XLOC_006057 (gene) - C. hemisphaerica

Overview
NameXLOC_006057
Unique NameXLOC_006057
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000117:117943..121842+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006057 ID=XLOC_006057|Name=XLOC_006057|organism=Clytia hemisphaerica|type=gene|length=3900bp|location=Sequence derived from alignment at sc0000117:117943..121842+ (Clytia hemisphaerica)
CGGCAACCCGATACTTTTACTATGCATCCCATCATTCGCTACCACGCGAT
CATGTGTGCTGGTTAACCTGAAAGACTTATCGTGTCATCCTTTATACGTC
GATGCTGACATGTTCAATGAGAATTACGAAGAAACGAGTGACTTGAATGA
CGAAGTAAAGAATGGTGGAGAGGAGGATGAAAAGATGGAAGAATGAGTGA
AAGAATGGTTGTTGTTAAACAAAGAGTTTCGTAAAGCAATGTCCGAAGCT
TTTTTGCTTGCTCTTTGATTCAAGCGATGCGATTTGATGGGTTCCATTTT
CATGATTATTCGAGTTATAGTTCGTATTGAAATCGTTATGAATCGTTCCA
TGGTCCATTCGACGCTCTCATTTGAGGAAAGTATTGAAAAAATTCATACA
AGTGTCGAACAGGGAAAGCAAAGAGTCTTCAAGAAGACTTAGCTATGAAA
GTATGGTTATGGTGCAGAGAATTTCCGCACAAGTTAATTGCTATCATTAT
ACAATTAGAAGGAAGTTTCATACATTCAGGTCGATTACCGTAAAAATACT
TTATTAGTGTTAAATATATAAGATACCCACACTCCATTCTCCGCATAGAC
AAATTGTACATAGCTTTAGCATATAATATCATTTGCATATTTATATCAAT
TCTATATCGAATAAAGATTAATTCCGCGCGAAAGCGTTTTTAATCTTTGC
GTTTCTCTGATTTTATTTTGCAATATTAGAAAATGGTCTCTggtttttgt
aataattttccATACTTTTAGTATGTATTCAACCAGATTTAACCAACTAT
ATTATATTTTCCCTCTAGAAAaacccaaaataaaaaaagataacttAAAA
AAATAGAGTAAATTTAACTAGAAAAACAAAGACGAATTTAAAAAACGAAA
CAGCAATAAACATGAGTGACGAAAAAACGAAAGAACaaataaatgataaa
aatgtagaagaagaagaaacaaaaaagaaaaaaaagaagaagaagcaaaA
AGTTCAGGTTGGTGATTTTCTAGCATTGGACATCCCCTTCATTTTTCTAG
CAGTTTGGGTTTTGAACCTCCATATAATTCCAATGTCTTCTGAACACTGC
AAACCCTCATAAGTTGTCTCCAAATTATGTTTCCTTTGCGTTATTGAGCT
ATGAagaatatttcatgaaaattatTCCTACTTAAATTACTCTCAAGCGT
TTAATAAACGGAGGGGGGGCtggaaattttgataaattgggggacctaat
taccgaTGGTTCCAATCCCCTTTATTCATTCGCCAAAAACTGGAAACTGT
CTTGTTATTATTTGCTTAGGACGAAGAAATAGAAGTGGCAGACAAATcaa
ccaaaaaagaaaagaaacataaaaataaGGTATCTTCTTTTACAGCTTTA
CCTATCTAAGACATATGGCGTTCTAAGTGTGAAGGCCATGCTAAGACACC
ATCCAAACGTGCAAACACTTCAATGAGGAAGGGCATAATTTTACAATCAT
CGAAAATCTAAGAAACATTAAAGGAAATAAAAGCCAGCTAAAGAACACCA
TTCTTACACAAGAGAACTTTTTGATCAACAAACTCCAAACCTTAAAACCC
AAGTGTTTAAACCAAGAACTAAACTGAAAGCGCCTTAAGTCTGTGTTTAC
ACGTCCATTTTTACCTGAGAATTTGTTGACTAATTAATTCAGGTGGGGGT
GCCCTCAAAAAACTATTTGTCCaatatgtggcccccaaaacgtcgatcaa
atttaaaatctttctcAAACCTAGAGGAAAAgacattttacaaaaatttt
tgctgcatgaaaaagtttaacatcTCAActttatttcccggaaattattt
ttcaaaattttcaattttaacaatatttttcaatcgcttaaagataggta
gcttttttctaatggcccccaaaacggaggtttgcaattttagcgatttc
