XLOC_004275 (gene) - C. hemisphaerica

Overview
NameXLOC_004275
Unique NameXLOC_004275
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000078:189544..199578+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004275 ID=XLOC_004275|Name=XLOC_004275|organism=Clytia hemisphaerica|type=gene|length=10035bp|location=Sequence derived from alignment at sc0000078:189544..199578+ (Clytia hemisphaerica)
AATGTGTGATCCAACTTGTGAAAATGGCCATTGTTTGTCTCCGTACAAGT GTAGGTTAGTTGATTCAtgttttacaaaaattgaaaatttaaggATCAAG CTCGTACCAATTTCTCCTCATAATTAGAGTGACAGGTTCTGAATATTTAT TGATGtcaaatttatttcttttagTTGTAGTCGAGGTTGGAAAGGATATA CATGTGGTGAGTGTGTTGTGGGGCCTGGTTGCCTTCATGGTACATGTGAC GAGCCTTATGAATGCAATTGCTCTGAGGGATGGTCAGGTGGGACTTGTGA TACATGCGTCAAAGCACCTGGCTGTGTTCATGGGGCATGTAACCTACCAG ATGAGTGCAATTGCGACATTGGTTGGACAGGAGAAAACTGTGATCAGAGT ATGTCATTAGTTATCAATATTCACTTTGAGGGTTTTATATAAACTTGATA CCAAGGAGATGATGTCTAATATGTTGCTTTTTTAAGATTCCACTGTTGGG GGTGTTTCTGGTTTTTATTCATGTACATGTCAATATAACAGTTACTCATT CTATTGGAATttaaaattatcagaaattaGCAAAATccattttaaattat ttatgTACATTCATTTTAATTTAAACTAGCTATCAAGATGTTTACTAGCG GAAGTTTTTTAaactaaatgaaaaataatttgcatTGAGTTTCATTAGAT TTccaattcaaaaaattgaaattgttttgcttgtaaaattcaTTCTTCAA TTATTCATCAAGTCTGTGGTTCACTGAGAGACATTCTTCTGTGTGACTGC TTAAGTTTCCCTGACACTACCATGCGTACCaaaaaagtttatttaaaaTT AGATGTTCCTTTCATTGGCATAACAACACTGATGTAATTAGTCTATTTCC ATCCACAGATCCACACAAGATATGATTTTTATAATCCTCGTTTCTTGTTT ACATCACAATTAAATTGCCAAATAGCACCACTACACTTTATCCCAGCTTT ACGTCTATGTTTTCCTAttccaaatattgacaaaatcacATAAAGTTAAA TCTCAATTCTTGatgcttttctttattttgcagAAGTGACCTGCGATATG CAGCCATGTGAGAATGGTGCATTATGCCTTCAACACAGTGATAATTACAC TTGCCAATGCCCTAAAGGATTAGCTGGAATCCATTGTGAAATCGGTAAGC TATCTGGTTTTATAAGGACTCTTATAACTAGTCCTTGAACCAATCAATCT GCACATAAGTGACAAATATCtttgaaaggttttgtttttaagtaagagtg atatcgtttgcttgctcatcaattttaattcaccagctttttcacattgg attgacacggatgtggagcaagattggcccaaaagaggaaaagaaaaaca actttttgcttatatcagcatgatataacaataggaagacactgtcctgg tatgaaatatgtgtctgacatgaaacgggaacactcatgtaaaaatgaaa cctttaatCACAAGTCAAAACCatctaaaaatattatatttatatttttt ccttCTCTTGTTTTAGACATATTAGATCATTGCGATCCTTTTCCATGCAC TAAATCGTCAGCCATTTGCCTTGACAAGCCGTTTGGTTATGAATGCAGCT GCCCTCTTGGATGGGGAGGTGTCAATTGCACTGGTAggttatttcaaatt tatttatatcCGTTTGTCTACCTAAGCTAACCAGTTTCACCAACTGATGG GTTATTTCTGGTAACTTTAAGGTCTCAACTTTAAAAGATCACTCAACTCT GTAAAGAAATTTCTGAGACTCTTGTCACTTTTGTGTGTCTTCTTCTGAGC