XLOC_001416 (gene) - C. hemisphaerica

Overview
NameXLOC_001416
Unique NameXLOC_001416
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000021:299567..309007+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001416 ID=XLOC_001416|Name=XLOC_001416|organism=Clytia hemisphaerica|type=gene|length=9441bp|location=Sequence derived from alignment at sc0000021:299567..309007+ (Clytia hemisphaerica)
AAGAAATGTGATCTCAAAACGAAGGTGTAATGGtaggaatctcgattttt
ttaaaacttttctctTTTCCACATTAAGCTATCCCATCTAGATAGTGCTT
ATGGTTTTATTACATTAGTAAGGTCATGTTTTTGCCGAGAGCTCCAAAGT
TGAAAAAACAAGATCACTTTTTCTAAATTACAGCTTTAAAAAATGTGTCA
TTCCATTTTTATCTCAGTttcttaaattgaaaaattgaaagagaaaaaga
gaaaggAAGTCCAGAATgattttttctatctttttaccCCTTTCTCAAAG
AATTCTCATAATATACAtccattttttttcattctgcTGCAGTTGGCCTT
ACGGGATGGCCTTttactatttaaaaaaatatgcttGACAACAAACTAGT
ACCCTACTGTAGTGAGAAAAAGAGTCATCCCACTGGAATTTCATAAAACA
ATTTCACCcatttgaaatatcaaaagGTTGACACAAAGCCATGTTGCAga
tcaactttttcaaagagCCTTAGTAGAACTTTGAAGTCAATGGAACACCC
CACCACTAgaattagaaataaaaattaagaaattgatAAACACTGAGTAA
ACCATAAAGAGAACAAACAACTTTCCTGACTTTCTGTcaagattttttgg
aaatagatAGTCTGTCAGAGGAACTGAACACACCAACTATAGTCTCTTTT
TTTATCAGTTGGGGAATATGCCTTGATCAGGATACAGATAAATAAAATAT
CTGGGTAAACCTTAAGTCCAGGAACTATTAAAAATGGTATCTTCTCAAGT
GTCAAGGACAATGTTGGTTGCGCTATAAAATGCTATAAAATCTTTGCAAG
TAAAGGAGGCAAAATAGAGGTTAGGATTAGATCATCattcatatcaaatt
tttttactgaCTGAACTAACCAAACTCTTATTGCTTCCaaattgtgagtg
ttcaatTAGggttgaattaatttttttaatcaaactttttgatcaaaata
aaaactGCAAACCTTCCCAGGCGGCGTGGCTACAAAGTAATAGGGTCAAG
ATCAGAATCTCGAAAACTTAATTCAGAGGAATGTTAAGagatactctagg
ggctgagttaggtcccgtatgcgcatcggcgtatagtcattttttctttt
gatcaggaacgtatagtccttgaagagtcagaaaacgtgtgtggcgctat
ttggatcaggctcaaatttccataatggcggattttagatttcaaccctt
tttagccctcttgcttgaaaagaaccataatggcggattcaaaattttct
ttcgtcacatgggctcttaggctctgctaggctaagaaaaatattttttg
agcttaaaatcCTGCATATTATacaccaatcgatcagaaattttatgctg
attaagaaaaaggtcagtaagtaagccaatcaaatttttctatctcgagc
tatgaagtactttcgttttcaaaacttagaaaacgtaagtacttcgtatc
tcttgataacgaaattttcagaccatagtTCTGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATTGGtgtataatatgcagggttttaagctcaaaaaatatttttctt
agcctagcagagcctaagagcccatgtgacgaaagaaaattttgaatccg
ccattatgaatttcgaaattcatgtagaaaaaaaaattttcctgaattAT
ATTATTTAAACGGTAGGCAAggccctccgaaaatttcaagtaaattaagt
aagccaatcaaatgttaaagCCACccaaatctggaaccaaaagtagtcat
ttcaaaaaatcgaaatcgaaagtgcttcatatctccagataacaaaattt
tcagatcatgattctgacctttttcttaatcagcataaaatttgtgatcg
attggtatataatatgtctatgtttaaagtcaaaaaaaaatttcttttca
agcaaGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAcgcgttt
