XLOC_003656 (gene) - C. hemisphaerica

Overview
NameXLOC_003656
Unique NameXLOC_003656
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000067:222600..231437+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003656 ID=XLOC_003656|Name=XLOC_003656|organism=Clytia hemisphaerica|type=gene|length=8838bp|location=Sequence derived from alignment at sc0000067:222600..231437+ (Clytia hemisphaerica)
TATCATCCTGTGGTTCTctcttcaaaaatcttttttacctTCCAGTTCCA
ATTGAGATCATTGACAAAGATGACGACATGGTAAACCTTCGCACTTCGTC
ACCACAAGTGGAAAATTAAGCTAAATCAGATTTCCAATATATGGTAACTG
ATCAAATTTGGTCACTGTTAAGAGGCATCTAGGCGACTAGGggataacac
tgtgaaaatggGTATTTTTATGGCATGATCGTATGGTTTCatattatttt
gtttaaaatttggaGAGCTTTTCAATCAGTGTCTATTTGCTATAATCTGT
TGATAAACCGTTCTCTACAATTACAGAACACCCTAAGTATTCGTTACATT
ATATGCTCTTTATAATCtctgtttttgatttttgttgatttgtCTTCCAG
TCGGATACAATGTTCTTCTTGGTCTTCTAAATTTTGACGACTATCATGGG
GCTGAGTCATCAATAAACATGGATGTTACGAAACAATGATTCGCAACCGC
CTGTATGTGGATTCTCGAGgtaaattaattttattttttcatatttttcg
tTATGAAAGCTTGGTACTACTATTTATGAATAAGTAATACTGCCTTTAAC
GTAGCGTTATGATAAGTCAACTTTTATGGCCGTGAGTCGAGAGTCGGGAC
TGTAAGAAATATCTTCAATGTGCAAGTCCTCTCTTTAAACAAATCGACTG
CAAACAAACTGCACtgttttttaattcattttagATTTTAGGTTTGCCAA
CAAAAGGTACGTACGGTCAAAAATTGGCTTCAAATACCCTTAATGTCCTA
TTTGGTCTTTTTGGCTAAAAATCATGTTTTTCTTTAGACGATATTATCGT
CTGtcacagtgatagtaaaggcggaaaAATATCgtggtatggcgttatgg
cggtatacggaaaataAATCGGCGGgagactggcaaactctaccgactgt
aaactcttttcggcaaaaaacccgtttgcgatctttcttcggctttggac
ttaattcttagatagtgatttgtcttagactatagcatagtctagttTTT
CTTGGACTGAAATATCTAGGCTTGTACAAATCTTAAATCCCACATTTAGG
CTCCAAATCTACTAGGGAATTGGTGTTGAAGATTTCATGGTGCTAAtata
aacaacaacaaaaattacgTAAAAAATTCTAGGGGTGcagtttttctgaa
aagaagGGCGTGTATTTAACCtaattaatactttctttatttttagatcT
GCACTAATATGAATGCCAGACATTGTTATGCGATGTTTAAGGGATGTTAT
CCTGGGTTTTCGGGTCAGATCAGAATGAAATAAAAGGTTTGGTAATTGTT
TCCATATCTATCTAAAATTACCAATATAAGGTAATTCTACAGTAAATGGT
CTCTAAAAGCTCCTTGTTAGATATTTTGAATAGATATCTGGCCGAGGGAA
GTTGGCGGGATGTTCCATTCGGTAACTGCGAGGTTCAAACATCCTCTCTA
AATCTTTAGTAAGATTTTTCTGTCTGTAGCGTAGCCTGTCGTCGCTTATT
ACGTTTTGTATTTTCCCCGTTTTTTCATTCTATCAAGTTGCTGGAAATGA
Ctaatggttttgtttttacataagtgttcccgtttcatatcagacacata
tttcatatcgggacagtgtcttcctattgttatgttatgctgatataagc