AGAACTTGCAAATTAAATGAAGctgttttatttaaaaagaaatgcTACAC TTTTGGGTAGTCTTCATATTTATCAGGAAATGAATGATTTCTTTCTCGTG CTATAGAAAGGGATATGTGCAGCTTGGATCCTTGTGTAAACTCTCATGAA TGTAACAACATTGGAAACGATTATTACTGCTCTTGCAAACATGGATGGTC TGGAAAGAATTGCACTCAAAGTAAGTACATGACTTCTTGCTTGATCTTGA TTCATATTTTAGAAATCAAGTCATTTTATCGTCATTACCATCATTCATTG AAATTAAGAATTATAATAAACAATTCACATAATTCACCTCactatatttt gcaaatatgCGTCGATTGAAATTTTCCTGGCAAATATAATTTATGacaaa tttgatttgaattttagaCTCCAATGATTGCCATGGTCAATGTCAAAACA ATGCTACTTGTGTTGACAAAGTCAGTGAATACTTGTGTGAATGTCAACCa ggattttctggcaaaaattgTGAGATCAATGTGAATGAGTGTGCTGTCTC ACCATGTCAAAACCAGGGTGTTTGTAAAGACCAGATTAATGGGTACAAGT GCATCTGCCAAACTGGTTTCTCTGGGAAGAACTGCTCTGTTGTGTTTGAT CGTTGCAGTGAAATTCCCTGCAAGAATGATGGATTGTGTACTCGTTTTCA TAATGATTATAAATGCAAATGTGCGAAAGGCTGGACTGGTAGAAATTGTG ATAATCCAATTCATACTGTTGGTAGACTCCAAGAATGTAAAAATGACCCT TGTAGACATGGCTCTACATGTTACATGCAAGCAGGGAAAGAGAAATGCCA TTGCACTGCAGGATACACTGGGCGATATTGTCAAATTGATATAGATGATT GTGTGACACACAAGTGCCAGAATTCTGCTCAATGTATCGACCGAGTTGAT TCATNTCGTCATTACCATCATTCATTGAAATTAAGAATTATAATAAACAA TTCACATAATTCACCTCactatattttgcaaatatgCGTCGATTGAAATT TTCCTGGCAAATATAATTTATGacaaatttgatttgaattttagaCTCCA ATGATTGCCATGGTCAATGTCAAAACAATGCTACTTGTGTTGACAAAGTC AGTGAATACTTGTGTGAATGTCAACCaggattttctggcaaaaattgTGA GATCAATGTGAATGAGTGTGCTGTCTCACCATGTCAAAACCAGGGTGTTT GTAAAGACCAGATTAATGGGTACAAGTGCATCTGCCAAACTGGTTTCTCT GGGAAGAACTGCTCTGTTGTGTTTGATCGTTGCAGTGAAATTCCCTGCAA GAATGATGGATTGTGTACTCGTTTTCATAATGATTATAAATGCAAATGTG CGAAAGGCTGGACTGGTAGAAATTGTGATAATCCAATTCATACTGTTAGT AGACTCCAAGAATGTAAAAATGACCCTTGTAGACATGGCTCTACATGTTA CATGCAAGCAGGGAAAGAGAAATGCCATTGCACTGCAGGATACACTGGGC GATATTGTCAAATTGATATAGATGATTGTGTGACACACAAGTGCCAGAAT TCTGCTCAATGTATCGACCGAGTTGATTCATATGAGTGTGTATGTCCCCC TGGCTTCAACGGAAAACATTGTCAAAATAATGTTAATGAATGTGAAAACA ATCCATGCCAAAATGGAGGTAACTGTACAGATGGAATAAATGGGTACACC TGTCAGTGTCCCATTGCATATCGTGGCCATGATTGCTCCTATAATATCAA TGATTGCAAAAATATTGTATGTGAAAATGGTGGAACCTGTCTCGATGGTA TCAACAAATACAGCTGCAAGTGTGCGTAAGTAAATTATTCTCAATCTTTC CATTATTTTGTGTTAATCATTTTTGCTTTCTCATGGTTGTGCTGTTATAG ACTTCATGAAAACCGATGGTTTTGTAATAAATCTCACACGAGTATTCTAT TATTCTAGTGAAGGATTTATGGGCCAGTTTTGTGAAATTCAAGCCAATCA GTGTCTTAACCGTTCTTGCACCCATGGCAAATGTCTACAACAAAGAGGAG GTTATGCATGTGTTTGTGATCTTGGGTACATAGGAGAGTTCTGTGAGGAG GAAATCAATGAATGCCTTGGCATAACTTGTCACAATAAAGGAAAATGTGT GGACAAGATTGGCCAATATGAATGCAATTGCTCCAAGGAGTTTTATGGTa acgttttttattttatccagCATGCTTTTTATTATCCTAGagttagaaac