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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97483_cuf3 >transcript:BL97483_cuf3-protein ID=transcript:BL97483_cuf3-protein|Name=transcript:BL97483_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=244bp
LTRTDRLDPVCPAMDERERVDCHPEGKAARARCEARGCCWSPAATQGPPS
CFYPTNHGYEVDGEVAKTASGYRARLRRLKSPTMYGGDVETVELLVEMQE
EHRLHVKILEPAEARYEVPEAALRVPRPGQAADSPMYDVTFTHRPFSFKV
TRRSTGATIFDTSVGKLTFGDQFLSVSTRLASSNLYGLGEHVHRRYRHDL
NWKTWPIFASGANPFGNYENLYGHHPFYMCLEDDGKANGVMLLN Run BLAST on NCBI mRNA from alignment at Sc0000011:1619959..1622492- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97483_cuf3 ID=transcript:BL97483_cuf3|Name=transcript:BL97483_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2534bp|location=Sequence derived from alignment at Sc0000011:1619959..1622492- (Branchiostoma lanceolatum)
TGCTGACCAGGACGGACCGCCTCGACCCCGTGTGTCCCGCCATGGACGAG
CGGGAGAGGGTCGACTGTCACCCCGAGGGGAAGGCCGCGAGGGCTCGGTG
CGAGGCGCGGGGCTGCTGCTGGAGCCCGGCGGCCACCCAGGGCCCGCCCA
GCTGCTTCTACCCGACGAACCACGGCTACGAGGTGGACGGGGAGGTGGCG
AAGACGGCGTCGGGCTACAGGGCCAGGCTGCGCCGACTGAAGAGCCCGAC
CATGTACGGTGGCGATGTGGAGACCGTAGAACTGCTGGTAGAAATGCAGG
AAGAGCACAGACTGCACGTAAAGGTTTGTACTTCCCTTTACTTTGTAAAT
TTTTGGTGCTGTATAACTTAAGTCATTGCAATTCTATATCTTGTAATGCA
CTGAAAAGAAATGTACCGTAGTATGTATGGAAGACCCCAGAACGATTGAT
ATACCAATCGATCAATCAATCGTTCGCAGGCATCAATGTCTGAACGATTG
ATATACCAACCTCCGAATTCTTATCCAGTTGTAGAGTTTGAATTCTCTTT
ATATACTGTTTACCTGAATGTCTAATCTTCACAAACGAATTGATATACCA
GCATACAATCAATTACTAATTAAACAGACATACGACCAAACGTAGGTCAT
TTTGCTACAATGACCTAATTACACTTTATGTAGGCGGTAGAGACATGCAA
GGTAAACACTCGTAACAAGTAAACTCTTACGATGTTAGAGTATCTAGTTA
ATATTTCACACAATGACCCACTTGGTGTTAGGTTATCGACGCGGGTTTTC
TTAGTTCAATATTTAGAAACGTTAACGTAAATGCACTCGAGGTGAACCCC
CTGTTTACTTAATACATAACATATACCAGTCAGGACTGTATGGACACATG
GTTCGAAAATATAATGCCACTTTGGCTAAATAGATATTTACAAATGTTAA
CATCGTTGTATACTCGTGGTAAACCCCTTGTTTACTTAATAAGTTACATA
TACCCACCTCAGGACATTAGCTGTGCAACCGAACCGTAACAACCCAACAC
GTTTTGTCTACAGATCTTAGAGCCAGCCGAGGCCCGGTATGAGGTTCTTA
AACCACAGGTTCTTATCTCTGTGCTTCTCCACAGATTTTAGACCCTGCCG
AGGCCCGGTACGAGGTTCTTAAACCACAGGTTCTTATCTCTGTGCTTCTC
CACAGATTTTAGACCCTGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCC
CTGCGGGTCCCCAGACCCGGGCAGGCGGCGGACAGCCCCATGTATGACGT
CACCTTCACTCATCGGCCCTTCAGCTTCAAGGTCACCAGGAGGAGCACCG
GGGCAACAATGTCAGTCATCACGTCATGGTTCTATCTATAGATAAAGAAA
GCACGACTAACTCACACAGTCCAAATGAAATCCTCGGTGTAACAGACCGC
AGGCCACAATATATTGGTTGTCTACTGGGCAAATAAGAGAAACGACCAAG
TTAACATCGCTTACAATCAAATATTCATTTCATGAGTAAAATAATTGTTG
AATGCGCCTTAAGCTTACTCATACATATCTACTCTGAAAGGATGATGATA
CCAATGTTATATAGTCTGCGTTACACAGTCTCTCACTGCCAGGGGCCACT
TGGACACCTCTTCTTGGGGGTCGCAATGGCAGCTTGGAGCGTGATTTAAC
