XLOC_000349 (gene) - C. hemisphaerica

Overview
NameXLOC_000349
Unique NameXLOC_000349
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:1259714..1263162-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000349 ID=XLOC_000349|Name=XLOC_000349|organism=Clytia hemisphaerica|type=gene|length=3449bp|location=Sequence derived from alignment at sc0000002:1259714..1263162- (Clytia hemisphaerica)
TGGAGGTCTTCATCCATTTATCTCATTGATCTGGGAGGTTGACTTAATTC
ATGATTCCATTAATTCTTAATCTCACTTGAAATTGTATACTAAGTTATCG
AATATAGTTTAAAGCAATTTTACTACAAGAAAATAATATGACCTGTTCTA
TCTGAAGGCTATTCCTAATCAATCTTTGACTAATTTACGGATATTTTTAT
CAAAAAAATGAAACTACAGAAGATACACATCATTATTTCTTTGTATACCT
TGACCACGAACCTTGAAATGTGTTATGGAACGACCATCAACAGTAAGGTG
TTACGAAACCACACCATCATTGGAAAACATGGTAAAGAAATGAGAGTTAC
GTACATCAGTATGAAGAGAATTCAAAATAAACTTTTATTAGTTGTACCCA
TTGGAGGTGGATACGTTTCTAACAGTGACGAATGTCAAAAAAAATGCGCT
CTAACCATCAATTGTATTGCTATGAATCTTCAACCCACCGCACCAGTCAG
TAACTATTCACTATGTCATTTATTGGATAAAGATCATTACAAAAGACCAC
ACCTTTTGGTAGATGCTGAAGACTCTGAATATCACGTCGTTTCGGTAAGT
TAAAATTACATACGTTGTTTTATAAGAACAAACTACAAAAGAACAAAAGG
CTTCGATGGCCAAAATATTAAGAACAAGTTAAGAACATTTTAAATTTTAT
GGATTCTTAGAACACCCTATTTCCAAGGAAACGGCATAAAAATATTCACA
AAATGGCAAGAAGGAAACGGCATAAAACTGCTCACAAGAGCATTCTTAGT
CTCAAAACTCAAAAAGGTTAAGAACATACGAAGGTATACACGCTTTTTTT
TGTAAGAAACAATAAATCACTGCTGAGGTTGGTTGGCTGCTGCTGGTAAC
AAAATGGCAAATTAATTAAGAGCACTGTAAGAATATTTTTAGTCTCAAAA
CTCAAAAAGGTTATGAACATCCGAAGGTATACACGCTTTTTTTTTTTAAG
AAACAATAAATCACTCCTGAGGCTCGTTTGTTTTTTACTTTGAGCATCAA
ACACTTTTCATCCCGTCCTTTTCGCTTTGATTTGCTTAAAATTCTACTTT
TCCATGCAAAGCTTTTTGTTGCTAAATTGTTCAAGTTTTTTTAGCCTTAT
TAATGCGCTATTAAATTGTCAAAAGAGCAAAACAGTGTAGATAGTTTAAT
AATTCAATGACTTTCTAAAATGGCTGATTTGAACCAAACACAAGATATTT
AGTCATATCATNATAGTTTAATAATTCAATGAATTTCTAAAATGGCTGAT
TTGAACCAAACAAGATATTTAATCATATCATTGACTTTCAGAGCGGATGT
TTGAACAAAACAAATCCCATGTCGCCAAAATGCCAACCATCAGAAGCAGG
TGTTGAGAAGACAACATATTGCCATCACAACTACTCTGGAGACGAAAATT
ACGAATGTCGTTGTAGAAAAAATAATTTATGCTTTCTGAATGGTGAGATT
TCTTAGATCTTTGGTTTAAGTTTCTGAAAATTTCTGATTGGGTGGAACTC
AGCTTCTATTGTCGTACTTACTCAAGAGGAAAGAAAGGAGACAAAAAGTT
TAAACCTTGTCTACCAGTATCTTTTTATAAATCATTATTTCATTAAGAGT
AATCAGTTGGTACTGGCAAAAGTGATGTCTCGCACTTAACAAATTCAATA
TAACCAATACCTGTCAATAAGCATGCCAAATTCCAGCCAAGTCCGACCAC
