCGGAGATTGGCAAAG TGGGAGAAAATGTTGAATGGAACAAATGATGTCAGCAGGTCCACTAAAGG TATATAAGAGAAAACATTTCTTCATAATTTCGGACAATTTGTTCCAAACT TGTTACTCTTATCAGTTATCATTATTCTTCCCTCGGATTCCCAACTCAGT GGGGGAAAAAGGCTTctccaatctcaaaattttgcataatttaccaaaat ttcaatttcagaaTATGTGCCAATTGCTGTGTAAAATTCAATTTCTAGTA GGGGGAATTTCTTAAATCTTCATCCCTCAGAAACCctgttaaaatttgaa gatggGNtaattcaccaaaatttcaatttcagaaTATGTGCCAATTGCTG TGTAAAATTCAATttctagtagggggaaatttgttcgtttttttgaggtt gcttgatttttttagtcaaagcacttgttatacattttaaaCCTAAGGGG TAGGGgcatcaaaataacttgggtgccaatttttttcagacactttggtg tgattttcggacaaatataaCAGTCTCatgcaaaaatcatagggtgaaaa attaatgcaaattttagtttgagaaaaaggagacctgttgtatatttttg gaaagatctcaaaaaattaagattattgatatattgcgagtataagTGAT TTCTGTACAAACTCCCCCCTACTATTCCATCTAAGACGAATCTAAATGCT TTTTAACCATTGTCTTATAAAACTCTAATATCTTTCATttaatatttcag tgaaaagaTATATCCGTAAAGGCATACCAAGTGAACATAGATGCGAGGTA AGATTATGTTTCGTTCGACAATTTACGATAATTTTGGATTTGTGATTTTA TTGATGTGTTGAATCTAATTAaattaaaagtcaaaatcttGTTGATGATT TTCCATTTGATCTGAAACAAAGTGCATCTTCTTTCGTTTTAATTCAAACT TCTGGTATCCTTCTGACTTGCCCTTTTTTTTAGATCTGGATGGCGACGTC TAAAGCACAAGAAATGAAAGACCAAAGCCCTAATAAATACAACCAGCTAG TTTCTGAACCTACTGCCGaacaaaaagtcaaagattCAATAAAAATCGGT GGGTACTATTTAGTATTGATAGAATATGATAGAAGGCaacctaaagtctg tctcaatataatttacagcggagacaaaaaaggcttttacttttgataga attcgaattggACAGcgggttttgtgctcgttaaaaagataatccggagt ggaatattatcaaaaaaaagaaaagttttaaaaatggaaaaccgaagatg aaaaatgaagaagaagaaaatcaacttgttatagaataatgctatgatct taatttttatatcagaaattctttaatcttagaacataataaatgcaaaa aaattcaaaaaattttcattcagtcaaaaattACAGCTTAAAAACTGACT CACTTTAATAAGGGTTCGATGGTTTTTGAAGTCAATAAGTAATAAACTTT GGACTATATCTTTTGATagaataaatttctttgaaaactttttttacatt aaTGATGTtttaagatcaaagaatcactcgtgTCAAAATGATCATTATAT CATAATTGttaagttgattttcttcttcttcattttcaatcttcattttc ctattttcttgagttttttctttatgataatattccactcctgctTGGCT TTTCAACAAGCATAAAACCGctgtttaaaatttgaattccatcaaaagtt atagcgTTTTTTGTCTCCCGCTGAAAATGATATTGAGACAGAACTTAATA GCCATTTTTAGCTATTTTCATCTTAATGTTTAGGGCCTTGAGTACTGTAT AATTGGAGCTCATGAATTGTTATAATAGTCAAGTGTTTTGAAAGATTCCT TTCTTTTTCAGATATACGTAGGACGTACCCTGAAAATGTATTCTTTAAAG AAATACAAGATGGATTACTAGACCCTTTAGCCAATGTATTGACCGCATTT GCAAGCTATAATACAAAAGTTGGATATTGTCAGGTAAGTTATAAATATTG ATCATTGATCAATAACCACAATAATATAATCCGaaacaaagaaattaaaa acctaaaagtaaaaacacaaaattctcaatttttcaaaaatttgaataaa tcaGGATTACAAAGATGATCAGAGAGTAGGCTTTTCCTGCTGAATCGGAT AACTCCCTTAGTGTCCCTTTAGAATTTCTTGAATGAAGGAAGATATTTTT CAGGGGTTGAATTATATTGCTGGTATGTTACTTCTGATcacgaaaaatga agaaaatgctTTCTGGCTGCTTGTCGAATTGGTCGAAAATATTGTCCCAG