CTGATAAACATTGAAATCTACCCGACAAGGTCCAGGTTTAACCATACAAC
ATGGCGGACAGCTCTTACGTCATAGTCACGTGAGCGCAGACGTCTTATAC
ATTGTCCTTACTGACGCCTATTTTACACGCCCAGATTCGACACGTCCGTG
GGTAAGCTGACGTTTGGAGACCAGTTCCTGTCTGTGTCCACCCGGCTGGC
CAGTTCTAACCTGTACGGACTGGGGGAGCACGTCCACAGGCGCTACAGGC
ACGACCTCAACTGGAAAACATGGCCCATCTTCGCCAGCGGCGCAAACCCA
TTTGGGGTAAGTGTTACCAAATTCTGTTATAAGGGGCAAATATGATATCT
TTGTCGTTAGATAAACCGGTAATTGTGGAAGAAGTCGCAAATGGCGTATA
GCTGTTGAACACTTAGCAACTTTTGTGTCTTGCCATTTTTAATGTATGCA
GTCAAACCTGTAACGTTACCTGTACCTGTACTAGTGAACCGCCACTATAT
ATATGTATTTATATATATAGGCACTCCTGGCCTCTATTACGTAGTTGCTT
GACTATCCTATGTATAGTGGCAAACTGTCTACACCTATCTACTATGACCT
AGTCCCTTGAAGGGTCCATAAAGACGGGTTGGATTGGTCAGCGAAGGGCG
CAGCATACTGTCGGGATTGAGGAATCCACTTGTGTGATACCCCTTCTCAC
GCGGCCAACTGTTTCAAATTCATGTTTTTTTGCTATTTGTTTGAACAGAA
CTACGAGAACCTGTACGGCCACCACCCGTTCTACATGTGTCTGGAGGATG
ACGGGAAGGCAAATGGCGTCATGCTCCTCAACAG Coding sequence (CDS) from alignment at Sc0000011:1619959..1622492- >transcript:BL97483_cuf3 ID=transcript:BL97483_cuf3|Name=transcript:BL97483_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3660bp|location=Sequence derived from alignment at Sc0000011:1619959..1622492- (Branchiostoma lanceolatum)
CTGACCAGGACGGACCGCCTCGACCCCGTGTGTCCCGCCATGGACGAGCG
GGAGAGGGTCGACTGTCACCCCGAGGGGAAGGCCGCGAGGGCTCGGTGCG
AGGCGCGGGGCTGCTGCTGGAGCCCGGCGGCCACCCAGGGCCCGCCCAGC
TGCTTCTACCCGACGAACCACGGCTACGAGGTGGACGGGGAGGTGGCGAA
GACGGCGTCGGGCTACAGGGCCAGGCTGCGCCGACTGAAGAGCCCGACCA
TGTACGGTGGCGATGTGGAGACCGTAGAACTGCTGGTAGAAATGCAGGAA
GAGCACAGACTGCACGTAAAGATCTTAGAGCCAGCCGAGGCCCGGTACGA
GGTGCCCGAGGCGGCCCTGCGGGTCCCCAGACCCGGGCAGGCGGCGGACA
GCCCCATGTATGACGTCACCTTCACTCATCGGCCCTTCAGCTTCAAGGTC
ACCAGGAGGAGCACCGGGGCAACAATATTCGACACGTCCGTGGGTAAGCT
GACGTTTGGAGACCAGTTCCTGTCTGTGTCCACCCGGCTGGCCAGTTCTA
ACCTGTACGGACTGGGGGAGCACGTCCACAGGCGCTACAGGCACGACCTC
AACTGGAAAACATGGCCCATCTTCGCCAGCGGCGCAAACCCATTTGGGAA
CTACGAGAACCTGTACGGCCACCACCCGTTCTACATGTGTCTGGAGGATG
ACGGGAAGGCAAATGGCGTCATGCTCCTCAACCTGACCAGGACGGACCGC
CTCGACCCCGTGTGTCCCGCCATGGACGAGCGGGAGAGGGTCGACTGTCA
CCCCGAGGGGAAGGCCGCGAGGGCTCGGTGCGAGGCGCGGGGCTGCTGCT
GGAGCCCGGCGGCCACCCAGGGCCCGCCCAGCTGCTTCTACCCGACGAAC
CACGGCTACGAGGTGGACGGGGAGGTGGCGAAGACGGCGTCGGGCTACAG
GGCCAGGCTGCGCCGACTGAAGAGCCCGACCATGTACGGTGGCGATGTGG
AGACCGTAGAACTGCTGGTAGAAATGCAGGAAGAGCACAGACTGCACGTA
AAGATCTTAGAGCCAGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCCCT
GCGGGTCCCCAGACCCGGGCAGGCGGCGGACAGCCCCATGTATGACGTCA
CCTTCACTCATCGGCCCTTCAGCTTCAAGGTCACCAGGAGGAGCACCGGG
GCAACAATATTCGACACGTCCGTGGGTAAGCTGACGTTTGGAGACCAGTT
CCTGTCTGTGTCCACCCGGCTGGCCAGTTCTAACCTGTACGGACTGGGGG
AGCACGTCCACAGGCGCTACAGGCACGACCTCAACTGGAAAACATGGCCC
