XLOC_000301 (gene) - C. hemisphaerica

Overview
NameXLOC_000301
Unique NameXLOC_000301
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:1382700..1393081+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000301 ID=XLOC_000301|Name=XLOC_000301|organism=Clytia hemisphaerica|type=gene|length=10382bp|location=Sequence derived from alignment at sc0000002:1382700..1393081+ (Clytia hemisphaerica)
TTTAACTGAACAATCAAGAATATTTTACTGGCCCCAAGGCGCCGTCGTAA
GCCAGTGGGGTCCCAAACTTGCAAAGTTTGCACTAAATATCATCTTTTCA
ATCCACATTGCATTTGTTTTTGGCGCGAAATAAAACATAAACCCAAAGCA
GCCAGCCAGAGACTCCATTTTTTATACTCTCAGACTGTATAAACTTTGCT
ATTATATTTCATTTGCCAGTATTTTCCTTTCACGTTTGGCTCAATTATTA
AGATGGCAATTGGTGCTGGAGGTATATATTttattctttatattttttct
acaGTTGACAGTTATTTTTAGTCggcagtcgggtgtttaagataaaaact
gcaattattgctcttttcggaaattattgccgaaaacggcaattttttta
acgatgaaatgctgaatcagtaGAAAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNcattttgctgattcagcatttcatcgttaaaaaaattgccgttttc
ggcaataatttccgaaaagagcaataattgcagttttcatcttaaacacc
cgactggtcGGTGGtgtgttttttcagttttttttaggccagacgtccgc
gctcgataggatcgatcatcggaacggctcgatggcggatcgatatgtga
tcgatggattacttaacgatccggataggagattaatagaggatcgatac
tcaagtttttttaagcttatgatgattagttatcgatcttatcgaccctt
tCGAACTGCTGTTCCCCTCAGGCAAAATCGTCGATTCTGTAAAGGTCACG
AAATTGCTGAGTACagacgtcgaaaaaaaaaaattcaaaatggctgccga
gcgagcactgactaaaacaaaaaatcaggagtTTTCATTATTTGCCTACT
ACAACGGAATAAGACAGAGAaatgcagtaaaataaaaagtaaacaaacca
ggaccctgccgacgcaccggacttaacgaacaccggacacgcaaaagtcc
ggtgtaaaatgagaattttttttaccaccggacaatctctacacNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNct
tttttttacaataacatttgtcttctcacaaatccaaaaatataGGTTAT
AAAACCAACACGGGGGTCAACATTCTTTACAACAAACCGTCAgatcaaac
tttaaaaagatcaaCCATGTAAATGTCACTTGTTTTCCTGATATTTGGAT
AATATTAAAACCTTTCTGTATATATTTGGTTCTTCAAAGCCATTTCCCTT
TCCCGCagcaggctttaaagttcatgttGACCCCCAGTTTTTTTTGCGCG
GTAATCTAGAAAGGCCTTTAGTGCggtataaacaaatgatttcattggtt
taaaaaagtgaaaacatcAAGCTATATCACGTGATCAGAATCATGATCAA
ACTAAACGGTTTAGTAAACTCGACCacgtatcaatgttttgatttttcaa
gcagggatttctgtagaatgataaaatatggcTTGGCTGGAATGGATACC
ATGTAATGACCTACTGTGAGAACGGGTATAATTTGCATAAGATAAGGGAA
GGACGGGGAGTTTTCTGGCAGAGAGCAgtaaaaaacactatttttctttc
cagaaAGTTCCGGAGCTCTTCTGGTGCTTCCGGAGCAAGTTATTTTTACC
ACATTCTAAAAACTGTTTAAAcatgtttacaaaaaaatatttgtccccaG
GTGGACTTTGGTCAAATAAAATACTTACAGTTACAGACANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTCCAGAGAGATAGTGCTTCGTTTTGTTAGGCCTTGCTTA
CACTCTGTAGTAAGAATAATTCTGCACATGGAATAGGTCTATATTTGAGG
TCAggcaaaatttccaggaaatagcctatccagcCATGCACAGATCNCAT
