XLOC_003353 (gene) - C. hemisphaerica

Overview
NameXLOC_003353
Unique NameXLOC_003353
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000061:993413..999834+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003353 ID=XLOC_003353|Name=XLOC_003353|organism=Clytia hemisphaerica|type=gene|length=6422bp|location=Sequence derived from alignment at sc0000061:993413..999834+ (Clytia hemisphaerica)
CGTTAAGCGTGAAAGCAGAGATGCTTGTGATATACACCAGCATCAATTTA TCGGTGACAAATATTATAGAGATGGAATGGAAGTTCTCCAGACTCCTACT TTGAGTGATTCTGATATCAATGGGAAATACGAGCAAGAGCCTCCTGAACA ACAAACTACCAAATATAACCTTAGAGATGAATTTTCTCCAAAAGTCGCAT GCTGCAAACCAGAAAAATCTTCACACTTGAAAGACGATCATGTTTCCATC AAAAGCCATTGCAAAACGAAGTATTCATTGATAAAAAACAATACACACGA TCTTAATGAGAATTTACCAAGACAGACCAGTGATTCTCCAGATTCTTCAA TCGAAACTTCAATAACACCACAAGACAGTGGAGATACAGTCAAAAATCTG AGAATGATCACACTTAATCTGAAGATAAGTAAGGACGATCATGATAGTGT CGTTTTACCTGACTACATTAGAAAGTCACCAGATCCTCAAAACCGACCTG CCATATCATATAAAGTCTCTGGTGAAAATTTTCATGAGGAATTATTCGTT CTTTACGATTGTCGTGAAGTTAACAACAATGTTAGTGGTAACGAGTGTCA TGATAGCTTTGACGATGATAGCTTTGGTAATTCACCAAAAGATAGCGAAA ATCATCAAGGTGCAGAACCATCAAGTAAAGATAAAGAAACTGACAAACAT CCTTCTGAAAGTCAGCATGACGAGTCACCAAAAGGTTCGCTCAAAAATGG AAATTCCCTATTTGACACTACCCAGAACTGCAAAACGACTTTAGAGGGAG ATCTCCAGGATAATGTAGACGGATTGCAGGAGCATTCCCTGAGTAATAAT GGTCGATTTTCTGGTGATTTTGTGGTAGCCATATCAGATCTAGATATCGC ATCTGATGAAAGTATTTCTTCAGATAACAACAATAACACTGATTCCCATC CACTAGACGTAGAAAACTCTTCTAAAAATGTACATCCACATGAAGGTGTT GAACGTGAAAACCTCCCTTTCGAAgattgtactttttgttttcttcaaac tttaTCCGAAAGCAAGATGGGTGGATTTACATGCTTAAATGAAATCGATG GAAAAGAAAATCGTGGTCAAACTGGATctgttaaaaacaaaacattcatN TGGAAAAGAAAATCGCGGTCAAACTGGATCtgttaaaaataaaacattca cCAGTGATATCGATCTCAGTGAATCTGACCACTCCAGCAGTTCAAAATTC ACCGACAGTGAGAGCTTGTTAAGAACGTTGAATGCacaaatagaaaattt gaatacaGCTCAAAAGACGTTGCAAAATGTCGAGAATGCAAAGAGAGATA TAGATGAGTTTACCAAGCTATGTCGAGAGTCCTTATCAAAGATGAACAAA ACTACAGAAGAGAATCCGTCTGAAAGAATAAGCAAAGTTGGGGAAGATAG TTCAAACACTGATGGAATTGTAAAGACGGACAAGCAGCAACAAATCGTTC AACAGAGAAATGCTGAAACTGAAATAAATCAAAGCATTTCAAATCAAGTT GTTAAGATAGATTCGACTTCAAAAGATAGCAATTCGGAAGCAGAAGTTAA CAACTTTCAACTACGAAATAGCCAATTTGAACCAAATCAAAACGATCCTC ATTATGGTAGCGAAATTTATTCCATTTCAAGAGATACCATTACAGAAGAT ATGGAAACTAAAGCAAGATCAGCATTGATACCAGTATCTTACGAGTCTTT ACCATCGATGTATAGGGACGATGATCTCTTGGGACGTGACGAAAATAATA TTGGAAAAACAGAACCTTATCCAGAATTTAATACAACCAATTCTGAGGAA AATCTAAAAGCGAAAAATCCATTCCAGAAGAGCAGTTCTTTTGATGTATT GAGTTCTGAGACAGACAATCCAACAGATTTATTCAACCTTCGGAAAAGCA ACTCACTAGATTTATTAAATACCGACAAAAGCAGTTCACTGGATTTGTTT AGTAAGGAAGATGCGTTCGATTCTACTTATGACTCATTGAAGAACAATCC