aaagcaagTTATTACCGTTGTAAAGAGTGTTCAATACCATCAAAATGTAG AAGAGAGCTGaatcaatttcataaaattgcGAGATTCATTCTAGAGTCAG CTAGAGTTACAAAACTACTTATTCACGTCCAGCTTTTATATTTACAATTT GCCATATCTTTTGAAATCTTATCAATAGCTTTACTAAATTTTCAGGACCT AACTGTCAGCACATCAATGCATGCCTCAAAAATCCATGCCAAAACAAAGG AGTTTGTTTTAATGAAGGGGATGGCTATCAATGTAAATGTCAGTCAGGTT TCTTTGGAAAGAATTGTGAAAAAGGTATCTCAAAATGTTCCGTACGTTGT CTTTCTAGATTGTCTAAGATCACCAAGTCGAATATGtcattttcaggttt tttaCGGCAAACCAATCAAGAAATTACCCAACGCAGTTGTGAAGCAAACC GTGTAACggctttaaaaacaaaatagataTGTCTGTGTTTATGTTTGTAT GTTTTTATACGTATATTTCGTTTTACAGCTGAAGATAGTTGCATGGTAGC AACATATAATTCCACAACAAAAGGCAGTTCTTTGGTTCCCAGAGGAGTAT GTGGTAAACATGGAAAATGTGTTTCGTTGAGTGTCAATGAATTCAAATGC AAATGTGAAAAAGGATGGACGGGTGATTCTTGCAGCACCAGTAAGATATA TAATTATTATCCATCTCTTGATTGGACTCCTCAAGTGATCTGTATGTCTT TGTTTGCCATTGACTTAGATAAGCTCACAAAACTCAGACATCAGTAATTA CAaggtcatgcataattatttcGAACTTAGATATTCTAAGTATTCTATTT CAGGCTCGCTAATGCATAAATTCTCCCTTTTTCCAAATTCAGACATCAAC TACTGCCAAGGAAACTTATGCAGGAATGGTGGAACCTGTCTTCAGATCAA CGATGGATACATTTGTAAGTGTGGAACTCCATTCAGTGGCAGATACTGTG AACTGTCCATCCGAAAATGTGATCGAAGACCTTGTGACAATGGTGGTCTT TGTATTGATCTGCCAAATGATTACAATTGCTCATGCATCAATGGCTGGAA AGGGAAGACTTGTAATTCAAGTAAGAATTGTTATTTAACAACGGCTACTT TAAACTTTCTAAGGAGCTTGGTTGTGACAGTAATCATACCAACAGTGACT AAGTGATGATAGAAATGATAATATGTTTTCCCTTTTTCTCATTTCAGGAT CTAATAATTGCGATAGCTCGCCATGTTTGCACGGAGGAAATTGTACAGAC TTCGGAAACACCTTCCAATGTCATTGTCCTGAAGGATTCGTTGGCCCAAC ATGTGCTGAACGAAAAGATCTTTGCAAGACTACCAGTTGTTTGAATGGTG GGACTTGCCTTTCCTCCAATGACTCGTTTGCGTGTTTATGTCCAACCGGT TTCTCTGGTACCTATTGTGAAAAAGGTATGTCTATTTTTAAGTATTCATG AATTCAGATTCGGTGGTTTGCCTGCTTTTAAATATACGATTGTACGATTC AAATCTATCCATTTCTCATAGATATTGATTATTGTGCATCCAATCCCTGC AAGAACCAAGCAGCTTGTCAAGATGGTATTGGCTCATATCACTGCATTTG CCAGACTGGTTATGTTGGTTCCGATTGTCAATATCCAGTAGATCAGTGCA ATCCAAACCCTTGTGCAGGAGGTTCAACATGTCAGAACGTTGCAGGAAGT TATCGATGTGCATGTCCTGAAGGCAGATATGGACCTAAGTGTGACAGTAA GAACTTTTAATTTAATAATACCATTGTTCAAACTCTTATTATAGTTCTCT GGGTTACGTATCTTCATAAAACTTTCTGGTACGACTTGAGTTTGTTTAAT TTAGCCAAGATCATCATAGTCATAGGTGCTTACTTTTAAAATCTTCTCAT CACCTTTTATTTTACTTCAATAGACGTGAAGCTGCAGACATGTGTATacc aaaatgaaactttttacGACAACGAGATCTGGAAGTCAGATTGCAATCAA TGTCGGTGTAAGAATGGTAAAGTGACCTGCAATGAAGTTGAGTGTGGTCC TGTTAATTGTTACAGGAAGGAAAAACAAAACTCTGATTGTGTATGCCGGG AAAAGCCTGATGCTGATTGTATCACACCACCATGTCCGAAATGGGGTGAA TGTGTAACTTACAAAACGTCAAGTATCCACAATGGAGGATGTAAACCAGC