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transcript:BL97483_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97483_cuf3
Unique Nametranscript:BL97483_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97483_cuf3

>transcript:BL97483_cuf3-protein ID=transcript:BL97483_cuf3-protein|Name=transcript:BL97483_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=244bp
LTRTDRLDPVCPAMDERERVDCHPEGKAARARCEARGCCWSPAATQGPPS
CFYPTNHGYEVDGEVAKTASGYRARLRRLKSPTMYGGDVETVELLVEMQE
EHRLHVKILEPAEARYEVPEAALRVPRPGQAADSPMYDVTFTHRPFSFKV
TRRSTGATIFDTSVGKLTFGDQFLSVSTRLASSNLYGLGEHVHRRYRHDL
NWKTWPIFASGANPFGNYENLYGHHPFYMCLEDDGKANGVMLLN
Run BLAST on NCBI

mRNA from alignment at Sc0000011:1619959..1622492-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97483_cuf3 ID=transcript:BL97483_cuf3|Name=transcript:BL97483_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2534bp|location=Sequence derived from alignment at Sc0000011:1619959..1622492- (Branchiostoma lanceolatum)
TGCTGACCAGGACGGACCGCCTCGACCCCGTGTGTCCCGCCATGGACGAG CGGGAGAGGGTCGACTGTCACCCCGAGGGGAAGGCCGCGAGGGCTCGGTG CGAGGCGCGGGGCTGCTGCTGGAGCCCGGCGGCCACCCAGGGCCCGCCCA GCTGCTTCTACCCGACGAACCACGGCTACGAGGTGGACGGGGAGGTGGCG AAGACGGCGTCGGGCTACAGGGCCAGGCTGCGCCGACTGAAGAGCCCGAC CATGTACGGTGGCGATGTGGAGACCGTAGAACTGCTGGTAGAAATGCAGG AAGAGCACAGACTGCACGTAAAGGTTTGTACTTCCCTTTACTTTGTAAAT TTTTGGTGCTGTATAACTTAAGTCATTGCAATTCTATATCTTGTAATGCA CTGAAAAGAAATGTACCGTAGTATGTATGGAAGACCCCAGAACGATTGAT ATACCAATCGATCAATCAATCGTTCGCAGGCATCAATGTCTGAACGATTG ATATACCAACCTCCGAATTCTTATCCAGTTGTAGAGTTTGAATTCTCTTT ATATACTGTTTACCTGAATGTCTAATCTTCACAAACGAATTGATATACCA GCATACAATCAATTACTAATTAAACAGACATACGACCAAACGTAGGTCAT TTTGCTACAATGACCTAATTACACTTTATGTAGGCGGTAGAGACATGCAA GGTAAACACTCGTAACAAGTAAACTCTTACGATGTTAGAGTATCTAGTTA ATATTTCACACAATGACCCACTTGGTGTTAGGTTATCGACGCGGGTTTTC TTAGTTCAATATTTAGAAACGTTAACGTAAATGCACTCGAGGTGAACCCC CTGTTTACTTAATACATAACATATACCAGTCAGGACTGTATGGACACATG GTTCGAAAATATAATGCCACTTTGGCTAAATAGATATTTACAAATGTTAA CATCGTTGTATACTCGTGGTAAACCCCTTGTTTACTTAATAAGTTACATA TACCCACCTCAGGACATTAGCTGTGCAACCGAACCGTAACAACCCAACAC GTTTTGTCTACAGATCTTAGAGCCAGCCGAGGCCCGGTATGAGGTTCTTA