XLOC_001084 (gene) - C. hemisphaerica

Overview
NameXLOC_001084
Unique NameXLOC_001084
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000018:731142..741070+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001084 ID=XLOC_001084|Name=XLOC_001084|organism=Clytia hemisphaerica|type=gene|length=9929bp|location=Sequence derived from alignment at sc0000018:731142..741070+ (Clytia hemisphaerica)
gtttcagtgtaaataattttcatttaaacTGTCAGCCGGATTGATTATAG
CTGCTGATTCATTTCAAAAAGAgtaaagatttgtaaacaaaaaagagaCA
ATGCTATTTGTTGCTTATTGATATTCAAAAGTTGAGGATGTTTTTGCAAT
GATTAATCCAAGCAATGCGTTGAAGGATGGTCCAGTACGTCGAGCATGAC
ACACTAGTTAATGAACTTGTAACTCTCGAGAATTTCTCACCAGAAGACCG
ACTAGCTCATGCCAGGAAAAGACGTCATGAACAGATCAAATCTTATGACA
GCCGGGAAACCAATCCAAATGCGTACCCTCCTGTGCATGCTAGTCACAAC
AAACGAATTCGTTTTGATAAAAACATCGAATTGATTGAAGCTGCTTCACG
GAATGATTCTGATGAAGGTTTGTTTGTAACACCTTAGGGTGGGGCCTGCC
CATTTAGCATATTGCTTTACCTCTATGCTATATTGTCGACTCTTCTTTTA
TAGTTGTGGCTTCTACCtcattacacgaatattactagtcattttattaa
cacaaattgaaaatttcgtgtttataaaaacccccttaattaaaaccagc
cgttgtttccttgaaaaagcagaaaattttaagttaaaatttcagatcac
gtgcaaatttcaaggccgttgaatacttacctagtaatatttgtgtaata
aggtattccAATTAGGAATAAAATGCCACTGTATACAACAGTTTAACACA
ACACTTGAAGTGTCTTAATTTGAGTTGACATTTCGTTTTCAGTCGAGCAT
CTATTAACACAAGCAGGAGTGAGTGCAGACCTACAAAATGAAGATGGCTT
GAGTGCACTACATCAAGTAAGTTAATATTACCCTTTCATTGGACGAGATT
CTTTAGAAGTTATTATCGTAAAGTTTGGCTTCTTGTATACAATGACAGGC
TATTTCTATAAAACGAATTGTACAAGACATCTACGTAGTTCAAActtctt
tcaaaatgtttgaAAGATTAATTTGACCAATCCCACGCTACTACTATTTC
AAACTGTGGTTCAGTCTTGTTTTTGAGTGCCCCATATCACTTAGCTATTT
GCTAGCCATATAAGTCATAAAATTTAGGGAAAATAGCAATAGACTTTGAA
CTAGGGTTAAAAAGAGCTATTACCCAGATGATAGTGAATGAACTAAAGAt
ttgttttcatattttctgAAGGCGGTAATCGAAGACTGTCAGGATGTTGT
AGAAACGCTAATAAGACATGGAGCTGACCTTGACATCAAAGATGCCGACC
TGTGGACGCCTCTCCACGCTGCTGTNAGACATGGAGCTGACCTTGACATC
AAAGATGCCGACCTGTGGACGCCTCTCCACGCTGCTGTAGCCTGTGGGAA
TCTTGATTTAGTGAAATACTTGGTGGAGAAAGGAGCCAGTCTAGTGGAGA
TCAACACGGATGGAAATATGGCTATCGACCTTGTTGAAGATATGGAAGAA
ATTGAGATCTTCCTCGATGAAGCAATGGCTGGCAAAGGTTGGTAGTTTGT
AATTAATGACATGTATTTCTTTGAATTCGGACTTTTTGTCAATCCTTTCT
TCCTGAGGGGTCCCCCTTTCTTGCTTTGTCCCCCTCCCAACCCACTTCCT
TTTCCCAGTTTTTCGGAGGGTGGCATAACCCCTTAGGAAGAGGGTTCAAA
GGGGGTATTCATCATCTCAAAGAAAACACTATTTTATAAGTGTTAGGGAG
GATAATATTGAGCATGAGATCCTTCTCAGTCTTTATAGAACTCTCCCAGC
TCATAGAATGACAGTATGTAAAGAGGGATTTTGCTTAAGCTCAGAAAATG
CTTCAGTGGTTTATTTGGATagtcatagtgcggaaaggggtctgaccccc
cttcttaaacgaccccccccccttcttggcatcccccaacctttaaaaat
