XLOC_005360 (gene) - C. hemisphaerica

Overview
NameXLOC_005360
Unique NameXLOC_005360
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000097:528530..537323+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005360 ID=XLOC_005360|Name=XLOC_005360|organism=Clytia hemisphaerica|type=gene|length=8794bp|location=Sequence derived from alignment at sc0000097:528530..537323+ (Clytia hemisphaerica)
CGGCAAATCAAATATTCATTAAATTATAATTTTAACAATACTTATATAGC
ACAAATTGCCTTGGGAAAAAAGGGGTAATCATAGCTATATTATTATTATC
GGGCAATAACATGAAAATCTTATATCCACGAAGAAGTGAAAGGAAGAACT
AAACCAGCTTTTCACCAGAGGTTAGAGAGTGTACCCCATAATGCAatatg
atggtatgatggtgATGATATCGCTATAAATTTGGCGACACGCCCCGAAT
GTTTGGTGCGGTCTTTAAATACCCCGGAATTCACACTTTTTGACGAGCCA
TTTCTTCATAAATCCGGAAAACTACACTTATTGGGCGCCGAATATTGAAT
AATGGATGTATCGCTAAAGGGGAAGGTGTTTGAATCAGGGAAAGGTgagt
tttaaatttcaattcataAATCTTGCAAGAGGTTATTCAAATTTCTGCTG
CCTCGAAATGTAAACTAAGAGgtaaaatttgatttaaaaggtAGAGTGAT
ATTGTGTAGATGGAATGTGAAGaaaaaatcaggattttcattattttgaa
aaatatttttgttgtgtTGTTTTCCTACCTACTCGTCACTTCACTGTcaa
gagaagaaaatgtttCATTCCAAAGGAAGTAAGGATGCTTATTTTGCTTC
TTGGTGACCATTGAATACATTGAATATGTCACTTTTAACTTCTGTAAAGC
CATACAAACATGCTTATTATGTCACTTGTCCAGCTACTTCTGTACAGGGC
TGGTTTCTACCTTTTTTTTGAGACATATAGCATGATTTTGTTTTGCAACt
cagaatgaaaaaaattggttttagTAGCTATTTAAAGCCTTTGTGAATGA
AAAATCCCCTGGGCTCTGCCCTGATAAATTATATACTTTGGTGCACTTAT
TTTTTGTGCtgtatttttgttttgcttcttGCGCTCTGAGCAGTCtctga
cagttagtcacactaggaaatctagctttcagaaaaaacaacatcagtca
tctacaggatatatttcaacaacaaggatgagagttacctgaatcaagNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgcatttttttgcttgagagtcaagtaaacg
atatagcgctttcgcagcattaatctttgatacgcattttggcgggacgc
tagtgtggctaactgtcTGAGTCTGTTTGCAAGTGGCTCTTATTCCAGTT
TCTACATCGCTACAGTATCATGAATAATAAAGAGTTAAACTGGGATGTGT
ACTGCAATCTACTGGAAGATACCAATGTCATACGGTCCCATTAACAATAA
AGTATGATGTATAATTAGTCCCTCTAGAGACTACTACAAGAGTAAAGTAT
GAAAATctccaaaatcaggaaaaactgtGAATTTATGAAAGAGTCGTACG
TAGCCTTTTTTTGAAACCTAGAaacatatatatatttttaaatatcCCCC
AATTTGATGTATGAAATGTTCCTAAAATATTTGACCATTGATTGAATTCT
TGGATGCAAAATGCATTTCTCTATAACTTCTTGTTCACAGGAAGGAAAAT
CCTCTGATCTTTCCAAATGCTATTAAAACGTAAGATTTGTGATCtcaata
aaattttaagaaaatcaaaatgttttgtGGTATGTCAATCAAGTTAAGAC
AGGTTAACATTTAAACAAGATACAATTGTCAACTTATATATCTAGTGAAT
TTGAAAAGAGACTCAACAACAATTTACTGAAGAGACTGTCACAATATGTA
ACATAGTAAGTATGCACGATATGACTGTAAAAAGAATTGAGCAATAAATG
ATAGCTTCTTGTAATCTTTTATACTTCAAAACCTTACCATATTCCAAGCT