ATCTTCGCCAGCGGCGCAAACCCATTTGGGAACTACGAGAACCTGTACGG
CCACCACCCGTTCTACATGTGTCTGGAGGATGACGGGAAGGCAAATGGCG
TCATGCTCCTCAACCTGACCAGGACGGACCGCCTCGACCCCGTGTGTCCC
GCCATGGACGAGCGGGAGAGGGTCGACTGTCACCCCGAGGGGAAGGCCGC
GAGGGCTCGGTGCGAGGCGCGGGGCTGCTGCTGGAGCCCGGCGGCCACCC
AGGGCCCGCCCAGCTGCTTCTACCCGACGAACCACGGCTACGAGGTGGAC
GGGGAGGTGGCGAAGACGGCGTCGGGCTACAGGGCCAGGCTGCGCCGACT
GAAGAGCCCGACCATGTACGGTGGCGATGTGGAGACCGTAGAACTGCTGG
TAGAAATGCAGGAAGAGCACAGACTGCACGTAAAGATCTTAGAGCCAGCC
GAGGCCCGGTACGAGGTGCCCGAGGCGGCCCTGCGGGTCCCCAGACCCGG
GCAGGCGGCGGACAGCCCCATGTATGACGTCACCTTCACTCATCGGCCCT
TCAGCTTCAAGGTCACCAGGAGGAGCACCGGGGCAACAATATTCGACACG
TCCGTGGGTAAGCTGACGTTTGGAGACCAGTTCCTGTCTGTGTCCACCCG
GCTGGCCAGTTCTAACCTGTACGGACTGGGGGAGCACGTCCACAGGCGCT
ACAGGCACGACCTCAACTGGAAAACATGGCCCATCTTCGCCAGCGGCGCA
AACCCATTTGGGAACTACGAGAACCTGTACGGCCACCACCCGTTCTACAT
GTGTCTGGAGGATGACGGGAAGGCAAATGGCGTCATGCTCCTCAACCTGA
CCAGGACGGACCGCCTCGACCCCGTGTGTCCCGCCATGGACGAGCGGGAG
AGGGTCGACTGTCACCCCGAGGGGAAGGCCGCGAGGGCTCGGTGCGAGGC
GCGGGGCTGCTGCTGGAGCCCGGCGGCCACCCAGGGCCCGCCCAGCTGCT
TCTACCCGACGAACCACGGCTACGAGGTGGACGGGGAGGTGGCGAAGACG
GCGTCGGGCTACAGGGCCAGGCTGCGCCGACTGAAGAGCCCGACCATGTA
CGGTGGCGATGTGGAGACCGTAGAACTGCTGGTAGAAATGCAGGAAGAGC
ACAGACTGCACGTAAAGATCTTAGAGCCAGCCGAGGCCCGGTACGAGGTG
CCCGAGGCGGCCCTGCGGGTCCCCAGACCCGGGCAGGCGGCGGACAGCCC
CATGTATGACGTCACCTTCACTCATCGGCCCTTCAGCTTCAAGGTCACCA
GGAGGAGCACCGGGGCAACAATATTCGACACGTCCGTGGGTAAGCTGACG
TTTGGAGACCAGTTCCTGTCTGTGTCCACCCGGCTGGCCAGTTCTAACCT
GTACGGACTGGGGGAGCACGTCCACAGGCGCTACAGGCACGACCTCAACT
GGAAAACATGGCCCATCTTCGCCAGCGGCGCAAACCCATTTGGGAACTAC
GAGAACCTGTACGGCCACCACCCGTTCTACATGTGTCTGGAGGATGACGG
GAAGGCAAATGGCGTCATGCTCCTCAACCTGACCAGGACGGACCGCCTCG
ACCCCGTGTGTCCCGCCATGGACGAGCGGGAGAGGGTCGACTGTCACCCC
GAGGGGAAGGCCGCGAGGGCTCGGTGCGAGGCGCGGGGCTGCTGCTGGAG
CCCGGCGGCCACCCAGGGCCCGCCCAGCTGCTTCTACCCGACGAACCACG
GCTACGAGGTGGACGGGGAGGTGGCGAAGACGGCGTCGGGCTACAGGGCC
AGGCTGCGCCGACTGAAGAGCCCGACCATGTACGGTGGCGATGTGGAGAC
CGTAGAACTGCTGGTAGAAATGCAGGAAGAGCACAGACTGCACGTAAAGA
TCTTAGAGCCAGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCCCTGCGG
GTCCCCAGACCCGGGCAGGCGGCGGACAGCCCCATGTATGACGTCACCTT
CACTCATCGGCCCTTCAGCTTCAAGGTCACCAGGAGGAGCACCGGGGCAA
CAATATTCGACACGTCCGTGGGTAAGCTGACGTTTGGAGACCAGTTCCTG
TCTGTGTCCACCCGGCTGGCCAGTTCTAACCTGTACGGACTGGGGGAGCA
CGTCCACAGGCGCTACAGGCACGACCTCAACTGGAAAACATGGCCCATCT
TCGCCAGCGGCGCAAACCCATTTGGGAACTACGAGAACCTGTACGGCCAC
CACCCGTTCTACATGTGTCTGGAGGATGACGGGAAGGCAAATGGCGTCAT
GCTCCTCAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000011 | genome | Sc0000011:1619959..1622492 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97483_cuf3 |
| Biotype | protein_coding |
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