AACCACAGGTTCTTATCTCTGTGCTTCTCCACAGATTTTAGACCCTGCCG AGGCCCGGTACGAGGTTCTTAAACCACAGGTTCTTATCTCTGTGCTTCTC CACAGATTTTAGACCCTGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCC CTGCGGGTCCCCAGACCCGGGCAGGCGGCGGACAGCCCCATGTATGACGT CACCTTCACTCATCGGCCCTTCAGCTTCAAGGTCACCAGGAGGAGCACCG GGGCAACAATGTCAGTCATCACGTCATGGTTCTATCTATAGATAAAGAAA GCACGACTAACTCACACAGTCCAAATGAAATCCTCGGTGTAACAGACCGC AGGCCACAATATATTGGTTGTCTACTGGGCAAATAAGAGAAACGACCAAG TTAACATCGCTTACAATCAAATATTCATTTCATGAGTAAAATAATTGTTG AATGCGCCTTAAGCTTACTCATACATATCTACTCTGAAAGGATGATGATA CCAATGTTATATAGTCTGCGTTACACAGTCTCTCACTGCCAGGGGCCACT TGGACACCTCTTCTTGGGGGTCGCAATGGCAGCTTGGAGCGTGATTTAAC CTGATAAACATTGAAATCTACCCGACAAGGTCCAGGTTTAACCATACAAC ATGGCGGACAGCTCTTACGTCATAGTCACGTGAGCGCAGACGTCTTATAC ATTGTCCTTACTGACGCCTATTTTACACGCCCAGATTCGACACGTCCGTG GGTAAGCTGACGTTTGGAGACCAGTTCCTGTCTGTGTCCACCCGGCTGGC CAGTTCTAACCTGTACGGACTGGGGGAGCACGTCCACAGGCGCTACAGGC ACGACCTCAACTGGAAAACATGGCCCATCTTCGCCAGCGGCGCAAACCCA TTTGGGGTAAGTGTTACCAAATTCTGTTATAAGGGGCAAATATGATATCT TTGTCGTTAGATAAACCGGTAATTGTGGAAGAAGTCGCAAATGGCGTATA GCTGTTGAACACTTAGCAACTTTTGTGTCTTGCCATTTTTAATGTATGCA GTCAAACCTGTAACGTTACCTGTACCTGTACTAGTGAACCGCCACTATAT ATATGTATTTATATATATAGGCACTCCTGGCCTCTATTACGTAGTTGCTT GACTATCCTATGTATAGTGGCAAACTGTCTACACCTATCTACTATGACCT AGTCCCTTGAAGGGTCCATAAAGACGGGTTGGATTGGTCAGCGAAGGGCG CAGCATACTGTCGGGATTGAGGAATCCACTTGTGTGATACCCCTTCTCAC GCGGCCAACTGTTTCAAATTCATGTTTTTTTGCTATTTGTTTGAACAGAA CTACGAGAACCTGTACGGCCACCACCCGTTCTACATGTGTCTGGAGGATG ACGGGAAGGCAAATGGCGTCATGCTCCTCAACAG

Coding sequence (CDS) from alignment at Sc0000011:1619959..1622492-

>transcript:BL97483_cuf3 ID=transcript:BL97483_cuf3|Name=transcript:BL97483_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3660bp|location=Sequence derived from alignment at Sc0000011:1619959..1622492- (Branchiostoma lanceolatum)
CTGACCAGGACGGACCGCCTCGACCCCGTGTGTCCCGCCATGGACGAGCG
GGAGAGGGTCGACTGTCACCCCGAGGGGAAGGCCGCGAGGGCTCGGTGCG
AGGCGCGGGGCTGCTGCTGGAGCCCGGCGGCCACCCAGGGCCCGCCCAGC
TGCTTCTACCCGACGAACCACGGCTACGAGGTGGACGGGGAGGTGGCGAA
GACGGCGTCGGGCTACAGGGCCAGGCTGCGCCGACTGAAGAGCCCGACCA
TGTACGGTGGCGATGTGGAGACCGTAGAACTGCTGGTAGAAATGCAGGAA