GCTGAAGGAACCAAGTTTGAGTAAAGACTGCTCCAGTTTAAACATCAAGT TCGAGAAAGTTCTCCTACCACCTGTAAGTTCTTTCAGTAAAGTCAATTAT ATTTACAGGTATTTTCTCggcaaactattttcaaaaggatTAATAACATA CAGAAGAATATATTGCAATTCAGAAACAGGATTACTATTTGTTTTTATAC CATAATTTACCATCCTACAATTATCATATTCCATATAACTTTACATTCAC TTTTCAGGGCATTTTGGTTGAAGAGATATGTGAAGAGCTNACTCTTATTA TAGTTCTCTGGGTTACGTATCTTCATAAAACTTTCTGGTACGACTTGAGT TTGTTTAATTTAGCCAAGATCATCATAGTCATAGGTGCTTACTTTTAAAA TCTTCTCATCACCTTTTATTTTACTTCAATAGACGTGAAGCTGCAGACAT GTGTATaccaaaatgaaactttttacGACAACGAGATCTGGAAGTCAGAT TGCAATCAATGTCGGTGTAAGAATGGTAAAGTGACCTGCAATGAAGTTGA GTGTGGTCCTGTTAATTGTTACAGGAAGGAAAAACAAAACTCTGATTGTG TATGCCGGGAAAAGCCTGATGCTGATTGTATCACACCACCATGTCCGAAA TGGGGTGAATGTGTAACTTACAAAACGTCAAGTATCCACAATGGAGGATG TAAACCAGCGCTGAAGGAACCAAGTTTGAGTAAAGACTGCTCCAGTTTAA ACATCAAGTTCGAGAAAGTTCTCCTTCCACCTGTAAGTTCTTTCAGTAAA GTCAATTATATTTACAGGTATTTTCTCggcaaactattttcaaaaggatT AATAACATACAGAAGAATATATTGCAATTCAGAAACAGGATTACTATTTG TTTTTTTACCATAATTTACCATCCTACAATTATCATATTCCATATAACTT TACATTCACTTTTCAGGGCATTTTGGTTGAAGAGATATGTGAAGAGCTAC GTTACTCCGACGTTTTGCAAGACCCTCTTCTCAAACGTGAAATCATCTTG GAGTGTCAACGCTTCACCAGCGATGCAAATCAAAACGAACTGATCGTGTC TGTGTACGCTAAAGATAGAGCAGTTGATGTGTCTGTTGTTCTCGCAGAGT TTTATAAATACGAAACAAGACGCGGATCAGTGTTGCATAAGTTGAACAGA ACAACCACCAAAGTCTTCGTTCGGAGACACACTCTTGTCAAATTTCGACC ACCAGACAGTACGTTTATTTCTCATTCATTTGTTCCTACATTCATACATT CATTCGTTCCTACATTCATTAATTCATTTGTTCctacattcattcattca ttcattcattcattcattcgttcctacattcatttattcattcgttccaa cattcattcatattcaTTCGTTCctaaattcattcattcattcgttccta cattcattcattcattcgttccTACATTCATACATTCATTCGGTCctcca ttcattcattcattcgttccTGCATTCATACATCCACTCAATCTCTTCCC GCCTCATTTTTATTCATACAAATGCAGGTTCATCAACCTCTCTTTCTTGT GTTTACTTTTTAGGGCTGAACTTGTTGGTACCCATCTTGACAGGATTGGT GGTGATCTCATTAATGATTTTgtttggtgtttgtgtttattACAACATCA GACGTCGAAGTCAACAAGCTCTTAATTCCGAGGTATTTTTTACGCAAAAA CAAAACGAATTTCCCACCAAAGGACAATTTTCTACCAAAGACCATAAACC GTGCAAATCTTTGGACCATTCAGAAAAAGACGAACATGAAGATAAATCTA ATAGatatcattataaaaaacctttTGACAAAGGTGTACCCTCGTCCAGT AGGTTATCGACCATCAATGAGTTTGTACCGGATAAACTGTACATGTCTGA TACTAATGATAAGTTTAGTCATTGCTGACGACTGAATGAGATGCAATTGA GATAACGAGAATGGAGAAGAGAGCCGAGCAGACTGGCTAGTTGTCGCTGT ACCAAACTCGAGActtcttttaaaaatgtataTATAGTACACATaccaaa aacgaaaaatatgtttttaaataaagcgaaaaaagaATTCTGTTTTATAA TACAGTATCTTCCTCCGGTTTCTTTGAAATTAACGAGAAAATGGTCTTAC GAGACTGCTGGTTAAAGAGGAAAATAGTTGCCTGTTTTGGAGTCAGTCAT