gcctatcccccaaggttTTCgggctaaattttttatggtaaaaagggaag
ggaaacagtaaagaaaaattaagtctggcaaatataataccactttttag
ataaaataaagaacttcctttcatgcagaccaaatttcataacagtgctg
gaaaattaTCTACAATAATATTTAATCCCCCGCcccctttttagtgaaaa
tttctgacccccccccccttcttcacttttttggaagggggggggggttc
cgaACTATGATAGTAAACAAGAGATTTACATTATTGAACGCTGTCTTTTA
AGGTTATGACGAAGAAGGGCTGGAGCAAATTCGAAACGAAACAGCCACTC
TCATGTTGGACGAATTGAGAGAAGCGGCGCAACAAAATTCATATGATTTC
AATGTTCAAGGTTCACATGGAGAAACTGTCGTAAGTGGAATCTCAAATAA
ATTAGATTTCGTCCCTAGTGATTTATCTCTGTATTAAAGCAGTTTGATCA
CAAAGAGTGCAGAATTTTTGTTgtggaaaagtttgaaattaattttcaat
gGGGAGCATGCTTTCGTTCTGCTTTTTATATCGTCTTCGTTTGCTTTCGC
TTGTAATTTTTGGTTCCCTTCTCAAAATGCTTAGTTTTTGGTTATTGCCA
TGTATTGTGCGCAGTTAGGTAAACATGTGGCAAACAGATAACAAGAATTT
GATTTGATCAAGTATACAGAAGGACTGTGAAATagattttcttcatttca
gATGCACATAGCAGCAGCAAATGGTTACGATCAGGTGGTGGAATATTTAT
TGGATCACGGAGCTAAAATAAGTGTTGTCGACCACGATGCATGGCAACCT
ATTCACGCGGCCGCTTGCTGGGGTCACGTGAGTATTATGTTATTCGTACA
CCTGACAAGTCTTTCTGGCTCCCATTGTCGCTGAAAGTCTTAAATTAGTG
AACCACCTTTAAAAACATCGGCTTTCACTGTCCTTCGTTTCAACAATTCG
AATTTCGAAtactttaaaaatgatttccttATGACGTTTACCAATACACG
CGTTATAGTTTCTTATGACTCGTTTACCCATACACGATATTGTTTCTTAT
GACTCGTTTACCAATATACGTGTTATCGTTTCTTATGACTCGTTTACCCA
TACACGATATCGTTTCTTATGACTCGTTTACCCATAGACGATATTGTTTC
TTATGACTCGTTTACCCATACACGTTATCGTTtcttttgtctcgtttacc
aaTATACATTATCATTTCAGGACAAAATCATCGAGATTCTTGTGAACCAT
GGTGCAGATTTGGATGCACTGACAAAGGATGGTGAAACTCCTTTTGGTGA
GATTCTTATCTCCTTCATTCTGTCCGGTTTCCCACCGGATAATCCGCCTT
TCTTAGCAACACTTTCATTCAGTATTTTTAGCTCCTGAAGTTTTCGGTTA
CCGTGAAACTAGACGATTTAGTCGGCGACAGttgcaatattttcaaaaat
atgaatttattatgctaaaaacaaaacatatgAGATATACTTACTGGATC
TTTAgccattataaaaacaatgtatTCATGAACCAAAGTGGCctaaacta
tttaaaacatccaagaATGTCCCATTTCTGGATCGCCATTTTGAATCAGT
GCTTTTCTATGAAAACTGCTGCCTCGCTGTTCTTTCAAAACATTAGcttt
tcaaatatcaaaagagagcttaacctttccagcgcgcaacatttttaaaa
aaatctcaaaattttcaactgtttttttgaatcctaaaactttaaaatag
tgttaaagcttgtagcttgaaagttagaaaatggttttggtaccatttgg
aaggtatttttatactctttctaaaagtATTCAGTTTATAcccttttaaa
tcaagtggtcaggagttatagcCTTAGGTCTGAGACTTGGTATATGAGCT
CATTTTGGACGTTTATGTACGTCATTCGGGTCTGAAGGGTAAAAACGTCT
ACTTCCCTTTTCTCTTTACTTTTACGgctagcaaagaagccaatgagaaa
tatagcttagaagatTGCTATGTAAAAAAAACGAATAGGTTAAAACATTT
TGCGTAGATTGAATTTTGAGAATCAGTGATCTGACGTAATTTCGCGGGAT
CTAACATCTGgaaatttcgcgaaattaaattttgtgaaaattaatccggt
taaagtaaaTTGATGTGTCATTTTGAGGCTACAAGTTTTATAAAACACAG
TGAATCTTGGGTGAGTTTTTCTTACCGCTCGTCATATTTTGATCTTTACG
AcgtcttctttttattcagaTTTGACGGAGGACGAAGATCTGCAGGGGAT