GTAACTATATGATTATAGTAGAGGGAAGCGAAACACTataaacaatggat aatttttttatgtttttgtgaCCTCTAAGGCTTTCACTTTTAAAGTTTCT AAATGATCAGATCAATCCAAGATTTTCATTCCACTTTCTCACTAAGATAT CTGTATAATCTTCTAAGAAAATTTATGCATAATTATCTCAGTTGTCaact ttgtttttcatttcctTCCTAGATTTTTATTCAACTCATATGTTGGGACT TCGAATAGAATGCAAAGTATTACAAAAGATGATAAAGTATGTATagtgaa tgaaaatttaattgtAATCTAGTAGTTTTTTCGGACTTTGGCTGCTTATG ACTTAAATGAGATTAGAGAAATTTCCAGAGGGGATGAACTCTAAGAGATA CAGTCATGACTACACATAATCTGATGGAATTAATTCGAAAAAGGCTCTTA CCTTGAAATGTGGCTGCAAGTTGCCCTTGAATAGAAAGGTTTTGAACCCT TTTTGGGGCATTTTATGATGCAGTACCCtgcaaacaaaatttctaaataa atttcaaaataaatttcaacacTTATCTGAAAGATCATGAAATGTATATA ACGAAAATGGGGTcgtttttgaaatataaaaacTTCCTTCTAAAAATCTA ATTCTATCTTACGTCTCTTTCTAATACCATTTTGTATAGGCTGTCATTTC TTGTCTCTGGGAATACCTTAAGTGAATTAAATTTCacaaattaattttcg cggttttcgcgaaTATTGTCCGAAAATAACTCCTTGCGAAATATTTGAAA TCCCAAAATGAGGCCAATTCGCGAAATGTCCacgtgaaaattaatccact taaggtaccaatttcagaaattttcaccTTCTTGAAGcaatctttaattt tttctcttCGTTTTCAGTTTATTAGCTCCCGACCTGAGTCAACATTTTGC ACAGAACAAAATAGACATGGAACTGTTAGCATCCAAATggtttgtttgtc ttttcacAGACGTCCTGCCAGTTGAGGTAGATTGATTGCGACTTTtaagt tttttagtttccccctcttttttgctttccccccagaaaattctgataAT ATGAGTCCCCCCCATATACctatataaatttctcaaatttcaacctgaca caaacgaaaaattttgctgcaaaaggtatactagacaaaatagaacgaaa atgtATTGTTTACATTAAACATGCTTAGAAAAGCAGACTTAAaacaacaa tgaaatgaaaaattaaaatcctaaataacatcaaaacaacTTTAAAAAAT ACTGAATATAGGATCCTAAAATAANNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggaggac actatgtaaATTGTACTTCCCTGAAAAAGATCGTTTTCTAGTCTAAGGGT TGAAGCTTTTTATAGTTAAAAAGGCTAGAAAAATCGTCCGAATATTATTT CACGTGACTTTTTCATGAAGCTCTAGATTTGTTCTATTTCCACGTGACTT GGGGGAATTAAGtgctgtttatttttgtttatttcaatcTACTGACTGAC GCACACTGTAGACACAAACAGTCTATGTAAACAAGAATCAATTCAAATAT TGATGTTTACTTTAGAAGCTTTTTAAAATCAGAATTTAGAAAGACTAACA ACACCAGATTTAACAAATTCACGTAACTTTGGTTATCAACTAGTAAACCT CATTAAGATTGGAAGGTCTAAAAcctgtttttcttgaaaatggaTCCCAC GCACAACTCATTTCGTAGACCACAAAAATTATGTCATGGGATAAGAATCA AAAACTAATTGTCTAcgcaaaaaataaaatgtttcgCCCTTATTTTACCC CTAAAACGGTATATTTAGAATTTACATACGATGAAAAAAGTTCCTTTGCA AATTAATGGGGGGCATGCTTGAAACAAGAAATTTAATTGACTTCGCCTTT TCTGTTTTTTAGCAGTAGTGTATGATGAAGGTTTCGTCCTTTAAATTTAT ATTACGTTGACCTTTTTATCTCTTTATTTTAGACACAACTTCGTGTTTGG GATTGCCTTTTTTATGAAGGCTCGAAAGTCATTCTGAGAGCTGCTTTAAC GATCATCTTaatgaacaaagaaaaatttctggCGCAAACTGATTTCGCAT TACTTTGTAATATATTTAAGGTATGAAATTATCATAATGATATTAATTTG TGAAAATTGCATTAGTCTTGAGAGCAAGATCTATATTTTATTGGTTTATT TTTTCACGTACTCATTCGTTGATTCATtcattttttggttttcttttctG TTGTTCAGGAAATTATTCATGACGAAAATGCTCTAAACTGTCACAATTTT