tctgactcttcaaggactatactttcatgatcaaaagaaaaaatgactat
acgccgatgcgcatacgggacctaactcagcccctagagtaagaTAGAGA
AACAGCTTTCTCTGATTACTCAAAATTCAACGATCACTTTGATCAATTGA
TTagggtcattaaatgaaagtccagaaaagacggcttgTCATACAAATCG
GTTTCAACTTCTTCGTACGGATGAGAGTAGATCTTGTATTTTTCTATCTT
TGATCTAGAGTTTTCTGGATTTCTGAACCTTTTGGGTGTTTCTAAGTTGG
ACTTGGAGTTGgacaattttgatatttttaaatttgccaaagttgagtTT
CCAACCCACACATGAAGAGTACCCTTGATTCAGAAGCTCTGTACGCTACC
AAAAGACCACAGAAGCCACGGCAGATGTCAGATTTCACAATCTATTTata
gtgtgtattttacagacctatatatattatatatagtcaaagaagtattg
aaccttcaactattcaaaaaatgtaataaacaaaaagagacaaaacaata
ccaacaagaggacacaacaacacaacatgcTCAGGATGAATATTCATAAA
AAGGAAAACAGGTATGTGATATCAAATGATGACAAAAGATCTAAACAATT
TGTACATAATTCTGATGGAATAGAAAAACAGAAATGGGAAAATGGTGTAT
TCTTCGGAAGTATATCTCAAAAAGCAAAAATGCACAGCATGATCTAAATC
GACCAAAAGGAAAGAAGCAACTCAAAgtgagaaaaagtaaaaataaacac
aaataaaagTGACTCAATATGAATcaattaaatatattcaaagaaaacac
aaactctgttcttcagttttcaacctacataggatttcggccattttcGA
AAATATCCTCCCAAATGATATAAACCGGGTAATGTAGGTAGGCCTATCAA
TGACCCTAACTGatcctgaccctaactgatataAACAATTTTCACCCATT
TGGTTCGAAACGCATGAGACAGGACACAGgaggcaggacacaggacgcag
gtcagTGCTGATAGGTCAGCTTTAATTGCtgtaaaagacaaagaaaatgt
ttgaaaaacactgtttgTAATCGTTAGAAATATCATTCTGAATGTATTTT
ATTGGTCTAGAACCTTTTTATAGGTCAAAATCTATCCACATGCTTGCCAC
GTGCTTTTGCATTTTGTGCcatgtataacacggacctgtaatacttgtat
tatacaTTACACATAAATCACGCATGTATAATagcagttatcttttcaat
gttattggCATGTtacatatattatatacaaaatacatgtgttaaaaata
tttatctcatctttaaacagccccctaaaatagctatttcacattTCGCt
atatcatatctcattatatctcctgcatcaccttgggtacaaaaattgac
taaaatagcgtcaaaggtttgtattttattaatatatcaatatttttatt
ccaTATCTcgtatttttcatgaaaataacgtcactattttcatatctcta
aaacacctctcttggagcatttaatgttttcaaaatatataaatctaTAT
CTACTTGCACCATCAGCAtcacgacccacggcatggcccgaacatgtttg
ggcctgttcggaccatgctcgggccacaaaaaagtattattgaatcggcc
cgaacattttgtttgGaccatgttcgggccatgtatttacaattgatacg
gatttgctttacctttcctggtttatcatcatccattgttaaatattttc
attagacaaattcaaagttccaataccagtttgattcacaaagttgtata
acagtacaaaaaacgatccagaaaaattctgcttcgaataggagaagacc
acgagaaaagggaacgtgataaaaagaataaaaagaagaccattatgtaa
gattcaaatcattctttttaataattttcccaacttaattggaaaataga
tgattaacttttatatatgaacaatatatatttgaataaagatgaagatt
tttaaatttgtttgctaaaataaggaatttaaaatataaatattgggtcc
tgaaattacacgcgcgatcgtagcaagttttcaaaaatttggcccgaaca
tggtccgaaactgcgcgggcccgcgcgggccatttttaaaaagtattact
caagaggcccgaacatgttcgggccatgccgtgggtcgttcagcatccta
ttgagcatgaaaaaacattttgttgtaaaCTGATGTACACACCTTGTATT
TTGTGATAACGTCATCATTTACACAATTTaaatgtcattttgtcaatatt
tgggattaaaatcttctaaatagcgtatttattttgtataatatataatt
ttccattgcgtataatgtttttagaaacattttatgAATTATATGTTACA
AGTGTGTTacaattttccggtctgtagtttgtatgacctgcgtcctgtgt
