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transcript:BL97480_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97480_cuf3
Unique Nametranscript:BL97480_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97480_cuf3

>transcript:BL97480_cuf3-protein ID=transcript:BL97480_cuf3-protein|Name=transcript:BL97480_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
HYDIWTGTYSQLLSLYTPSIVFDGLYVFVCLCVCVFVCLSVTMCSRYDVW
TGTWLRMKSMHEKRAHFHLSALGGRLYAVGGRNKEQNLKSVEAFLPRENR
WMYVAPLRGYSTGHAGCVCDGKLYTSGGYGTSMNNVPHERVLQFYDPEQN
AWQCRAPMTTGRIWHCMATLGDKLYVMGGDIGDARLHVLTAESYCPASDQ
WTAIAPMLTGQSEAGVAVIDDKIFLLGGYDWNNRDVIGSSQSYRPEDNIW
RREASLPQAAAGVACCVVRLPTRYSRMAED
Run BLAST on NCBI

mRNA from alignment at Sc0000011:1514486..1519528+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97480_cuf3 ID=transcript:BL97480_cuf3|Name=transcript:BL97480_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5043bp|location=Sequence derived from alignment at Sc0000011:1514486..1519528+ (Branchiostoma lanceolatum)
CACTATGACATATGGACAGGTACATACAGTCAGCTACTCTCTTTATACAC TCCAAGTATTGTTTTTGATGGGCTATATGTCTTTGTGTGTCTGTGTGTGT GCGTGTTTGTCTGTCTGTCTGTGACCATGTGCTCTCGCTACGACGTATGG ACAGGTACGGACATTGAGCTGCTTCTTTGTATTGTTATCTGTTCTGTGTG TGCATAAGAACCCACACACTTATCTATAACAGTAGGCATGTGCCCCGGTA TGAGGATACATGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAG GGGTGGGTACCGGTACCGTGTACCGGTACAAAACCGGTATTTCTTAATGG ACCGGTCCAAAAAAAACGGTCCGTAAAAAATCAGTGGACCGGCCTATGGA CCGATTAGAAAATTCATAGTACCAGGCTACCAGCAGGCGGCCACATAACT GGTCTAAGAAAATACAAAACAGCAGATTTAACGAGTCGTTTTCGAAGACG TTAGCTGTGAATCATATCTAGAAACACTTAAAGGATGAGTTAACAGACAG CGAGGAGAGTATAGTTATAATTTTGAGACAAAGTGCAAACCTAAGAAATT ATATCGTTCCAGACTTGACGTTTATTTGGAGACTTTTACGTGTGTCTCGC TCTCCAAAATATGATGTACTGCGACACTACTATAATCAGGTACAGGTACA GGTCCGGACCTGGACCTGACCCTCTGGACCTGGACCTGGACCGGACCTNT ACAAGTCCGGACCTGGACCTGACCCCCTGGACCTGGACCTAGGACCTGGA CCGGACCTGAATTTTATGTACCGGTACCCACCCCTAGTGGGGGTTCTTTT TGTGTTCCAAGGTGTGGTTTTCCTTAAACACATGCAGGAACTCTGACTTA ACATCATCTTTCCTTAATATCTAAACCCTTTTTATTTTCTTATCTTGAAG GCACGTGGCTGCGGATGAAGTCCATGCACGAGAAGCGGGCGCACTTCCAC CTTAGCGCGCTAGGGGGCAGGCTTTACGCCGTCGGTGGAAGGAACAAGGA ACAGAACCTCAAGTCTGTGGAGGCCTTCCTTCCGAGGGAGAACAGGTGAC TGCGTTTTCTTAAGATTCAGAAGTCTGGATTCCTTGGTTCCTCAGAGTAA AGATTGAGCAAGCTGACAGGACGAAAACAGTCATGAATTGTTTGGAACAG GTTGGTTAGTTGGAAGTTTGGAAGAAAACGTGCTGCCCTTTTTGCCGCTA GGCACTACAAGGTGAACAACAACAAGTAATGATTGGTCAATTGGTTTATT GATTGATTGATGTATTGGTTGATCAATTGACAGATGGATGTACACCCAGT GCATTTTCATAGACAAGCTTGACCAAAACTTAGACATGTATTGCCTACTC