GAGCACAGACTGCACGTAAAGATCTTAGAGCCAGCCGAGGCCCGGTACGA
GGTGCCCGAGGCGGCCCTGCGGGTCCCCAGACCCGGGCAGGCGGCGGACA
GCCCCATGTATGACGTCACCTTCACTCATCGGCCCTTCAGCTTCAAGGTC
ACCAGGAGGAGCACCGGGGCAACAATATTCGACACGTCCGTGGGTAAGCT
GACGTTTGGAGACCAGTTCCTGTCTGTGTCCACCCGGCTGGCCAGTTCTA
ACCTGTACGGACTGGGGGAGCACGTCCACAGGCGCTACAGGCACGACCTC
AACTGGAAAACATGGCCCATCTTCGCCAGCGGCGCAAACCCATTTGGGAA
CTACGAGAACCTGTACGGCCACCACCCGTTCTACATGTGTCTGGAGGATG
ACGGGAAGGCAAATGGCGTCATGCTCCTCAACCTGACCAGGACGGACCGC
CTCGACCCCGTGTGTCCCGCCATGGACGAGCGGGAGAGGGTCGACTGTCA
CCCCGAGGGGAAGGCCGCGAGGGCTCGGTGCGAGGCGCGGGGCTGCTGCT
GGAGCCCGGCGGCCACCCAGGGCCCGCCCAGCTGCTTCTACCCGACGAAC
CACGGCTACGAGGTGGACGGGGAGGTGGCGAAGACGGCGTCGGGCTACAG
GGCCAGGCTGCGCCGACTGAAGAGCCCGACCATGTACGGTGGCGATGTGG
AGACCGTAGAACTGCTGGTAGAAATGCAGGAAGAGCACAGACTGCACGTA
AAGATCTTAGAGCCAGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCCCT
GCGGGTCCCCAGACCCGGGCAGGCGGCGGACAGCCCCATGTATGACGTCA
CCTTCACTCATCGGCCCTTCAGCTTCAAGGTCACCAGGAGGAGCACCGGG
GCAACAATATTCGACACGTCCGTGGGTAAGCTGACGTTTGGAGACCAGTT
CCTGTCTGTGTCCACCCGGCTGGCCAGTTCTAACCTGTACGGACTGGGGG
AGCACGTCCACAGGCGCTACAGGCACGACCTCAACTGGAAAACATGGCCC
ATCTTCGCCAGCGGCGCAAACCCATTTGGGAACTACGAGAACCTGTACGG
CCACCACCCGTTCTACATGTGTCTGGAGGATGACGGGAAGGCAAATGGCG
TCATGCTCCTCAACCTGACCAGGACGGACCGCCTCGACCCCGTGTGTCCC
GCCATGGACGAGCGGGAGAGGGTCGACTGTCACCCCGAGGGGAAGGCCGC
GAGGGCTCGGTGCGAGGCGCGGGGCTGCTGCTGGAGCCCGGCGGCCACCC
AGGGCCCGCCCAGCTGCTTCTACCCGACGAACCACGGCTACGAGGTGGAC
GGGGAGGTGGCGAAGACGGCGTCGGGCTACAGGGCCAGGCTGCGCCGACT
GAAGAGCCCGACCATGTACGGTGGCGATGTGGAGACCGTAGAACTGCTGG
TAGAAATGCAGGAAGAGCACAGACTGCACGTAAAGATCTTAGAGCCAGCC
GAGGCCCGGTACGAGGTGCCCGAGGCGGCCCTGCGGGTCCCCAGACCCGG
GCAGGCGGCGGACAGCCCCATGTATGACGTCACCTTCACTCATCGGCCCT
TCAGCTTCAAGGTCACCAGGAGGAGCACCGGGGCAACAATATTCGACACG
TCCGTGGGTAAGCTGACGTTTGGAGACCAGTTCCTGTCTGTGTCCACCCG
GCTGGCCAGTTCTAACCTGTACGGACTGGGGGAGCACGTCCACAGGCGCT
ACAGGCACGACCTCAACTGGAAAACATGGCCCATCTTCGCCAGCGGCGCA
AACCCATTTGGGAACTACGAGAACCTGTACGGCCACCACCCGTTCTACAT
GTGTCTGGAGGATGACGGGAAGGCAAATGGCGTCATGCTCCTCAACCTGA
CCAGGACGGACCGCCTCGACCCCGTGTGTCCCGCCATGGACGAGCGGGAG
AGGGTCGACTGTCACCCCGAGGGGAAGGCCGCGAGGGCTCGGTGCGAGGC