TTTTTCAGAAGGTCTcatccccccttaagaaagggggaaCGAACTATGAG
GTGACTGATGTTTTTCCTAATGTGACTAACAGGATATAAGGATTAGAGTT
TCCTAAATAAAGTTCAAGAttccaagaaaattttttaattaaaacttgaa
aacttgacATGAAACAAAATGACTGATTATCTACGTGCAGCAGCCAGCTA
TAATCAACTGaccaaaatttgttatttaTATAATTCCAGAGAGATAGTGC
TTCGTTTTGTTAGGCCTTGCTTACACTCTGTAGTAAGAATAATTCTGCAC
ATGGAATAGGTCTAtatttgaggtccggcaaaatttccaggaaatagcct
atccagcCATGCACAGATTTATGTGGGTGTCTTCTcccctgtagatcttt
ttcttgggaagttgttcttcaaattaattttcaaggttggctctcttagt
ttttgaaaatgttaatttcattaaaaagggtcaatttatttttatcatga
atccctttagaagttttgtgctgcatttttttgcttttgagtCAAATGAA
CAATACAGCACATTttcagcattaatctttgatacaacTATTGGTGGggc
gctagtgtgactaactcgTAACTGATGTAGGTTTCTGAGTACAGTAATTT
GGAATAAAATATTCCAGCTCtccgaagctcatttttcaactatccagagt
cctggtctttttctgGTAGAAAAGTAGCAGTGGAATTTTAGTGTGGGAAA
GGGAATGTTATGCAAAGAgcatctacaatcagtgacaaaataattggcac
aaaagggaaattccccacaaaatttcatagccacaaacaatttggaagcg
ctctaaattaggttggaagggtaataaatagtaataataataataaaata
tgtTTTAAGTGGCATGCTCCAAAAAACTCTAGTATTTACACCCTGAGCAT
CAGGCCCACCACCATTACCACAAAGAACAAAACTTTTAGAAAGATAAGAA
GGACATATATTTTGAATAGCTTTAAAAGTCATAAGAGCTGTACTATAGTT
TGCAACCTTATTAAATGATTTGTTCATCGGAGTAACATAGATCTATCTGT
CTAGATAGTGATTCAAAACGTTTTCCAACATGTTATAGAGTGTTACTCCA
AGTATTTACGCAATAACCCAAATGGGGATATACCAAGGTATTAACCAATA
ACCGTTTCGTATCATTATTCAGAGTTGAGCTcacctttttgattttgttg
agtCCTAAGTAGGCTTGTTGTCTAACAAGAGCGGCATGTTTTTCTCAGGT
TAGACCTTCGTCAAAGATGACGCCGGGGTATTTGACATGTGACTTAGGTT
CGATTGGacagttttgaaaagatatagGAGGCATATCCTTCTGTTTTCTG
CCAAAGAAAATCACttcagtttttgtggtgtttaCAGATAATTTATTGCA
ATAAAAGGGtggagttttaactctgagttttaacgctggacttaggattt
gaggatccaaaagctcaaaaatggtccagtagggcttgaaatatagccta
gaaaccaataaatcattcccagatcgaaataatcaatgaaatCAAGTCAA
AGGcccaaaattgacattctcgctcaaacttcaattttcgaaaaaatggt
gGAATaaccaaaattgccaatatgttatggcactgattgtagtaaCATGA
AAGGCAAAATATATGATTCTTAAATGggaaatcaaaactataaaatgCAC
TAAATAACATTAATTTGTCAGATGTAACAAAATCAGTAGTAACAGCACTG
TCAtcaaaaggattttctgtcaaaaatGAGCTGCAATCAATATgattata
atatatttttaagAGAAAAGAATGGGTGAGGGAGTAGGAAATGTGTAACA
CTCAAAGATGAAGGCTGTTTTGATAGGAGAATATTTCTAGAATCCAATAG
AAATTAATTATACCACGATTCATTTTGTTTATACTTACATGCGaataaat
ttcaaacttttctctttttcagcTCCAATTGATTCAACACTTGAGAAATA
TAAGATTGACTCAAATGAGGCACTCAATATTAAGTTAGGTAGGTTGTAAT
AATCAGTCAGTCAGGCTGAATCATTTGAGACGTGTGATACATGCGCACGC
CTCCACACACGCCTAAAATCTCTGAGGAGCGcgatttttagtttttatta
ttAAAAGTGGTGGCTAGCACGCATTATCACACGTCTAAATCATCAAAATT
CAGAttttaggagtgtgattgaccacaTGTCTGAATTCTTCAAATGGCAA
AGCCAGCAAGATTACAGTAAGAAGTATAAGAAAGCTTGAATTTGGCCATT
ATTCCATCCATCATCTCTAATTTGTCTAATCTCTACTTTTGTATACCCCT