CTTCCAGAAAGATATGTTTGATAAATATTTGGAACAATTCGATCCATCTG TAATCACCAGTAATGGAGTTACCATGAATGATGAGGATACTAATGATGAT TTGGACGATATGACATTCTCACATGGCGATGGTTTAGATGATGATTGTCT TGAAATGTTGCCAGATGATTCTCAATATGAACCAATCATTGAAAACATTG GCAACGATCTTTCTAGACCAGAAGAAACTGAAGATTTCAATACCAAGAAC CATGTTGGTAATGTTGAAGAAGATGATGGAATCAACGAAGATTCTTCTCT TAATCAAAGAAAAACAGCTgaggatgaaattttcaatcatcaatcaaata atgtGAACCATGTTTGGAATGCAGAAGAAGCTGATGGAATCGACATCTTT GGCAACGGAGATTCTTCTGTTAAACAAGGAGAAACAACCACAGATGAATA TTCAAATCACGAGGAAACAGCCAAGGATGGAAATTCAAATCAAGAGGAAA CAGCTAGGGATGAAACTTTCAATCGACTATCAACAAATGAGGATCTTGCT GGTATTTTAAAAGAAACTGGTGGAATGAACACCTCCGGTAATGAATATTT TACAATGAAAAGTGGTAGAACTTTTAGGAATCAAGGAATAACAAACGATA TCAGAGCTGATCAAAATCAACGGGACATTTTTGGCATGAATGATGAATAT TCATTTACCAAAAAAACCACAGACTATAATCATCTTCGTTTAGATCTCAA ATCACCGCATAGTTTAACTGAAGATTTTCCAACCccaaaatatgattctt caatttcTCCAAATACTGAATGCTCGAAATCGATCGTCACTTCAACCGTC ACTGATTGCATTAGTGAGAAATTGTTTATTGATCAAGATGAAAATTTCTC TAACACTTTCCATACAACATGTTCAGAATCGGTGGATACTGTTTCAAGTC AACCAACTGATGATTATATAATTCCTCCCAACATAATTACCAAATCCTCG CATCTTTACcccaaaattggtcaaaactcGAGCAAACAGATTGATGATTC TCTAAATTCTTCCAACATTATTACATCAAAACATGGTTCCAATACGCTGT TAGCTTCATCAATTCTTGGTAACAATCAACCCCTTCAAAATCCAAACTCA GAAGACTCAAAACCGGATCTGCAAGTATCTACCAATCACAGAACAGATCT GCAAATATCCAACAATCACAGAGAAGATCTGCAAATATCCACCAATCACA GAGCAGATCTCCAAGAATCCACCAATCACAAAACAGATCTCCAAGAATCC ACCAATCACAATGCAGATCTTCAAGAATCCACCAATCACAGAGCAGATCT GCAAGAATCCACTAGTCACAAAGCAGACCTCCAAATATTCACCAATCACA GAGCAGATCTGAAAAGATCCACCAATCACAAATCACTCAATGATAAAGTT GATATCACAAACGAGAGACTTCAAAACGCATTTCGATACATGGACcgtta tttcaaagaaaaaggaaTCCAAGATAAATTATTGAATCCTGAAATCAGAA TCGAAGAATCGGCTGCTGACACTCAAACACCAGATTCATCGCATCGACCA TCATTGGTTAAAAGCACCAAAACAGCCTTCAACACAATTACAAAAATTAA TGAATCATTGACCAAAACAAACCCGTTCGAAGACCAATCTGATTCTTCAA ATGAAGCTAATACgaacaaaaatttaaagtacGATGCATTTGAAATCGAT ATAACAAGCCGTCTTCAACATAGTAGCAAGGAAGTGTCTGGCAATAACTA TCGGCGCTTAAATTTCGACACCAGAAAAAATAGAGACACCTTTGATGACA TCGCTGATGTTGCCAGTGTCCCAAACCATGGAAAACCCGATGAGTCATCT GACAAAGCGATTGAAGAGAACCGATGTACCAGATCTGTGACCAACAACAA ATTCGATCAACAAATGATTAACACGACagtaagttttgattttttgtttg gtTTCCCATGGAAGCCTTAGAACGAGCTTTTTGTTATAGGTTAGCCTTAC TTATTATATAACATGTAGTTCTACCTGTTTGCTTTCAAACGAATCGTAGC TGATCAAGCAGAACAATTATATCACGTAAAAAAGATTAAGATTAGGCCTG ATTAGGTTGGTGTTGGAGAGtcagattttaggtttttgaatgAGATATAT ACCCAATCTAACCATCCGCAGTCAACTAAAAACAACAGCACATCTCAGCA GAACCTTCTCCATAGGCGAAGCGAGACACCCTGCAAAAtgtatgagggag tgcagacgtttatgacatattaattatcttttgataaaacaaagacaata attacagtgtcgtaaaaaccgctctctcTATGCTCGCTACGCCTATGTCT