GCGGGGCTGCTGCTGGAGCCCGGCGGCCACCCAGGGCCCGCCCAGCTGCT
TCTACCCGACGAACCACGGCTACGAGGTGGACGGGGAGGTGGCGAAGACG
GCGTCGGGCTACAGGGCCAGGCTGCGCCGACTGAAGAGCCCGACCATGTA
CGGTGGCGATGTGGAGACCGTAGAACTGCTGGTAGAAATGCAGGAAGAGC
ACAGACTGCACGTAAAGATCTTAGAGCCAGCCGAGGCCCGGTACGAGGTG
CCCGAGGCGGCCCTGCGGGTCCCCAGACCCGGGCAGGCGGCGGACAGCCC
CATGTATGACGTCACCTTCACTCATCGGCCCTTCAGCTTCAAGGTCACCA
GGAGGAGCACCGGGGCAACAATATTCGACACGTCCGTGGGTAAGCTGACG
TTTGGAGACCAGTTCCTGTCTGTGTCCACCCGGCTGGCCAGTTCTAACCT
GTACGGACTGGGGGAGCACGTCCACAGGCGCTACAGGCACGACCTCAACT
GGAAAACATGGCCCATCTTCGCCAGCGGCGCAAACCCATTTGGGAACTAC
GAGAACCTGTACGGCCACCACCCGTTCTACATGTGTCTGGAGGATGACGG
GAAGGCAAATGGCGTCATGCTCCTCAACCTGACCAGGACGGACCGCCTCG
ACCCCGTGTGTCCCGCCATGGACGAGCGGGAGAGGGTCGACTGTCACCCC
GAGGGGAAGGCCGCGAGGGCTCGGTGCGAGGCGCGGGGCTGCTGCTGGAG
CCCGGCGGCCACCCAGGGCCCGCCCAGCTGCTTCTACCCGACGAACCACG
GCTACGAGGTGGACGGGGAGGTGGCGAAGACGGCGTCGGGCTACAGGGCC
AGGCTGCGCCGACTGAAGAGCCCGACCATGTACGGTGGCGATGTGGAGAC
CGTAGAACTGCTGGTAGAAATGCAGGAAGAGCACAGACTGCACGTAAAGA
TCTTAGAGCCAGCCGAGGCCCGGTACGAGGTGCCCGAGGCGGCCCTGCGG
GTCCCCAGACCCGGGCAGGCGGCGGACAGCCCCATGTATGACGTCACCTT
CACTCATCGGCCCTTCAGCTTCAAGGTCACCAGGAGGAGCACCGGGGCAA
CAATATTCGACACGTCCGTGGGTAAGCTGACGTTTGGAGACCAGTTCCTG
TCTGTGTCCACCCGGCTGGCCAGTTCTAACCTGTACGGACTGGGGGAGCA
CGTCCACAGGCGCTACAGGCACGACCTCAACTGGAAAACATGGCCCATCT
TCGCCAGCGGCGCAAACCCATTTGGGAACTACGAGAACCTGTACGGCCAC
CACCCGTTCTACATGTGTCTGGAGGATGACGGGAAGGCAAATGGCGTCAT
GCTCCTCAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97483gene:BL97483Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97483_cuf3transcript:BL97483_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97483_cuf3-E1BL97483_cuf3-E1-1564476830-102434Branchiostoma lanceolatumexon
BL97483_cuf3-E2BL97483_cuf3-E2-1564476830-102431Branchiostoma lanceolatumexon
BL97483_cuf3-E3BL97483_cuf3-E3-1564476830-102429Branchiostoma lanceolatumexon
BL97483_cuf3-E4BL97483_cuf3-E4-1564476830-102427Branchiostoma lanceolatumexon
BL97483_cuf3-E5BL97483_cuf3-E5-1564476830-102425Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:1619959..1622492 -
Properties
Property NameValue
Transcript idBL97483_cuf3
Biotypeprotein_coding