GATTATCGAACTCAAAGAGTCTGGAACCAAATCACATAAATTGAAACGAA
GTCAAAGCAATAGCTCCAGAACGTAAGATGAAATTATTGTTACTCAAATA
ACTCAAATAAATTAACGATAAAGTAATTTCTTTACTCAATAAATACATTT
GGTTTCATTCGAAACTTAAGGCTTTATTATACCTGCTATTGCAAGAAAGT
TATTCACtgtaagaaaagtttgaagaaaaagaacttgaaacatcttcaaa
ttttcagggtcacgtgattcaatttttgaattgtttacttttttagatTA
TCCGTGCGTCGAACGAGCATCGTCGAAAAGCACAAAATTTCCGTCAACGA
CGCTAAACAAGAGGGAATATTCCGTCAAAATCCTGACTTCTTACACGTCG
TTATCAACACGGTTCGTTTGATCCTTATCTTTTCTTTGATTATCCTAACc
cttaagaaaaatatttgaaaagtttttcgtagagaaattgaaatttcacC
TGTGACTGATATCGCTAAAAAGTGTGTGGCTAAAAGAATAATATGTGCTT
CAATAGGGAACTTATTTTGTTGGAAACTACTTTGGCGCtacttctttcca
atgaaaggATTACTGTCGCGCAAAAGTACTAGGttcctcgccaaaattaa
tgtttttatgATTTTCTAAAATAACCCCTGATTTTTCCCTCAAACACtca
tttttaggtaaaaaagaAACAACATACCTTGCTATTcgttaaaattaaaa
atgagtTCTTACAGGGTTTACAAGTGTTTAAATATAATACTGtttacaaa
aagtcaaaaacttgtaactttaGTATCGTGCCGAATTTGAAATCACCATT
CTCAAAAGAAAAGTGTGTATTGTACTCTgaccttgatttttttttttcta
catggaATTTCCTCCTTCCCATTCTAGTTTTTTTGCATATAATAATATTG
TGCTAGGATTTCACTTTTTACCAAacctaattaatttttttgcgtTTTCT
TTTGGTGCAGGgcgaggaagaagaagaagaagaaacgcGGAAAGGGGAAA
CCACCtcaaacaacaaagaaaatcTCTCTTCACCTGATGAAAAACAGCCT
GCTCAACCATCACAGCCTCCAGTTGTGGTCGCTCCGTCACCTCCACAACA
ACCTACCGGTATGCTTTTCTCATCTCCTTCGTTAatcctttaattttttc
ttcgaaaagcATTCGTTTTCTGATAATTAATGCAGTGATGTTTATTGCTG
ACTCTCCATTTTGCCCACCGAGGTACTCTAGATTTTACAACCAAAAGTAT
AATTTTATCCGAAATAGAAAATTAACATAATACCGGTCGGTGTTTATTGA
ACCTGGCACAGAAAGGGTCGATAAGGTCATTTATATTACTAAAAGTGACA
AATGAGCTCGTGGAAAGTCAAACCCCCAGCTGTGttaatagatttataaa
aagaagaaagttttaagtTCTGTCTATCATTTAAACTTCTGACTTTTCTT
CCAGAAGCAGAACAACAGCAGAAACAAAGCGAAGGTTCAGTATCGGTCAA
CTTATCAACCGGGGTACATTACAAAGCGGTGGAACAAAAGATTTCCATTG
AGAGTGATaccgaaagtgaaagtgccaCTAATCACGTGACCAAAGCGAAT
AACACGCTGTCTAACGGAGGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGAATTGAGAGTTTATTTG
AGAATACCTACTAATAAGTTTTCCATTATTTCTTCTTTCTCCCAGTCTCA
GCCGATACGTATCCGGAAGGGCGGTATACGAAACTGGCGGCCGACTCAAC
GCCCCAACCAAATACGGACTCATCTCAGATTGTTTTAGAATTGGGTGATG
GCGGACAACACTCTCACAACACGGCTGTGCAAAACCATGATAAAGAACTT
CAACAATCGACTGATATGAGTGTCAAAAAGAAATGTTGTGTAATTTTATG
ATTCATTCTATGATCATATTTTATTGGATAATTCATGGTGCCTGGTTGCC
ATGTTAGATAATGACGTCATGTTTAGTTCACCACGGTGGATATTTTAATG
CGAATTCGACTGAGAAAATCACAGATAATCACATTTTTGGATGGAAtgga
actttttagaaatattttaatttaactGATCAGATGATTGTTTCCTGATT
TTATTCTCTCGATtttaataaaatgacaaaatctgcgacaaaattaattt
aaagCTTTTCACTTAAGCAAACCTGAGGGAAATAAAGAGACCATTAAAAT
AAGTAACCTATTTTTACTGAAAACAGTCTTCtttaaatacattttttatg
