XLOC_001906 (gene) - C. hemisphaerica

Overview
NameXLOC_001906
Unique NameXLOC_001906
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000028:215899..220175+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001906 ID=XLOC_001906|Name=XLOC_001906|organism=Clytia hemisphaerica|type=gene|length=4277bp|location=Sequence derived from alignment at sc0000028:215899..220175+ (Clytia hemisphaerica)
CagcattaaaaaaaacaataccaATTATGGAAGATAAAAAcagagaaaaa
gagcaaaagAAAATCATAGTGGTCGGAGCTGGATTAGTAGGATCATTACA
GGCTTTATATTTCGCACAACGATCATACAACGTACAAGTTTACGAATACA
GGCCTGATCCACGAACCCAGGCTAATGTCGCTGGTCGTAGTATCAATTTA
GCCTTATCCAAGCGTGGTCGGGAAGCGTTAAAAGGGGTTGGTGCCGAGGA
GCATGTTGTTAAGACTGGGATCCCAATGCATTCCCGTATGATTCATTCTC
ACGATGGGAAACAGTCGGCGATTCCTTATGGGAAAAAGCATCAATACATC
CTATCCATCGATCGTAGAGCGTTAAATGAGCATTTAATTAGCTTAGTGGA
GAAACATCCCAATGTTGATTTCCATTTTGATTCGAAATGTGTTGATGCCA
ATATCAAAAACACCGAGGTGACTTTTCAGGATAAGGAAAGTAAAGTGGAT
TCTATTGAGCAAGGAGATTTGATTGTTGGATGTGATGGTTCTTTTTCTGG
CATCAGAAAACAACTCATGAAATTGAACAGAATGAATTATTCTCAGGTAA
AAACCTTATGATGCTTAAAGAGTCCTCCTCACTACCTTATCAATCTTTTT
ACGCCGGTCCTAATTTAGAGCCAAAGCTTTTCAATTTTGAGCCCGGCCTT
AATTGAATTCCGATCCCTTACGCCAGCCCTTATTACACAAGCGACAAATA
ATAACACCGATATGCATCTCCCTGGTTTAGCTTACTAGGGGAAACATGTG
TTATTGTAAGTATCAAACAGTAAaatattttggttatttttaaggTATAT
ATACCACATGGTTACAAAGAAATCGAAATGCCACCAGGATCAGATGGTGA
TTTCATAATGGCTCCCAATTATCTTCACATCTGGCCACGTGGTACATTCA
TGATGATTGCCTTacccaatcaaaacaaaacattcacGTGTACTTTGTTC
ATGCCCTACGCCATttttgatcaaatcaaaaccGAAGAAGACATCATGGC
TTTTTTCGAACGTGAATTCCCTGACTCAATTCCTTTGATTGGCAAAGAGA
AAATCATCTCGGACTACAAGACCAATCCGGTTGGTGATTTAATCAGTGTT
AAATGCTCACCTTACCATTATCAAGATAAATGTGTTATTGTTGGAGATGC
TGCTCATGCAATGGTGCCTTTCTACGGTCAGGGAATGAATTGTGGATTTG
AAGATTGTCTGGTGCTACATCAAATCCTTGATAAACACAATGGTGATTTT
ATGGCTGGTTTGGAAGAATATTCGAGAACAAGAAACCCAGATGCTGAAGC
AATCATTGATCTGGCAATGTATAATTATTTAGAAATGAGGGATCATGTCA
ATTCTAAATTATATGtcttaagaaaatattttgatggttttttgaaTTGG
ATTTTACCAAGGCACTGGATTCCATTGTATACAATGACCACATTCACCAG
AATTCCTTACCATAAAGTTATcgagaaaagtaaaaaacaagATCAAATTG
TCCAGAAACTTATAACTGGTATCAAAGTCCTTAGTTTGATTGGTATCTCT
GTGATTGTTTATCAGAGGAGGGAAAATATTCCACCGTTGGTTAAAGACTT
TTCAGTATTCGCGGCAAATGTTCAGGATACTTTAAAAggtattttttaaa
tgcatattGGATCTTCATTTATGATGCTCACAATTTTTAGCATTTACAAT
ATTTTTACTCTTTCCTAGAAACTAATATGTATGGTAAACTCTAGTAAAat
attaagcagttattggacaaagtcgaatccaatatatgcaaaaatattgg
gcgtgccagaaaagatattggacgaggcTTCGCCGAGTCTAATAACTGCT
TATTATTATCCGGACATTTGTTCAGGTATGCTGCGAAGAACAGCGacaca
ttatttttttaaataccttCTCActccatggaagctatatatttaaaaat
attggacatcaaagaagccaatcaaatgtcgctatttacgcgcgtcggat
aataattttctttatgattAGGTATATTATCTATGAATTATAAAAAAGca