CACTCATTGGGAATGCAGGGTTGGTGCGACTCCTTTATGACCTCTGAGCT AGGTCGTATAATTTTCCTGTGGTCATGGTAACATTGCCAACTTGGAGTAT GACTATGAAACAGAAAAACTTGAAAGGAAATTCAAGCCAAACTGTAAATA ATGTACAAAAGTATGAGCACCATTGGTGCTGATGGTCACGCAGTAAAAAT ATTATGGGACAAaatgaataaatgaaaaaaattacttgAATGAATGGCTG CATTTagaatttaaatgaaaattaatcCCACAACACAAAATGCAgtattt ggttgttttttttatacgaaatttattttgtttatctgtctaaaggtttg ttttttactgtttttgtttaccttgtgaaattgaaagtgaacaGCAAAGT CATAAATAAAATTTATCTTCTGTACTGTTTTCAGATTCacgatattcatg acgtaatgttatgtTATGTTGTTGACCCCGGTTATTGCCAGTAGTGACAA ATTTTATACGACTtttttttgtctagtttaaatttgccactactggctaa aaccggggtatttctgTTTTTTAATGTGTCGCATTAATTTTCATTGTCTT GTctaattttcaatattattgttgttttttttcattttgtcaatTTAAAA GAGAGTTTTATTACTATACGCACTTAGATTTAaacgtttttaagtttttt aagcctatatttttgtttatatctgtcttatgtatcttttttttttcaaa gtattgTCAATTCTTTCTGATACTGAAAGTGATTACGCAAATTGGATTTC TTGAAGCTCATAAAAGATGAATGTTTGAAATATGCGTCCTCTGAATTTGC CAAAGAGATTGAGGGAATTAAACTAGGTAGCTATTTCTAgttatttcatt cattcattcttaGGTGATCACAGCTCGTGCTGTAGTGGTTTCCAAGACGA GGGTTATGGGAATAACTGGACCTGTCTGTTCGCTTTGATTGAAGTTTATT TGGCCATTCGGTTTGTTAGGCATCAAACCCTTAAAACTAATGTTAACATG GGTAGGTTTGAATGGAAATTCAGGTGTTCAGTGGTGTGTCGATTTTGTCT ATTCGTCTCTGTATTCGTTGTTATCAGTAATTGACGAGTTTTGTCGTCGT TATGGCGACAGAACGAAAGATTGACGAAATTGATGCAAAAGGTGCATTTT TTTAGTTGTATGtagatattttttaagtttagttttttttgtcatcagta tcagttttattttttctttgcacattgtaaattttacttttttatacaAG AAAAACTTTTCTGGTTCTAATTTCTTTGTCTTTCCAACCTTGAATAATAG AAATGACATGGGCGTCTTGATGGTTTGAAGTGCGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007560TCONS_00007560Clytia hemisphaericatranscript
TCONS_00007561TCONS_00007561Clytia hemisphaericatranscript
TCONS_00007562TCONS_00007562Clytia hemisphaericatranscript
TCONS_00007563TCONS_00007563Clytia hemisphaericatranscript
TCONS_00007564TCONS_00007564Clytia hemisphaericatranscript
TCONS_00007565TCONS_00007565Clytia hemisphaericatranscript
TCONS_00007566TCONS_00007566Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007562-proteinTCONS_00007562-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:189544..199578 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
JAG2protein jagged-2 isoform a precursor Homo Sapiens
JAG1protein jagged-1 precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.38 0.25 0.29 0.08 3.07 3.61 6.65 6.52 4.18 4.61 7.56 5 7.87 7.52 6.62 11.77 7.67 8.08 8.04 8.13 7.18 5.68 1.99 3.22 32.27 24.52 1.21 0.94 0.88 0.53