TATTGAAGTCTGCAGGCTGCCCCAAAGATTTAACCTCGTTTTTGCAAAAA
AAATCAAAATTTTGGAAAAATGAAAAACACCCCCAGATGTTCACCCAAGG
AACAAATATGCCAAATTTCAGCCAAATCTGACCATGTTTGAAGTTTTCTG
CCTACCCTAAAGTTTTTGCGACACACACGCAGATAAAACACACACATTGT
CAGATTCNCCTAAAGTTTTTGCGACACACACGCAGATAAAACACACACAT
TGTCAGATTCTAGCTCAAGTGAAGTTGAGAATGACTTATTAAATTCAGGG
TCATGTTCGTTTCGAAAGGAATTGACAATTATCTTTTAATCTTCTTGACA
TTCCAGAATTGAAGCCCGTTGTTAACGTACATTATGACAGACTACCATTT
GCAAGGAACCATTGGTTTATCAAATTCAACCTCACTTTGCCATCTAATAT
AACAGAAGACGGACAATTTTTCCGTTTCAATAGTTATAGTGAAGGCGAAA
ACCTTGGATTCACGTTGTTTTATTTATACTTGTCAAATAAAATATATGCT
AATTTTCGGGAACCATCTTGGATAAGAACACCTCTTGTGGTTGATCAACC
ACAACCAAACCAAGTAATGGATATTGAGGCAAAATCATTTTATAATTCTC
AAACAAATAGATGGCAGCGAAAGATATATCTTGATGGCGTCCTAAAAGCT
GAAGAAACAACAAGCACTACTGGAGCATTTACCATGAACGATGTTACATT
CATTTTAGGGAGCACCCCAGCTACAATCACTGATTTCAAATACTCCTTGA
CTGAACCAAGTGGTAAGCTCTACTTTCTACTTTAAGGGAGCTAATTTTTT
AGGTAACTAATTTTTGCGCGAAATAAGTTTCGCGGGAACTAATTTTCCTA
ATTCCTCTCTCTGGGTCTCCTCCTTTCTAGGCGAAATTTGTACCAGGTAT
GTGCAGGTAGGTAAACCTCAAAAGATTTTACCTTAAAGTGTCGATTTTTG
ATTTTTTTTTGCTTGGACATACCTATCACCTGGCAAACATAGTTCCCTAA
GACTCCTCCACAAGTAAGGAGTGTAACTGGTCATGTTTTTATTACAAAAT
GTTTCAAAGTGATAGAAAAATTGTTATGAATAGTGGTGTGATGATAAAGA
TTGATTTTCAAATTGATCATGGGTAACTTTCTTGCCAAACATAATCTTTT
TTTATTAATGTAGAAAATTATCCAATATCAAGATGTTAATTAATCTCCAT
CTACATCAATATTTGTGGCAGAACACGTATAATCTTTAAAAGGAAAGTAG
AAAAGCAAAATAGGGCCATAAATATACAGCAACGAGAGCAATTTTTCCCG
ACAATGTGATTTTAGTTTCTGTTCCTGTTGGTCAAACTTAAGCATTAACC
AGAAATACTAAATTATCTTTAGAAATACCGATAGTATACCCTGGAACAAG
ATCGTTGATAAAATTACCAGCTCTATCTCGCAATTGGATGTTTCATTTTG
AATTCAAGCTCACCTCAGATACATTATTGTCGCCTGCATCATCAAGCATA
CTCATTGTAGATGCTAATGAAGGAAGCCTGTTTTATGTAATCGTGAAAGA
CCCATTGACCCTTGATTTTAGTGGTGTTGGATCCTTTCAACCGCAAAAGA
ATGTGTATCATAAAGTTGTTATCACGCAATTTTTCTCACCGTTTCAGAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000594TCONS_00000594Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000594-proteinTCONS_00000594-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1259714..1263162 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.03 tpm) - - (13.34 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26	0.28	0.26	0.03	1.4	0.88	1.68	1.13	0.62	0.99	0.46	0.87	6.05	3.51	1.31	1.35	0.24	0.45	5.86	5.9	0.95	1.02	0.97	1.29	1.35	2.77	13.34	7.32	0.49	0.33