ATGAAACTCCCCCATATTTTCAAACTTAACCctgaaaaggtttttttatg
gaaaagttcattgattattttattaaaataaattttagtccACAATGAAG
AAGATGCAGTTAATGAGGAAACAACATTCCACTCTGAAATGAGTCACCAG
GTTTTTGGAGATGGGTAGGACAAAATTATTTCACAAATCCTTTCTCTGTT
CCTCTTCTGAAAGAAATTTGCAAATTGTAGCCTTCTAACTgtaaaatgac
taaaatttgtcTAGTTGTCGAGGTAAATaataaatgatttttatttttac
cttATCATTATCAGTAACATAGGGGATATTCTGGTTCACTTAACCTAAAT
CTCTGTGGTAACTTCTTCCTAAtattaagcaaaaaatagttgaGTAACAA
ATTAAAAGGTCCTACATATCCTTTTCCTAAACAAAAGAATGAGATATCTA
TGAGAATTGTATTGTATTTAGTAGAtgcatttgatttttgatttttattt
aggGAAGCTATATTTGGTTATAAAGATCTGAAAGTTAAGGTAAAAGTGGa
ttgtgttaaaaaaaattaatttattgttctacaggaaacccttcagaaaa
atattggtTAGTCGGTataataaaaatcttaaaatctagggtcggaCAGT
CAAGATCTAAAGAATTTCTGACGTGATGAATTTGCACTCATTCATTCAAC
ATGTTCAGttaaaaatatctgaaaaaaaattactattattttttcgattt
tggaaaaaacatGATTGGTAGCACACTATTTTATCATTGTAGATCTATCT
AAGTTGAGTCATTAAAGGAAAAATcgctttgaattttgaatttatattct
tttatatCATCTGTTTTATTTCTAGTTGTATTACCATGCTGGCAGTCTGT
TAACGTACATGAGCATGTCATTTGACTCCAAAATCCCTGAAAAATTTGGT
ATTAGTGTAAGaaagttttgcattttttgataaaaatttaatgTCACAAG
TTTACTGctacaaaattaaaaagtctaGTTACTAGAAATATAATTGACTT
AATAACCCTTTTTAATTGTAGTGCAACCTTACCTAAGCCTTATCCTTTTg
tataatttgaatttgaagaaactGCAATATTATTCACCTGAATGTGTAAT
AATCTGTAATAATCGTCCTAAAAGTATCTAGAAACTCGTTTATAGCTCGT
CTACGTCGTCTACGCCTAACTGTTTTACTGGTTAATATAAAAGGACTTAA
TATCATGTCTTAGTATAGTagaaacttacttacttacgatactaaaatga
tttaaattttcttttttatagccTGATCCAGTTCTACCAAAAATTGCAGA
AATAATCCCAGAAGGTATGTAAAAGAACGGCAATTTTTCTTGGATCtaga
ttttaaacatttttaagtTGCTATTCTGAATCAATGTTGCAGTGGATCta
gattttaaacatttttaagtTGCTATTCTGAATCAATGTTGCAGATTCTT
CACTCTAGACGGATTTTTGTCCCGTTctatttctgttgtttttttggCTG
CACTTTAGTTAACTATATTTCAAGACTGGCTTCAAAGCAATTTAAAGATA
TGTCGTTATATAGTTGCTATCCGAAATCAGTGTTGCAAGTTCTACACGTC
GATGGATTTTGTCCCGTTGTATTTTTAAAACAATGCATTTTCATCTCCGA
ATGTTGATCAGTAATTTAGGCCTCGTTTTTTGTCAAGTATGATTTTCTTC
NGAATGTTGGTCAGTAATTTAGGCCTCGTTTTTTGTCATGTATGATTTTC
TTTCATCTTCAATATTCCACTTTTCTTTGCAACAAGTGCAGTGCTTAAGG
CTAATTAAGATTGTAGTAGTAAAACTAAGCAATTATGTAAAAACATATTT
CCATTATTGTCTTATTATTGCAGGTTTTGTTTCTAATTTTGATGAATTCA
CCAAGCGTTTACCAGAAGAAAATAAATTCACACCGATGGGATCGAAGGTT
CACTCTTACACACATGAAAATGAAGTCGGTGTAGAATATGAAGTCTATCA
TGTATGTGAATGAGTTTGTTTAATGCTTTTTTGTTATCGATTTCTCGAAA
ATATAAAATATGCTTAATGTAGGCTCTTCTAGTTTCATCAAGAGTATCAA
GACCACTCAAATTTTGTTGCCTATTTTTAATTTGGaatgaattcttttca
aaatgaCCATATATTTTGGTGATTGCTGTATTAAGGTTTTTGTGAAAAGA
AAGTGAGAAATAAGAGTTCTTTGGGCAAACTAACCAACGGGAGTGGAGGA
TGTGTTGTCATTTTTAACGGTGTTTTTTAATATTCTAGTGTGACATTTTT
ACACCACGATTAAAAGAATATCATGAACGGTTACAGACTTTCATCATGTG