cctgtctcttgcgtttcgaaccaaccgaTTTTCACCCGTACGgatttaat
aacaaaaaatctaCTTTCACCCATAGCCATTCAAAGAAGTCAGCACCATT
CGAATCGAACAGTTTCTTCATGATTcaatttgacattaaaaatgaatgtt
tgtttttcctttttcaccaatagttcaatttttttagaataagaagcaat
ttttttaccaatgtataccAGACGTTACTAATCGATAAAATCGATTATCG
ATTAAAATTGATAGTTAATCGATAATTAATCGATTTATTAAAAAAGATAA
TTGATAGctaaggcggtcatcgaaaaaatgctctgtttgcgtcgcaacag
gtgttaaaaatgcatgcgggcggacgggcggtaAAAAACATTcccaggtt
ttttttaatcacgccaataactcaggggcgggtggtaacgcgatcaaaac
attttttcgatggtcgtcagagcaattgagaaaaaagctatactttaaaa
gaacaaattgcctttcccagatttttttcctcatctccgcaccggaaaat
cagcggaaaatttgatgcgggcgggtgacgcgaatagaacaatttttcga
tgaccgcctaatcaatactcacaattttttagcactcaattgaatagacc
ttttttcaaagaggccaccctgttgaataaattatgtagtccagcagaaa
aacaatgataagaccatgcataattattacaatatgcatgatacagtaat
tatgcatggctctatcattgtttttatggctggactacataattattcaa
caggacgtcctctttgaaaaaaggtctattatcaccatagatttttaatc
gataatatcGATTACAGTGTTAATAATTGATAATATCGATTAACACAGAT
TAACATTGATATAATCGATACCTCGACCctatcgatttttaatcgattat
atataattgatataatagatatcttatatctgatcgatataatcgatact
cacaattttttaggcgccgattatttattaattttcgtttttaatcgata
tttaATCAATTGATTaatataatagacctttttttaaagaggcagccatg
ttgaataattatgtactccagcataaaaacaatgatacagccatgcataa
ttactgtatcatgcatattttaaaaattatgcatggctgtaggtatcatt
gtttttattctggagtacataattattcaacatggttgcctctttaaaaa
aaggtctattatcgattagctattggttttaatcgataatcgattttatc
gattagtaacgtctggtgtatagcaaaagaaattcttaatgcaatgatat
taaattgattcttgtaaaactgtcagaaattGAGTAAAATCAAGATCAAG
TTATAATTTTCTGGAGCTTTACATATAATATGGTGCCGTCATGATGCGGt
taggggccgtcgacattcgactttcgaattttttaacggcatttggccgt
tatggttctgaccccctcccccccctctACGTTAACGGCCATCAAAttct
ctaaagttaaaaaaatgtcaaaaatcaatgaaactctaaattttctcctt
cactttcatcgttgtttcgtcagccatctttaatatcGCTACGGCTTCGC
Tcagtttacatttaaaaaataacggagataattttaaaacttttttccga
aagtcgcgcgaattaattatctccgtagtcataatcaaaagaatagcggc
atttcaaagaaaaaagaccgaccgtctgcgaaattcaagggccgcgAGGA
CCGTCTAAGTCCGTCTAAACAAATGGAACACGAAACATAAACATCgggtc
gtttgttttggttaaaatcattctaaaaaaTAGCTAAGTGAATACTTCAG
GTATGTGACTTTAGCAGATCTTAGTtgataaaaggaggaaaagaaatatg
ggaagtaacatttgtatggaataaacgactcaaaaatcaatattttctgg
tgaaaagaattgatatgtggtgagttgacccctaaagagattttcgacct
tcccttaacggcacatggtcgaccccctcccccccttaacggccaaatgc
cgttaaaaaattcgaaagtcgaatgtcgacggccccttatatcagtagaa
tatcgctaggaaattctcagcaagaagatataggtaccttttcgtataag
TGAGATGTACCCAAAATATGTAAGCCGTAAAAGTTTGTGCATAATCAGGT
GTCACAACACGcaatcaacaacaaaagaaacctattaaTTCAACTtataa
gggcaagagacctgatggcaagccgtttttccattccattgttttcaaga
aactgttttccatctctttacattcctttGCTTTACAGGTGTAATACAGT
ATCTAATTTCTTGCTCCGTTTTACTTGCATCCACCACTGAAGTGAAGTGT