aaaaaatgtttttcttttcctctttctgatcaatcttgctccacatcctt
gTCAATCCAATGCGAAAAAGCTTGGAAATTagaattgacgagtaagcaaa
cgatatcactcttatttaagaacaaaacctttaacttgtGAAAGCTCAAT
TGcgtaaaaatgtaaatataaaagttaatgaTAGACTCTATTTAACGCAG
GTATCTTTAGCTGGTTATATATGCTTTTCTTAAAAAGTAGTTAAAACGGT
AGACTTGTTTGCGGTTAAAAAACTTTCGCAGGGAAAGCTCCCTtttctga
atttaaaaaatatatccaaGAATATTTTGCACCGTTTGAAAGAGAGCAAT
AAAGGTCTTGAAAAAGTAGTGTAGCTAAACTTTTGCTTTAAACTAAGAGG
ACGAGGTAAAATCTGCAATAATAACGTGAAAGGTATTTGATGAACACTAG
AACCTTACTATTGCCTTATTTAGTAAAGATTTTATTATATTGTGTCggtt
ttcttttgtattttctatcaaaatctGATGTGATATGTCAATCAAAGAAT
TTTATCTTTATATAGTACTGACCAGAAACACAACCAAAATATACAAAAGA
GTTTCGTAGGGAAAACTCCCTTATCGCTTACAAAATGGTACAACTTGGTC
ACGTGAACACGCCTGTCAGTAACTCGGTGAGAATTATTTAACGAGATCAA
AACAGTACTCAAACCATGAAAAAAGTCTTGTTTTTCAGAAACGAGGGcga
attttattgtttactgCTGAAGTATTCATTGCGGCTTCTCAAAGCCTTAG
TCTCTTTCCTTTAGAATAATTTTGATAATAAATCAGTTGTGGCTTGGATG
GGATAATCCGGGAAAAGGAGAAAATTCTAATATAGAAAGCTGCTAATCTG
TTATGGGGGCGATCAGTTTCAATCGGATGTTATAAGCCAAATACTAAAAT
GAATTGACCTCTATGTAAAATTTAATAttgcatacacgctttttttataa
gaatggtgtaaatccatttcatcatggatattcttagcctggatatccag
accgtaaactatttcaccgtctagtttttttataatcttgtctcaggttt
acggtctggttcaaGTAACTCGTCTACAGGGATANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtatcagacttttttagttgcaccagactctataattttagaaactt
tgtatgttgaggtaagagtgtttttttctaaaattttgagtctggatacc
caggctaggatattcttaacttttttgggaaaatcatcctaaaatattct
taccgcattcttaggttaggatcctaattcagactaggtTTAACTTTTAG
TACATAcgcctcaagcataaaatggcatttttgtgaaaggagtgagcctt
acttgagggtaattgacaatttatgaTTGGAAACGCTCTAAAAATTCTTA
GCTTGTGTAGCAGaattccatgatgatgatattcttagcattattcttaa
ttttttggccattttcatcatggtcattcttataaagtgtattcttataa
taaaaaagcgtgtagttgtAATATCTTTGGAGAAGTCGATGTCATCCCTG
AAGCTTTTGCCGACGCGATAATCTctcaaaattatttgtttttggtttAG
CGACGAAAGTAGAAAATATTCTTTCGTGTGCTCTAAGCTGCGAAGCTCGA
TTTTTCATCAGCCGATCAGagagaagaaaaacattcgatttttgtgTTTG
CTTTTCTTGTGTGTAAAAATATATTCGATATTGTGCTACGCGCCACTTTT
CAATGGTTCAAAGCGTTAACGAGGCCCTCAAATGTTCACTCTCGATCAGA
GAGATGCATTCGCGGGGCATTCGAGACTAGCGTCATAATCACGCTAGGGA
GTCGGGGATTCGTAAGCAGTGGGTGTTAAATAGGAATTATAAAAAAGCAA
CATATCCTCTATTCCTGTATTTCAACCTGTCATTAAATTaagcagtatag
acctaactcttcatacaaaaattacgggaaacgcatatttggactttgaa
