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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00005871-protein ID=TCONS_00005871-protein|Name=TCONS_00005871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1557bp
VKRESRDACDIHQHQFIGDKYYRDGMEVLQTPTLSDSDINGKYEQEPPEQ
QTTKYNLRDEFSPKVACCKPEKSSHLKDDHVSIKSHCKTKYSLIKNNTHD
LNENLPRQTSDSPDSSIETSITPQDSGDTVKNLRMITLNLKISKDDHDSV
VLPDYIRKSPDPQNRPAISYKVSGENFHEELFVLYDCREVNNNVSGNECH
DSFDDDSFGNSPKDSENHQGAEPSSKDKETDKHPSESQHDESPKGSLKNG
NSLFDTTQNCKTTLEGDLQDNVDGLQEHSLSNNGRFSGDFVVAISDLDIA
SDESISSDNNNNTDSHPLDVENSSKNVHPHEGVERENLPFEDCTFCFLQT
LSESKMGGFTCLNEIDGKENRGQTGSVKNKTFTSDIDLSESDHSSSSKFT
DSESLLRTLNAQIENLNTAQKTLQNVENAKRDIDEFTKLCRESLSKMNKT
TEENPSERISKVGEDSSNTDGIVKTDKQQQIVQQRNAETEINQSISNQVV
KIDSTSKDSNSEAEVNNFQLRNSQFEPNQNDPHYGSEIYSISRDTITEDM
ETKARSALIPVSYESLPSMYRDDDLLGRDENNIGKTEPYPEFNTTNSEEN
LKAKNPFQKSSSFDVLSSETDNPTDLFNLRKSNSLDLLNTDKSSSLDLFS
KEDAFDSTYDSLKNNPFQKDMFDKYLEQFDPSVITSNGVTMNDEDTNDDL
DDMTFSHGDGLDDDCLEMLPDDSQYEPIIENIGNDLSRPEETEDFNTKNH
VGNVEEDDGINEDSSLNQRKTAEDEIFNHQSNNVNHVWNAEEADGIDIFG
NGDSSVKQGETTTDEYSNHEETAKDGNSNQEETARDETFNRLSTNEDLAG
ILKETGGMNTSGNEYFTMKSGRTFRNQGITNDIRADQNQRDIFGMNDEYS
FTKKTTDYNHLRLDLKSPHSLTEDFPTPKYDSSISPNTECSKSIVTSTVT
DCISEKLFIDQDENFSNTFHTTCSESVDTVSSQPTDDYIIPPNIITKSSH
LYPKIGQNSSKQIDDSLNSSNIITSKHGSNTLLASSILGNNQPLQNPNSE
DSKPDLQVSTNHRTDLQISNNHREDLQISTNHRADLQESTNHKTDLQEST
NHNADLQESTNHRADLQESTSHKADLQIFTNHRADLKRSTNHKSLNDKVD
ITNERLQNAFRYMDRYFKEKGIQDKLLNPEIRIEESAADTQTPDSSHRPS
LVKSTKTAFNTITKINESLTKTNPFEDQSDSSNEANTNKNLKYDAFEIDI
TSRLQHSSKEVSGNNYRRLNFDTRKNRDTFDDIADVASVPNHGKPDESSD
KAIEENRCTRSVTNNKFDQQMINTTTYKDYGTPLIIDNGSGMIKIGLANK
ESPNYIPNIVGTENYQKVMGGSTEDPSSNERMVGWKADQYRGILKLRYPM
QNGVIDDWDAMIDVWTYSIEEQLEINSSDHPILITENVLSPKHHRERMME
IMMETFEIPAYYSTQQGVMTLYSAGRVSGIVLDSGDTLSQIVPVYEGYGI
KHATEAIQIGGRDVTDYLRTLITRKGRSMPTSAEFEIVKKMKEEFCFVKN
HEEDKMK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004000 | Actin |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 406..439 |
| None | No IPR available | GENE3D | 3.30.420.40 | | coord: 1494..1524
e-value: 4.1E-9
score: 35.5 |
| None | No IPR available | GENE3D | 3.30.420.40 | | coord: 1329..1493
e-value: 4.9E-50
score: 168.9 |
| None | No IPR available | GENE3D | 3.90.640.10 | | coord: 1525..1557
e-value: 2.2E-8
score: 33.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 201..256 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1038..1076 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 446..471 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1219..1238 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 304..333 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 32..52 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 578..606 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 98..128 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 800..836 |
| None | No IPR available | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | coord: 1334..1510
e-value: 8.0007E-12
score: 64.1471 |
| None | No IPR available | SUPERFAMILY | 53067 | Actin-like ATPase domain | coord: 1332..1482 |
| None | No IPR available | SUPERFAMILY | 53067 | Actin-like ATPase domain | coord: 1475..1552 |
| IPR004000 | Actin family | PRINTS | PR00190 | ACTIN | coord: 1444..1457
score: 56.37
coord: 1390..1412
score: 48.45
coord: 1469..1488
score: 58.05 |
| IPR004000 | Actin family | SMART | SM00268 | actin_3 | coord: 1331..1556
e-value: 1.1E-12
score: 55.3 |
| IPR004000 | Actin family | PFAM | PF00022 | Actin | coord: 1332..1553
e-value: 1.9E-55
score: 188.0 |
Blast
BLAST of TCONS_00005871-protein vs. Swiss-Prot (Human)
Match: ACTY (Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 7.719e-60 Identity = 97/226 (42.92%), Postives = 153/226 (67.70%), Query Frame = 0
Query: 1333 PLIIDNGSGMIKIGLANKESPNY-IPNIVGTENYQKVMGGSTEDPSSNERMVGWKADQYRGILKLRYPMQNGVIDDWDAMIDVWTYSI-EEQLEINSSDHPILITENVLSPKHHRERMMEIMMETFEIPAYYSTQQGVMTLYSAGRVSGIVLDSGDTLSQIVPVYEGYGIKHATEAIQIGGRDVTDYLRTLITRKGRSMPTSAEFEIVKKMKEEFCFVK-NHEEDK 1555
P++IDNGSG+IK G A + P Y PN VG + +VM G+ E + +G KA+++RG+L +RYPM++GV+ DW+ M +W Y ++QL+ S +HP+L+TE L+P +RE+ E+ ETF +PA + + Q V++LY+ GR +G+VLDSGD ++ VP+YEG+ + H+ + I GRDV+ YLR L+ ++G TSAEFE+V+ +KE C++ N ++D+
Sbjct: 11 PVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALE----GDLFIGPKAEEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYLSINPQKDE 232
The following BLAST results are available for this feature:
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