GTGGGGTAATATTAAAGAAGGCTTAAGTGACATTTAGAGCAATGGAGCGT
GTCACGGCCATCCCTGGCAAAAAAGTAACCTGTTCACTTGATCTTTATTT
TTGATTCCCACGAGATAGGAATTCTTGGAATAAGACAAGAAAACCCAGTC
CACAACACAACACAGCACAGCAATCACTCAGTCACTGGCTGACTGGTCAC
TGATGATAAAAAAGCACAgtttttgatcttttttatgACCGCagagaaaa
atgttttctttttgctCACTTACACAGACTATTTAGACATTTGTTTGGAT
GAGATCGAAAAACCATCGAGTCAAAACGTGTCTACCGGACTACAGTCACC
AAAACAATCTTTAAAAGCGTGGAAAAATATCATTATTCCGGGATATGTCC
GCAGTTTGAAGACTTCCGGAATTAGCCGGCGACGATGACATTCTtgatat
tcttgatatgcgtcaagatgacgtcatatttttaacggaagcacccaaaa
aagccggtttttgacctctgtgtttctatttttagtaacagagagaggtc
aaatctcggcttttttagggtgtttccgctagaaaaatgacttacgcata
tcaagaatgaCATTGGACGTTGTTTCGGCTGGAAATCTCGTACACGACAG
CTGGGCGTAGCAAGCAGAGCCTGTTTTCAATCTTATTACAGATAGAAGGT
CCGTTTTGCccgatttttttcaaacttcactAGTACAGTCAGTTAACACC
ACTTGATGCAAAAGGAACAAGTACACTTGCGGGGAGGGAGTGTATGCGAT
TAAAAGACATTTCGAAACGACAGTTTTGAAGAAATCAGGAAAAGCCTGAA
AGAAAGAAATCTTAACACCTTTTGGAAGTACACACAGTGATAAGCTTTAT
CAACTTCCATAGTTCTGTCGGGTTCTCACTTCCGAGCAAAAAAAGTGTCG
ACGTTCGTTCTTCCCCACAACCTTgtgcccgtgtatcccaggctttattt
acactactgatggacgccagagaattatCTAGCGCCAGAtagttaaagca
taaaaaagctgataatgcgcagggaacgaggttgtctTTCCCAATCAAAA
AGTTAAGTTGTCCAAAAAGGTCCGGTAGTTTTAGTGATTCCACGGGGATT
CCACAATAAATTTATTATCCCTGGGGAGCCTGCAAGTAACAACTCTACGA
ACTCGTCGGCGGGGCACGGCGGGTTTGTatgtataaaataaaaaataaac
atatttCGGCAAAGAACTGatctatttgaaatatttctaaattgatgaat
caaaagttatgactattttctcaagaaaaatagggatgaaaaattagtca
aaaagcTAGctactattttcaagattttgagacaatgaagcttttacaaa
aatgaagtaaagatacaccatctaccgcaaaaaagaatttaaataaaAGC
CATCATGGTTTTtcttcttcgccgaaaataaggtcctcGATACGTACTTT
TTCGAGGTTCACTCGCCAATAGTAAGAAATTCATTATGGTCctttaaatc
caaaaaaataaaattgcttcACCCGTACCACGTGAATGTTTCTTTCAATT
TAAATTGTCTCCTTTTTGTGGTAagtattgaaaattatttccaCATAACA
AACAAAATATCAGTGACTACGCATCATCATGTAATGCATAAATTATCTAC
GAGTAACATTTTACCAGtataataccttatcggccgaaacttagtcggcc
ctaagtgactaaattttggcttggtgactaaaattaaggccgactaagaa
tttgggccgactaaaatttgggccgactaaaaatttagaaatggccaaaa
cttagttaTAAGCCGGCCCtcagtgactaaattttgacgaggtgactaaa
attggggccgactaataattaagaccgactaagttttggccgataaggta
aataAGCACTGCAATGTTGCGTCTTCATTATCTATCAATAAAAATTCGTT
AAACCATCTCCCATTTCATCCCcccatttttttatttattgagtTGCAGG
GACGACGATCGTTGGTATATGAGAATGGTGAACAACATAATCACTGACGC
TGCCTACCAACGTGCGTCGAATAGCACCCAGTCCTCTCTGTCCAATAATA
ATGGTAGACGCGTTGTTATCTTTGGCTACTTTacaaatagt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002613TCONS_00002613Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:299567..309007 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	2.43	0	0	4.65	1.61	3.97	8.52	3.5	1.79	0	0	0	0	0	0	0	0	0	0	0	0