ccctatgctgcactcaagcacttgagccaaaatcccgcaaaggcggNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgat
gtttgtaagtgcactttatagttttgattcccattgaagaatcatattct
ggttttcatgttattagatgctgttttagagctttaggtctacactgtta
AGATAGGTGTATGTTTGAAAATTCCTGCTGCATAAGCATacgtatttttt
tatttaagaacaAGCATAAGGCATGGATGTGATGGGCAAAGTATTTTAAT
CAAGCCTTTGTGAACTCTAAAActtttaggaaattgcacaaaacttgtga
aataagaacatctttaggcttcaaaatgttcaaactcaaaaagtaaagaa
catGAGAAATTAAGAACGTCCGAAGGCTATTTTTGACGCGGTGCTTATAA
CAATTTATGATTATGTATTATTTCTATTGTGTGCTGTCGTTTTTTGGAAT
TTCCCTTTTAATGTCAAGGGTTATTTACCATCGATCTtttatgttttcaa
aaaatgaaaggtGAACGAGACACTCATTTCTAAAATCGCTGCCGAGAGGA
AAGGAGCTTGAAAGCATCTTtctttaacaatatttttactttaatcAAGA
AACTTATATCACAAATTAAGAGGATTTGTAGATTATAATCATGTCTTTCG
GCTGCGGTTGCGACACAAGAGCGCCCTTGGATAAGTCCATAGTGAACact
tttttcctgatttttgtcttGTTTACTTGTTTGGTCGCAGCAAAACCGTC
TGGTGTAATCATAAACAATTCTAATAAGCATAGTACGAAACAGACAGGAC
CTTGGAAAGACGGAAGGTGTATGATTGGGAAAGATGGCAGACCAGAGTTT
TACACAAAACAAGGCCATCAACCTTGTGTGTTGAACGATGGATCACATAA
TTGTCCATTGACGGAAATGAAGACCATGAATACTGAGTACCCTCACTGTT
TCATCTGTTGTTGGAGCAAGATAGCAGGTAAGGCCGTGAGCAATCACTTT
GATGTCTTTGTATTTCATTACAGTCTAGTGTTATCTATATGACCGCCGAC
ATGTTACGTATATCTGTACCTTTTTCAATCTAAATCAAAATTAGGTTACC
TTGGAAATTGATTGAATTTCTATGTGTATTAACTTTACCATCCCTTCTTT
ATCTTAAAAGAGCTTTTCTTTGTATGTTGATAATGCTTCGAGGAAATGGT
TTTCTAGTTGTTCACTTAAACCAGAGacctgttttgtttgttttgaagag
AGTTGATTTTGTAAGTTGATGATGTTTCTCGTGTTACACTTAcgccaaaa
gttaaaaaataaggAGATAACCCCGATCGAGACCCCATAGCACTTAAACT
ATTCTttgaaaaaacctttgaaaataaaacctgTTTTTTTACCCCATAAA
GTCGGTGGGGATGTTTTTAcagatttattttcaattttgaagaaatagTT
ACgatcccaggggggggggggggtttttttttaaaatttaaaaaaagggg
gggggggtttttttaatttttttttagatttttgaaaaaagggggggggg
gtttttttaatttttttttttaaattttttttttaattttgaaaaaaatt
gggcggccccggggggggggggggggtggggtaCTCAAAGTAATTAATCA
GTTTTGGgcaacattttggaaaaaatttaccttttttatCTTAATATGGA
CGagagttttcaagaaaatgcaagGGTCGATTTTATGTCCAATGCTCACC
TGCTTCTTAACTGCATTATTTTATTTCTGCTGGCTAAAAAATTCACCGGT
CACTGAGAGAGGACTTTATTTTCTAATCTTATATCTCGTAATGTAATTTC
ACAAATATTTTTCCTTAGAAACAAAATGTCCAACGTTACCACAGACGACC
ACGCCACCCGCCTTAAATGTCACGAAGCAGGAGACGAGAGGAGAAGAGCA
AACGTCTCCTGAACAGACTGCACCTGGATGTAAAAAAGACGTCCTCTTCA
CAGCTGGTGTATCATTTCTGATACTCTTCTTATGTTCACTTGCCCAATTC
AAATACCATCAGAATCAACGTCTCTCTTTAGTCAAAGAGAATGATAATTT