ttgggaattttttttttttgataaactgCTTGTCTACTTGTTCTCATATa
tttaaactttattttttcgtaaatttttcaaaaatttttgttagGTGAGA
TTTTTAACCGACAATTAAGTTATATAACAACTTTTAATTTATTGCTTtcc
attgtttttcttttgcaaATGTTTCAACTTATTGCTcggaatcaaatcaa
taaataatttaaGCAATCCCTGTGGTCCACTGACCAACTGATAACTCCCA
ATTATGTAGCTGATAAGAATGGAATTGCTAACCCGGGGGGGGTGTACTTA
GGCTAAATGGGTGtcaggtatgtgcgagccatagaggtccctttttcaca
ccctcatAAGGGTACAAAACCATTAAANAAGACGTCCGTTTCTTAGTTTC
AACTGGTACTTGGAGACCAATTATAAGAATTGAAAGATACATCACCCGAA
TAGTAGCCTTTTTTagtgcctcgttttgaaactatTACATAGGTGATTAA
ATCCCTTCATTCTTCAAGTGTTATACTTGTTAAATAGATTTAACTTATTA
TGAATTGAGAGTTTATTTGAGAATACCTACTAATAAGTTTTCAATTATTT
CTTCTTTCTCCCAGTCTCAGCCGATACGTATCCGGAAGGGCGGTATACGA
AACTGGCGGCCGACTCAACGCCCCAACCAAATACGGACTCATCTCAGATT
GTTTTAGAATTGGGTGATGGCGGACAACACTCTCACAACACGGCTGTGCA
AAACCATGATAAAGAACTTCAACAATCGACTGATATGAGTGTCAAAAAGA
AATGTTGTGTAATTTTATGATTCATTCTATGATCATATTTTATTGGATAA
TTCATGGTGCCTGGTTGCCATGTTAGATAATGACGTCATGTTTAGTTCAC
CACGGTGGATATTTTAATGCGAATTCGACTGAGAAAATCACAGATAATCA
CATTTTTGGATGGAAtggaactttttagaaatattttaatttaactGATC
AGATGATTGTTTCCTGATTTTATTCTCTCGATtttaataaaatgacaaaa
tctgcgacaaaattaatttaaagCTTTTCACTTAAGCAAACCTGAGGGAA
ATAAAGAGACCATTAAAATAAGTAACCTATTTTTACTGAAAACAGTCTTC
tttaaatacattttttatgttgggaattttttttttttgataaactgCTT
GTCTACTTGTTCTCATATatttaaactttattttttcgtaaatttttcaa
aaatttttgttagGTGAGATTTTTAACCGACAATTAAGTTATATAACAAC
TTTTAATTTATTGCTTcccattgtttttcttttgcaaATGTTTCAACTTA
TTGCtcagaatcaaatcaataaatcaTTTAAGCAATCCCTGTGGTCCACT
GACCAACTGATAACTCCCAATTATGTAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00002061TCONS_00002061Clytia hemisphaericatranscript
TCONS_00002062TCONS_00002062Clytia hemisphaericatranscript
TCONS_00002063TCONS_00002063Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00002061-proteinTCONS_00002061-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:731142..741070 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
POTEBPOTE ankyrin domain family member B Homo Sapiens
POTEGPOTE ankyrin domain family member G Homo Sapiens
POTEHPOTE ankyrin domain family member H Homo Sapiens
POTEB2POTE ankyrin domain family member B2 Homo Sapiens
POTEMputative POTE ankyrin domain family member M Homo Sapiens
POTECPOTE ankyrin domain family member C Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
87.61	77.78	130.72	134.66	249.77	187.79	160.31	167.95	118.5	143.62	93.94	96.3	54.92	58.53	53.51	62.85	100.2	88.06	49.82	66.53	73.35	73.2	76.71	74.73	86.61	85.96	188.67	160.97	121.78	129.94