tcgagatatctttaagatatgaatacaaaattttgaccatagttttgaaa
tgtgatttagagggttttgggaataaatttgtttgataaaatttttacag
tataccccctggttgtcaaaacgcaggtttggggtccccaaaacgtaggt
gtgGTTAAATTATTaggcccagtggtaatagggggagtaactatgaacat
atttgtgttttcccttaaatttacgacccgatggatgtaaaatttatgat
ttttataaaatatttcaaaaatcgtctaattctgataaatatacaggtca
gaatcttcattttaatgacgacctacgttttgggggccgtctccgttttg
ggggccgtttccgtcaacaatattttttgaaaactccaCGCAGTCTCTTA
AAAATAGGGAAGGTGTATAAAAGATGCCCGAAATCCAGGATCTCGAAAAT
CTCGGCTATAATCAAGGGAGGGTTTGGCATTCTGACAGTGCCCTGTTCAA
TGCTGCTTTATGAATTGATGAAACAATTACAATTGACCcaatacaaaaat
aattaaactatggaaattttcttcaattttttttgaaaaattgcaaaaat
tctgATAAATATTTCCCGGAATAGCTCATTACACGCTGAGATAAATGTGA
CAcgactgattttttttattcagacATCTCGGGAGGATGAGGACCAAGAT
GCTGAAGAAGCAATAGACGAACCAAcaaataagaaaaagaagaagaaaaa
atcgaaagcagaaaatgaaaatgaagatgaagaacccgatgaaaaagaag
aacctgttgaaaaagtaatgaataaTGATTTTAGGATCTGAATTAACGCT
TGTTTCAGCCTTAAAGTATCACGTGATCACTGCCATACACTCTTTTCTAT
AAGAACCAATAAATATCTTATGTGGCtcggttgttcttattttttttggc
attttcagcctaaaattgTCCTTACCCTGTTCTTCTTTCCAGAACAAAGC
TGAGAAAAACAATTCAGCAATCCCCGGCGCTgtcttttaattgtttttat
tttttggcatttttgagcctcgttgtttttatgaaatatggttttgataa
aaaagagtAAAGTTATAACGGGCATTTACGCTAACTAGGATTGTCTGAGC
ATATGAACCATATGAGGGTATGACCATAtgaataaagaaagaaatatcCA
ATAAATTGATGGTTCTCTTCAATCTTTTTCTACAGAAAGAATCAACGAAg
cccaaaaaaaagaagaagaaaaataagctAGTAGATGATGAAGAAACGAA
AGAAGTTGATGAAAAGGACGAAAgttcaagcaagaaaaagaaaaagaaaa
gaaaaaatgaagatgctGATGACCAGAGTAAGTGAAGAAAAACTGCAGGG
AATTTAAATTCGAAAACAAGTAAACTCTCATTATAAAATCAAATgccctt
ttttgtctttttcagcGCTCACAAAATCTCGAAAGCGAAACTATGCGATC
TTGCTTAGCGACATCTTGCGACTGTGTATGTAGGCCATTTCATGGTCGAA
ATAATGATTGCTTACGCTCACATAACGGCTTTCCGTTCTAGACTTAACCC
AGCACCACCTCGAAATTGTAGGCCAATTTAAACTCGTGATCAGAGTGCGT
AGGTACTGATTACCCACGATTCATTTCACTAAGGCTCATTTCACTAAGAC
TCATGCTGATAAGGAAGTTATTTTTATGATTCCAGATACGGATGACGAAG
ACGCAATCAacgaaaaaccatcaaaaaagaagaagaaaaaacataaacaa
gaGGAAGATGAATGCACGAATAGTGGTGAAGATTCTCCACCAAAGAATGT
CAAGGATGTGGTAAATGATGACGATGACggtaaaaagaagaagaagaaaa
agaaaatggaacGAAGGAAAATGAGTGATTCTGAAGAAGAAGAACCTAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010783TCONS_00010783Clytia hemisphaericatranscript
TCONS_00010784TCONS_00010784Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:117943..121842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.81	35.79	49.5	52.67	28	21.67	21.63	22.61	5.57	6.58	4.42	4.41	4.4	4.83	8.02	8.81	9.74	10.68	3.19	4.17	9.08	8.65	18.94	15.31	17.24	17.71	7.78	3.33	8.2	8.97