TGCTATTTGAATGATTCTTATACAGTATATATTGATAAAGATCTTAAGAG
ATGGTATtacaaaatgacttattttgaaacaaaagttttttttaaagcag
AGTATAAATTCCTGTATTTCTGTAAATTCAGTTGTAactatttgaaagtt
ttttaaaaattgatttcagCAATACATattcaaaaatgaaagagagtaag
tatataatattatatttttcagtctttttttttgttttttttgaggATTG
GATTGAATGACCATTTAATCATAACTTGctattgcaatttttttctcagC
AAGGTTTCTTCACGCTTAAGTTAAGGCAGAATATTGCTATACCCTGTATT
TATGCTTTAAAGTCATCATCTGCTATATGTGAAACTTTTTCTAATCCATC
TATctatttatctatctatctatctatttatctatttattttttaaagta
tcATAAGATGCAATCTCATACTCGCCAAAAAGGCCCATACTGTAAaacat
actctcgggtacctaatagccggggggtttggaataagcgggggggggtt
gggaaaaatctcaaaacttaataggcggggggttggaataaaaatgtcct
gggtggaaaattttcgaaaaattaattagcgggaggacggctattaggta
cccgagagtatttgTGACCCTCTAAGCATTGTCAATTTACCCTTTTAATC
TAATAATATGTTATTCCAATAAGGGAATTCTTGATAAACATGTTTAACAA
TTAAATATAACTGCATGCCCCCTTTAAAGTTGTGAAAATATTCTGGGAAg
ttctttaaacttttaaaatcagcaaatcttGTGAGAAAAGTAATTCCAAC
AAAGTACCTAGTCTGTACTCTGTTTCTATCCTCCCTTATGAGCTTTATGt
gttaaaaaactttcaaaggcCTTTGAACTTATGATGAAATACTTTTTCAT
TGTGTTTAGTTTAGAAAACAAAATACCGTGTTGGTCTAAATAAGATATTG
TTCctggaaaaagaaagaaaacttcATTTCTGTCTTTACCAATATCCCTT
ATTATTAAAAAACTTATTTTGTTAATGagatctgaaagaaaaattaaaat
aaagccCAAAACACTGCCCGAACTGTGTATTTCCAGAAAATAGTTCATAG
TGAGCACAGTAGACTTCATTTTCTTCATGTAACTTTCTGAGAATATTGGA
TATTAAAAAGCTAAAATTATTTTACTCACTAAGTTCTTGAGTTCTTGCTT
GTCAAAACTCCTAAAAAAACTAAATAGTATTAAAAATTGTATTCCTCTAT
AAGCTTTTTAAAATATCATCTTTCTTCCAAACGCCTTTCTTCAAGTCCAA
TAAAAAAGGGTTTATTTCTCATCATATCCTATAATATGTATAATATGATC
CAAGTATTGACATCCTACCTCCTTGTTATAACTACAGTAGATAATTAATA
AACAAAACTCCACCTTGAATTGAGGTAAAGAATGATAATTTCAATAATCA
TGATGATAAACTGATTATGAGACCACTCTAAAAACATGAGCATGAGTCTG
TTTGAGATGTCTAGTCTTATTGAATAATCATCAATGTCATAAACagtata
taaaaacaaaaagattatgtGATAGTTTCTATTATTACATTTTGAACTGT
CTTCCCTTTTAGAATCAGTGTTTGAAACTAGAATGACACTGTTACTTTAG
ACAATATGTCTTGAAACTATCTCTCTAAGATGAAAATGTTACTTTTGAAT
ATAGTTTtttaaaacaaagatttagtaTAAAGATTTGATTTGTGACTTTG
TTGTTGAATGCATTTGAAAAGATTGACCTATTTACATAGGGTAGTTGAAA
GAAATCAATTAAATATTAGTAACATTTTATTTCACTTGAAAGATTAACAT
TGACAATCTTAAGGAAACTaacttttttatcttctttctCCATGCTCTGG
CAACctctttatcaaataaatttgattCAACATTAACAGTTGATAAGAAA
TTCTGATATTATAACTCAACTAGCCCAATCATTTCTCTACGAATACTTCT
CTCTATCAAGCTACTAAAGTTAATGGTCCCACTCCTAAGAGCCAACTATT
TGCCAAACGAATTTGCTGTCATAGCAACATAGCataaattacctatttca
tTATATTTTGAATAGCACTCAACAATTAGTTTCTCTAACAACTGTATAGC
AACGAAATGAGGTGTGTTGCACTCTAATGTCTCATGTCAgcttttggttt
gttttgtagTAGTTGTTGTGAGTAAAAATAGTTTGAGTCCTAAAGTAAAC