agaaatttgaaatgacTAACTTAGGTGTATTTGAAACACGGTATAATTAA
TTATGACTACGacagaaaaaattacaaaatcgaaaaaacaattttttaaa
cacTAGTAAAAATATTTACGATTTTATATTTGCTGAAATAGATTTTAGGA
TATTTTCGATATCCGCTGTATGAAGTTCAAGTTCGTCTGTATTCATTTTA
CCAGAGTATATCCCTCTATATAGGGTTTGAATCAAGAGTTCATTTGAAAA
GCTGATTCTTCTGCAATACGACATAATCTTTGGTGAGGTCAGCTTTGGTT
CAACTAATTTACTTATGGATAACATTCGAAGCACATTAATAGATTTCTTC
AGGATCTTCATACTCTCTAATGCTGATTGATAGAACATAACTTTAAAAGT
TAATTTCCTGTTACATATCTGCCTCCAAAGTCTATTCAAAATAACATTCG
AATTCGATTCTGTTAACACTTCCATCAATCGTTTTTCCTTCACTGATAGG
ATAGGCATGAATGCATATTCCTTTGTGCTCTGTTGACATCCATTACCATG
TTCATTAAAGGGTGTTGTGCAATTCCAACAAAACCCTTCGTTTGAGCAAA
TACACATCATTACATAGCAACCACCGTTTTTCTCAATGAATTTCCCACAT
CGTGGACAGTGTTTACCACGAACGTTCGTCTTCAAAACACGCCCTGTTGA
ATCAATATTACCGTATTTCACTAACCTTTCAGTAAGCGTATTAAGTTTAG
CATATGTTCGACAGGATAAAGGCCAATGTGTTGTTTTCTTGCAGGTGAAA
CACCATGACCGATGACATTTTCCACATTGGACCTCCAATGTTCTTGACAG
GATCTCCGAAGCTTTAGGAACGTGAGGGATTAATGATTCATCTACAATAA
CAACATGCTTGCAAAAATTATTAGGGCATGATTCtatgtttttagatttc
tgtataAGCTGTTTGGTGTAACCTTTGATATAAACGTTAAACAAATCCCA
AGTTACTTTAGATAGTAAAGTAACAACATCGATAACCGACTCGCATTTAT
AAGCAAGGCATGTAATGTTTTTGGTTGATCTATTGGTGATTTTGGATTTG
AAGTATTCTTCCCAGCATTCATTGCAGAATAAATGTCCACATTTGTTAAG
CGTGGTGGTGTACGTTTCAGAGGAAATCTCGTTGAAACAATTCGAGCATT
CTGTTGCTGTTGGAAACAAGGAGCTGCTGTATTCAGCCTGGTCATAATGG
TAGAAACCTGAATCAATGATAAGTTGTGATTCTGATTTTGTGCtgatttt
ttcatcttcattttttaaaggaATTGTCGGACCTTCAGTATCTCTTGTTG
ATAACCCTGGATAGAACATATCAACAAAATTGTGGAAATACATTGGTTCA
TCAACGGTAAATAATTCGAGCATATCCAGATCAAGGTCTCCATCAAAACC
aagaaatgttactttaaaTGTTGAAATCGATTCTGACGTTGATTGaactt
caaacaaaatctttgaagaCATCGGATCAACTTCATTCATGATGATGAAT
TTTCTTTGCATTGTTTGTCCTTCAACATAGAATTGTCCATACACATCATG
TAAAAGGTTTTGCTCAATACTGTCATTATTAAAAGTAACAATAACTGAAT
TGTCCACGTCAACATTATCTTCTTTATCTGATGATTCTTGGTAAATAGAT
GATACAGGAGCTTCGATCTCAAtgatatgtttttcttttggttCCACTAA
TAGATTGCGGTTGAATTTACGCTTGGCTTTCTTTACCTTAGGGGTTGATT
TGATTTcagaatctttctttaattttaaTTCCATCAAATTCAAATACTGT
TCTTTATATGAATATTCTATACCAAATTCTTCATCATCGGCATTAAATTC
TGATTcctcactttcaaaatattgttcaTTTTCAAATACTTGATGGTCAA
CGTTCTGCCTTAAGGTCATCGAGTTCTTTATACGAGGATCCCAGACTCCT
CCATACCGCCACTTTCCCCAGTTGTATTTCCTGTCTTTATGGTACTTTCT
CTTGAAATTTGATCCTCTGACTTCTGACTCGAGTTTGAACGGATATGTTG
CTGTCATACTTGGTTTTTTGATAATAAATTGGCAATCTGCGTCACTTTCT
CTGTCGCATCTGATATTGTTGGGTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003412TCONS_00003412Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:215899..220175 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.86	12.38	17.52	19.14	61.17	43.26	20.83	19.1	7.56	7.02	5.36	4.65	2.88	1.9	4.13	5.32	4.6	6.52	1.69	2.24	13.15	10.41	14.61	15.07	3.33	2.69	8.18	8.12	13.37	9.34