GAAAGAAACATTGACAAATATAATTCCTGGTAAGATTCAAAGTACAATAA
TTACAGTACAACCTCTCCAAGTGTTCCGACCGAGAAAAAGGTTACCAATt
actgtaaatatttttcattttagaaaatccCGTCCAAGACCATTTTCTTG
GAGAAAACGAGCCAATCAGGAATGACGTAGCAGCCGGCGATTATGACGTC
AACCAAGGCCTGACGGACGAGCATGTTGACGTACCTTCAGGGACGAAGAA
GTCGTTTCATTTTGATACGAATGATGTTGAAGAAGGAGAAAATCAAAACG
ATGAAGGAATCGGCTCCAGTGAAGCTTCAAGTAGAGAATCCATTTGCTGA
CAAATGAAATGGACGAAAAATGAAACACAAATATGAAAGCAAAAGAACGA
AAGTGAAATGAATTTCTTATGGTTGCGGCATCAATCAAATCTCCAACTAA
GACCtagtccaggagctggagctcaactactttttgcctttactaattct
gatgggggaaaaagtagagtcctatcgcagcgccatcattcaaatcagaa
agcgaagatagtatacggcagactTTCTGACTAACTAAGACCGGAAAGAT
GACTACCTGCATTACATTCTTCAACGCCCTTCAGAAGCACGCCCGGGCAA
ATATACAAAgacattcattcattcattcaagtTAGTTTTGGGAAATGTAG
CATTGTGAATTCAAGAACACTGTATTATAATCGAATTTCAACGAGAtaag
tatttcaatttttttaccatATGACTAAATTTTATTAGAGACAAGGTTGG
TCCCAGGAAgacttgatgattttttttgggaaaGTTTTCGAAAGATCCTA
GAGAGTGGTAAATTTAAACCAAATTTAACTTTGGGACTTCTTGTTCATAA
CCCCTACCCACTACTACccaactttcctttttttttggcATCAAACTTTC
CTGACTCCTGACTAGCAAAAGTTAAGTAtgtatattttctattttttaac
aaattttatttaattagtttttttctatccaaataataattttattaaat
ttctgACAGGTTAcattttaacacccctgtctcagtgatcaGGTTGGAAT
GGATCGTGGAGGTGGATTTTTTATGGAAGAGGATCCCACCAAGTCTGTGA
TAAAGGGTTGTTCTCGGACACACCTCCTCTTCTCCCAGTAATTTCCAAAG
GGACAATCCCCTTTGTACCTCCCCCTCTAACGTTCGTGATGACTCATTCT
CCTCCCATTAGTTTTGAATTATGTAGTTTGTTTATAAGAAGCAATAATGT
GTTAATGAATTATGTTTCTTATAAATTAAAACTTATTAAAGAAAGGGGGT
TCCCCTGTGATGTTATGATGGTTTTTTTTTACTCTCTCGTTATGATATAG
AGAAATAAGAGTATAATCAATCATTTGAGACGTTGAACTTTAGATAGTAC
ATTGACATGTTGTTAAATTTTCTATTCaatatttgataatattttgatat
aatttttgaaaaagattaaaATATGAAAGATAATCACG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006401TCONS_00006401Clytia hemisphaericatranscript
TCONS_00006402TCONS_00006402Clytia hemisphaericatranscript
TCONS_00006403TCONS_00006403Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006402-proteinTCONS_00006402-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:222600..231437 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18	1.14	1.49	1.79	8.13	6.55	15.91	21.35	8.07	35.9	15.58	6.08	30.24	29.23	23.38	28.73	10.37	9.85	21.5	31.04	4.63	4.56	7.33	9.41	29.78	31.68	38.58	50.5	29.05	23.04