ATTGAACCTTTAGTAATATGCAACAGCTTTTTTTCATGACAGTGTAGTCT
AGTAGGatggttttgaaaattatataaaCGTTGAGGGAGTTGTGTTTTGA
TTTACTTGGTGTCACTCAAATAATGTTAGATTCGTATTATCATAGTTTAC
ATTATGATATAATAGTGTGTTCTCTCCTGATGTGTTTTGATTCTAATGAC
TGATATACCAGGGCTTTTATTGTCACTCTTTCTTACACTCTGAACTCAAA
ATATTATCTGAAAGGGATCCCTGTagtattttcaagtattatTATATACT
GTATTTTATTATAACACTTGAATTTTACTTGAATTCTTTGTGAAGACtca
atttatcattttatagTGTAAAGAAAGTTATTATTGATGGATTATCTTAA
CTTGGTAGGGAGCTAACACAACATAGTTAGATGAAACGAGTTGTTTTTCG
GGTTTTAGGCATGGCTTATTTCTCAAGTCCATGCTAAAACTCTAGATTAA
AATCATCTTATACTGATTGCAAGTTGTTCATAGAAGTCTTAGATTTTTGT
AACACATAGTTAGAAGGATTTCGGTTGCTTTAAAAACTGATACCCAGAAC
CGATTTTACCCAGGTACCCTCTGGTTTACAAAGAGTTCTTGAGTTTATGG
CAGTATTGAACAGCGcactattttcattttttgaacaacatagatatttt
ttatttgtcttTTAATCAAAATCCTAGACTGCAAAAAAACACAACAGTGG
ACTTACATTCAAATTATAATAGGGAAAactaaagaaaagaaataatttta
tataattttctCACTCTGTAGGTATCCAATTTCATTATCCCCAGATGGGA
TGAAGTTTTAGGGTTTAGGTCAACTTTTCTATTGATAAAGTcatctttat
tttgtttttaattcaattttatcAACACTTTTGTGACCTATGTTGCAATC
AAGTTTGATAAACTTTGGATGGGCTTAGATTACTTTTGGCGATGAATTTC
GAAATTGTCATCACTAACGTTAATTTTCTCTACAGAGCATAACGTTTACT
GGCAACCTTAACAACCTAAATCTACTCAAGTTACTTTTCTCACTTCGAGA
TTTACCTTTTTGACCTTTACATAAAACTATGGTTCAAATGCCTTCCCATC
AGAAAAATGTCTTGCTCGGGGTAAATACTTGTATATTAGTGTTTCTTTCT
GttgcaaaatgaaaattatagtGGAGAAAGCAATTGGTAGGTCTTACTTT
TTGATGAGAAGTTCCAATTTAGAATTGTTtgattttgtatatattttcct
gaaagaaattaattgttctttttttcttcagccTTGACAAGTTTTGTTAA
TTTATATGGGTCTTCTTTCAGAAAAGGATTTCGAAATCTCGAACTCTACT
CATCTTAAGATCTAGCCACgttgaaagttttctttttgtcaAAATTGTTC
TCGAATACTCTCACGTCAAAATAAAGTTTTCCAGTTGGCGATTTCCTGGG
ACAATACTACCAAATTCTACAAAAAATCGGAATTGGAAATCTACCAGAAT
CTACTATTTTAGTTTTCTCAGATTTTACAAGCACTTTCGTTATAAGGAAC
TTTTAGAATTGACTTTCTAAGGGCCTCTTGCTCCACCTTCTTGCTCCCTT
CAGTGCTCCGTAGAAATTTTTCCATAACTTCACCAGCTTTGAAGAAAAAC
AGTTATGAATTCCAAAGGAATCGTATAGTGAGAGAATAAAATTAAAACGT
ATATACTACTTGGTCGGGTCCTCTCTTGAACTTGTGAAAATTCGAAATTC
TGTTTTGCTGTTATTCAGACATCTAATTGTAGTGGGCATTTGGTATTTTG
TTTAATGAAAGTGAGTTTCTCTGAACGgaaggatttttttttggaactaT
TCGTTTGGCTGGTCTATGTTAGTCTAAAGGAAAAAAAAGCTCGAGCTAAA
TTTCGTATTTTATCATAAAATTTATGCAGCTGACCTCAATACTGTTATAT
ATCTTTATATATCTATTGtagaaaaaaaagttctttCGAACTTAAGTATG
ACAGTTTAATTTCAATATACAGTGTTGCTCCTTTCCAAATCAGTGGAATG
GGTACGtcaactgtttttctttgagtCAACATACAACATATTCAACATTA
TACACTGTAACACTGATGTCTTTTTTCTCTCTCATTTTCAGATTTGCTTC
AAAAATACAAGGGGGCGATCATCTTCCTGTTTGTCATCCTATTTATAACA
ATCTTGCTGGTCACACTATACCTTATGTTAAAGAAAGGcttctgttgttg