CCAAACATGCAGACCTTTCAcaattccatcttctttctttccATTCAATT AGACGTACAAAGATTATGGCACACCTTTAATCATTGATAATGGTTCAGGG ATGATCAAGATCGGACTGGCAAATAAAGAATCTCCAAATTATATCCCAAA CATTGTTGGCACTGAGAATTATCAGGTATTTCAGTGTCTCATATTTTTAA ATACAGCCCTGTTTCAGTGACACCaataaatttgatgaaaattaaaaagg aaTAAAATAGCATGTCACCCCTTGTTTGAAACGTGTggttttcaaataat aaaactATCATTAaagatttggcggatttcaggtAAATGCGCTAAATCCG GCAacatttcttcctttaaggtacttacttctttttttctatttcagaaA GTGATGGGTGGTAGTACTGAAGATCCTTCATCCAACGAACGAATGGTTGG ATGGAAAGCAGACCAGTATCGTGGTATACTAAAGTTACGGTATCCGATGC AAAATGGTGTCATTGATGATTGGGATGCCATGATTGATGTAAGGAAAGTT CCATTTAATTTGAAgtcccgaaggggctagagatgaatctttaacctttt gtcaagcaagaaaaagcgaAGCCTTGCTTTTTACACGGGCCATGTGCTCT GGAAGTTAAATAAGTAGTTTAATTTTCCATCCCGAAGTTTCGGGGCTTTC CagctttgaaatcaatgcaATTTTCTCTTCCATCTTCGAAATAACTCTAA GAAACTTAACATGTTTCCTACAAACTACGAGCATACTTGTAGTAGCGGAA GAATCACGAGCTGTCATCTTGaagatgaaattatttttttaaattcactt gagacagtaaaggcggaggagaattgctcaaaaattaTCATTAACACCTT TCGATTTACCGTAGCCCTTCACTACCGCAAATTTGACTTTTCTGATTAAT ATCGTACGTTTTCTTTCACTCATTTACGAAGAAACTACAGGCTTGGGGAc atgagaagtttttttcgcgttggtgcaatggaACATGCTTCATCCCACAA ACCTGAAatgctttctcgtgtctccaccccatttttctttcaataacatt tgtgcttctctcacttttgtccctaggacaatggagcaaaatttattcga atcaattttgctccattgtcccagaaacaaaatcagcgtgtcttttgggt acttccctcactttttgtcccatgaaacaagaaaagaaaccatgagacac gcacttctttttttttattgtgttGGTGGCATGGAGCATGTTgaattgca ccaacgcgaaaaaaagctatttttcatttttaggtaTGGACTTATTCTAT TGAGGAGCAACTGGAAATTAACTCTTCTGATCACCCCATCTTGATAACAG AGAATGTATTATCTCCCAAACATCATCGAGAACGTATGATGGAGATAATG ATGGAAACATTTGAAATACCTGCGTACTACTCTACTCAACAAGGTGTCAT GACACTTTATAGTGCTGGTCGAGTTTCAGGTAAGATTTCAATATATTGTC GCCAATATGCGAAAAAACTAATCGGCGGTAGAAACTCTTACCGGCTGTAA actttttcggcaaaaaaaaaaccgcttgtgaattttcttcggcttcgGGC TGATTTCTTAGATAGTTATTTGTCTTAGATGATAGCATAGTCTATGTTTA TATTGCTAATAAGAAATTTGTGTTCGACTTTTTAGGAATCGTTCTCGACA GTGGAGATACATTATCACAAATCGTTCCTGTTTATGAGGGGTATGGAATC AAGCATGCAACCGAGGCTATTCAAATTGGTGGGCGTGACGTCACAGATTA TTTACGAACATTAATCACGCGGAAAGGCCGTTCTATGCCGACGTCAGCAG AATTTGAGATCGTGAAAAAGATGAAAGaagaattttgttttgtgaAGAAT CACGAGGAGGATAAGATGAAGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005870TCONS_00005870Clytia hemisphaericatranscript
TCONS_00005871TCONS_00005871Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005871-proteinTCONS_00005871-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:993413..999834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06 1.1 0.77 0.56 0.7 0.59 2.65 2.91 1.06 1.35 1.49 1.23 1.06 1.08 0.15 0.08 1.21 1.3 2.29 2.5 2.2 1.8 0.77 1.09 2.69 3.5 0.12 0.06 0.17 0.22