GTACATTGATGCAGCTTCCTTTATAGGTGATTTACAATATATTGATCAGT
GTAGTCTGCACCTCCTTTTTAATAAAATGCAAGTACCaagatttgccaaa
aaaaacaaacaggaaggatgataccgggtgcgccacaaaaaagtttctct
ctttaaaactaattttcttgaaatctaaaagttttaaaagaatcatccct
atttcattggaaagaagaaagataaacttaaattttgatgggtcatttat
ttaACTCGATtgattagatcaaaagttatgctcaattgaataaaaaagtt
actttcggaaaatgctcaaaaacggtAAAAAATCGACCTATAGAATTAAA
CATAAGCATGATTTcatgatatatcagtattttcgttacagtcattaaaa
atgataattagctgtctaaatgacctttagttatttaaaggaaggttgaa
tttcaatgaaaggaagaaaatccgtcgaaaaaggccaaataatctggtaa
aattcctaaaaatacatcaaatatgggttttgaggtagatccagccttac
atagactttatccagtctagaacaaaaaatttgaggaaaatttcggtaaa
actaaattaaattgattttgatgaagattttaaacacTTTCgccccttca
gtttcaaaatttatgtgttttgttactgaaaaatgctcttaatcatgtaa
aggctaatgcaattgccaaatttaaagtaaaaatttgataggtcgNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtcagaaagtaacttttttattcaattgagcataacttt
tgatctaatgaatcgaatttaataaatgacccatcaaaatttaagtctat
ctttcttctttccaatgattTAGGAGTGGTTCTtctaaaacttttagatt
ttgagaaaattagtctcaaagagagaaacttttttgtggcgcacccggta
ttttaGGGGGGAGGCGTCAAATAGAAAGGGTGGGGTCATTAGATTTTAAT
GTGATAATGTTTGATCAAAGTGTTTTTGTCAATAAAGACGCAAGTTATAA
TATTGTGAAATTTTACCTGTGACTGTTAATACTTTGCACTATTTGATCAT
TTTGGTGGTCCATTTAGAGCAAGTTTCCTTTGGAGTGGATTTTCTGTGAA
AGAAGCGGAGGTATTCTATCTCATTATAAAAGTTGGGATTATACTAGAGG
GAGGGACTGAAATAAACATACCCTTTTGCAAACTATACCCCAAAACCTGG
ATTAAATGAATTCtgttttataagcaagtgtcagctgctatatcaggctc
gcattatgtttagcattctattgttcttagacaatagaaacaaaaactga
gcctgtatttatgcttataaacgttatgcttatagaagaaaaaacatgta
agttttcttattatttgtCAGATGCTGATGATGAGAAAtggaatttcttt
ttattgtaAGTTGTTCCTTCCAATAGTTATTATTTTTCATACTATATGAG
TACGTACCTTTGAGGAGGGAATTAAATTTCACTGTTCTGCGGTTTTTTAg
caaaccgcgaaaattagaacCCGCGAATCACAAATTtggccatttttcat
caaaaatttgaaaaatccctaaaaaattgaaataaatgtGTCTAAAATAA
GGCAATCGCGAAAGTTAGCTCcagctaaaattagttccctttcCTACAGA
AGAGTCCCGCAGAAGAGCTATATTGGAATTGAGATCCTTTTTGCCAACAA
TTACCCATTAATTCGTCAATCTTTTACCTCCTCTTTTGTCTCTAATTTCT
ATACCTATAAGTATAACATGTTTCAggttcaaaaagaagaaagggcCAAT
GGAACCTCAATACAGCATCATGGGATACATGACtgtttatcattattttt
catatCCTGACAAAATCAGACCACGTATTAGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000477TCONS_00000477Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000477-proteinTCONS_00000477-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1382700..1393081 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
111.11	113.05	46.97	34.99	6.9	6.08	13.03	10.9	17.54	14.95	14.31	12.72	8.51	8.9	12.71	12.47	17.44	18.97	3.14	4	12.8	9.96	44.57	43.8	15.43	19.28	14.84	9.22	22.17	21.87