ttgttgcaacAAAGAGAAAGAGGACGAAGAGAGTCTTTACACTGACCTCG
AGCATGATGAAGAAGACGATGAGATGGAGGGTCATATCCCTCCTCCAAAA
GGTGAACTTCTCCACAGCGGTGAACATCACTTAGAACCCGAAGAACGTGC
CGTAGAGGAGCAGGAACATCACATTCCGGAGATCATCGTCACCGAAGGTC
ATTTCGTCCCTGAGAAGAAGAGCAAGAAAAAACAACTGTCCGGTATGTTG
AAACGAATGCGACCGGGCAAAGGAAAAGTCCGATTTAGCCCGTCTAGTGA
ACAGATCAGCATGATAAGTTCAGAAGGTAGCACCATTACCAGCGATTACG
GATCGACCACGAATTCCTTACCTATTCACAGATCAGATTCTATGGAGAGT
TTCATGTCGGCTGTTTCGGCCGCTACAACGAACAATATCGATGAGTTTGG
AGATGAACTTTCTCCGAGTCGTTTGCAAGTTTTTTTACATTATGATCCGA
AATTATGGACTTTGACAGTAGGTGTCAAGCAAGCTGATTGCTTAGTATCG
ACCACAGGTAGTGCCATGTATTGGCAAGCACATGTAACAATATTACCCTT
TAAAAAACATAGATTCAAAACGAAGTATAAGTCGACATCGACACCAATTT
TTAATCAGAACTATGAAGTAGAAAACATCGCGCAACAAGCCCTCTCACAG
CTTTCCGTTCGTTATCGGATCTACGGCCGTCCAGGGCGAGGTGGGCGTAA
AAAGCTGGCGGGAGAAACAGAAGTTGAACTTTCACATATAACCCAGATGG
AGGATATGATAATAAAGGACTGGCGTGTTTTGAGGCGTAAAGGTGGACCT
TTCATCCGCCATGAAAGTGAAGTTTAGATGTTTAttttaaattcttattt
ttgggAGGGCTATAGTggtatatattttattttctagttttatttttctc
gtgttgttttttattaatgacattttttgAAGGCTTAGTGTAAAGGGCTC
TGTCCAGAGAGGAACCAGCTTCTAATTTGCAACGAAAAATTTTTCTATTC
AGATATATTAATGATTACTCAAACTGACTCGGTGAACtctgaagaaaaat
taaaaggagCTGCATAAAGATGAATCTccctcttttttataaaaattact
cATTTTTAATGGGTTATTCACTGTTATGTTCtattgtattttaatttttt
tacattttaatttaCAACTTGGGGTATTTTAAGTGAAAAGTACATGGCAA
ATATGGAGAGATCACTTTACTTAGTCAGAGCCCGGAGAACTGGCATAATT
TTATAGTAAAGACAGAGACTTAAGGGGAAGCACAATTTTgacgttttgat
ttttgaattcagACTTTATCTTTTGTTCTCTGATCAGAGACTAGAACAAT
TATATCATTCTATCAAAGTTTCCAAACCTGAAGCTTTTACCTGTCGATGT
AGAATAATTGGTAGTAGTATTCTTGTTAGATTTTTTAGTAGCTAAATTAa
gggagatattttcgtgtttttctaaccaacattttctttttttaattcat
ttttataTGTCATCATCCATACTTGTAAAAATAAACCATTAATAGTCTAC
TACGATAATTACACACTACATATGCAGCAATCgtaattcaaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009597TCONS_00009597Clytia hemisphaericatranscript
TCONS_00009598TCONS_00009598Clytia hemisphaericatranscript
TCONS_00009599TCONS_00009599Clytia hemisphaericatranscript
TCONS_00009600TCONS_00009600Clytia hemisphaericatranscript
TCONS_00009601TCONS_00009601Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009597-proteinTCONS_00009597-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:528530..537323 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.41	10.39	26.89	36.59	86.67	70.37	90.03	90.87	48.57	49.59	28.01	25.37	25.47	23.33	22.62	27.44	13.77	17.94	19.09	25.12	7.07	6.42	14.1	13.07	11.79	13.13	6.49	2.97	16.52	21.31