ATGCAGGTATGATTAAGGAAATAACATCTTTTCTCACCATATACTTATAT CTAAATTGTCTGAATGTTTAGAGTAAAAAAGTTAGGGGTAACCTTTTGAA GGCCTCGGATTTAAGTGTCATTCCAGGTCATTCTACTTCCAAACTTCCCA ACCAGTGCCCCGGGAAAAATCCTTTTTACTTATTAAATCTGGgttaaaac atgaatttatttctctatgtattttttattatatttttatcttaAGATTC TTAATTTGACATTcgcaattctttttttttcaaagttataACTGCTTATG CTTTCTTCAaatcttctttcatttttcttttattcacaGCAATGTTTCAT CTTACCAAAATCCTTATCACGTGCAAAAATCCAAAAGCTACGCGAAGAAG CACGGCTAGAAATTGAAGCTGAAAAGAGATGATGAGGCGAGGCAGCTTGT TGATTGGAAATGGTGGTCGGGTTTGAGAGATTATTATAAAAGCCCTTTTT TATGAGCTGGCTCAGATGTATTCGTCAATCTAAAAAGAAACCTTAATTCT CTAAACTTCTTTGATGGAATGTAATGGACCTTGGAAGGTCTTGAAGTACC GAAACTTCAATTTATTATCAAAATTATTATCAACCATGATTACTAATACA GATAACTAATTATGATTATCATACCATGACATTTCTTTGGAAtgttttta agatattaaattaTTACTAATAACGTTTGAAAAATCTATTCATTCTTAAT CACGATTAAGTTATtgcattttcttttaaaagacaTTCTCATTGATTTTG AATATAAAGTTCTTTTATCAAGATGTAGGTGTCTTtattaaaatgtttaa aatgtcAATGGCTGCCATAACGATACAGTCTATTTCTATCACTGTAATTT TTTCGCTTTGCCTGCGAGGAAATTGTCCAAATCTTATACCAGAGAATTTA TAAATTCTATAATCATTTTAACGAgataaattttataatttttaacaaTA TAATTTCCATGTCAGTTTAGATTTCTTTTTATCATAACATTATTTTGTTC CTGTTTTTATACACTATTGCATAGTATTTTTGTTTATATGCGACTTNTAA CATTATTTTGTTCCTGTTTTTATACACTATTGCATagtatttttgtttat atatgacttttttttgctaaattcatttttgtaaaatatttctttctatA TTGTGTGTTTTGTCTTATTCACATCCATCTTACGTTCAAAAGACGTTTTG TAAGATTTGGGATGGCTGTAAAGCATCAACTAAAGTTTTTGCATCAATAA GTTATGTAATAAGTAAAAACTGCGTAATTCGAACAAGCTTTACATCAAGT GACTTACATCTCAATTACGCGATgatagaaaattaaaacaaaattttgta gTCAAACCCCCTCCTATGAGTAATATTTACAAGTAATTTGCAAATTCAAA ATTATTGTTTAGGGGTAAACTAAGAGCTTGCAGGACACTGCCTTCAGATA ctgataatttttaatttaattataTAATTAATGATAAAAAAGAGGAAACG GCTGCAAAAGATCTATTGGAATGTTGTAATCAAATATTACCTTGTGTCTC TAGTGCAATAACGCTCTATGAAAATAGCATCCAGGCTAATAccttttttt atgaatatgAGCTGATGAACTAAATATTACGTATTTTTGAAGccatattt tgaattttaattgttATCACCCATTATTAGAAAATTATGGAAATTATTAT GGCATAATTGTTTATTTTATTGGAGAGAAattttattattaattattgaa aatgtattATGTATTATTGCTAGATCATGTTTTTTAATTACCCAATTAAA ATTATAAACTCTGTTAAAATTCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011109TCONS_00011109Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011109-proteinTCONS_00011109-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:505957..513029 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
GRTP1growth hormone-regulated TBC protein 1 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.27 4.23 1.13 1.27 12.94 10.31 11.37 12.81 9.83 9.77 9.8 5.88 10.46 9.68 9.21 8.11 17.11 16.36 10.24 12.49 17.06 16.28 12.96 14.61 8.94 13.28 36.26 27.17 30.08 31.3