ATTAGATGATTGATTGATTGATGTATTGATTGATGTATTGACAGATGGAT GTACGTGGCGCCTCTACGCGGGTACAGTACGGGTCACGCAGGGTGCGTCT GCGACGGGAAGCTCTACACCAGCGGTGGCTACGGGACCTCCATGAACAAC GTGCCCCACGAACGCGTTCTACAGTTCTACGACCCCGAACAGAACGCCTG GCAGTGCCGTGCGCCCATGACGACCGGGCGCATCTGGCACTGCATGGCGA CGCTCGGAGACAAACTCTACGTAATGGGCGGAGACATCGGCGACGCGAGA CTTCACGTTCTAACTGCGGAATCGTACTGCCCGGCCTCAGACCAATGGAC AGCCATCGCGCCGATGCTCACGGGACAGAGCGAAGCGGGCGTGGCGGTTA TAGACGATAAAATCTTCCTCTTGGGAGGTTACGATTGGAACAATAGGGAC GTGATCGGCAGTTCACAGTCGTACAGGCCGGAGGATAATATATGGAGACG GGAGGCGAGCCTACCTCAGGCCGCGGCAGGAGTCGCGTGTTGTGTCGTGA GACTACCGACAAGATACTCCCGTATGGCGGAGGATTGAGGAACCAAGAAA GGGGAGAAATCTTTAAGAAATGACAAGTTAGTTAAGAAATGTTTAATGTT GTTCCTTGGATAAGATTTTGTCAGGCCGTGTTTATTTGTTTACAAGGATG ACACCCATGCAGGTTTTGTCTGTTTCCCCCACAAAAAAAGTTTTCCACCA TACAAAGCAGCTGCAAAAATGAGCAAATACTTGCCATATATTGCAAAAAA ATATTGGGATTTGGATACTGATGTTATAGAATGCAAAAGTCCATTCCAAA ATCAAAGAAGAATCTATTGTTCTGTATACCGTACTCTGTGTGCATTTGCT CAACCTTTTTTCGCATACATCCATTAGTTTTTGAAGATGTCATCCATGTA ATCAAATCAACATGGCCTAACTACAAGGGGTAGATGGTAGATACATGTAC TTAAGAAATGTTATTAAAGATTAGATAAGACTTTATTACTTAAATTTAAT AATATAAACTTTAAGATGTATTACTATTCGGATAAGGTTTTGCTAATCAA AGATATTCAACGTAGATATTCAAGAACTATAAATAATCATAATTACACTT AGCAGGTAGATGGTTAAGAAATGTTGAATGTAGTTTGGTCTCATTTTTCT CAAAGAGAAATGTTGTTTTACTTCATTCTAGAGCTTTAACCCTAACCCTC CTAACTTCTGCTGTTACTGATTCAAATTTGGTTCATGAATGTTTGCCAAG CATAGAGAAGGTTAAAAGATGATATTGTATCATCCTCAAGAAGACCAATT ACAAAATGTTTTGTGAAAACATATTCCAGAACTTCGAATTTTCCAAGCAG ATAGCTTTGTAATGTTGTGTTCTATATTTATATGCCTTGTATCTTTTTAC GTAGCTATTTGATCAAAACCTGCACTTAGTGCACTCGCTTTTTCACTCAC TCACTTATTCATTCACTCACTCACTCACTGTCTCATTCTCTCACTCCATC AAGTTCATTCAAAACCATTCCATAACTTAATGATTTCCATGTATTTCCTT CCTTCATTCCAGCAACTATTGAATTTCCGTCCACATTTTCATCATGTGTA AGTTTGTTGATGACATTTGTAGTGTTTTCCTTGGCCTTCTTTGGCTTCTT TTTTCATTTGTTATCTCCAGCAATGTTAGCTTATTTATGTATGATCTCAG CCTAGTTCTTCTTTAGCAGTATTTGTTGTCTTTTTATCATACGTAGGTAT TAAGAGGCTTTAGATGTTACTTTTAGTCAACATTTTTGCAATCTGGTAGG TTTTATAACTGTCCTAATGTTAGGTAGATAGGCATTGGGAATTTCTTCAA AGTGAAAAAAAAAATATTTATCCGGTTCTTCTAACTGCTGCTAAGGACTA AGCTTAAAGGAGACAAAACAATATTTGAAATTTGTACAATGTTAAAAAGC TGCAGTCTTGTATAGCCCTGCAATATATGATAAATAACTTTTGCAGCTTT TAATAGTCAAAATAAGGCCATCCCAATTGTATTTCTCGTTTAACCTATTT CACTATGTTTTAAAAAGATAATCACATGTATCATTCAGAAGCTATATCAA TCCAGAAAATGGTCATAGTTAAACCAACAATCGGAAAACGCAAAAATTGG AAATTTTGTGTGGTATACAGGCTATAGGAGATTCTTTTTAAACAGCAATC TGACCTGCTAATGTTTTGGATACAAACTTAGCCACGTTTGGGACAGTGTT CTCACCTCAAAAGCACCACCTACATCGGCTACTTACAGCGGTGAGAAGCA GTACTCCAGTCAGAAGCTCTGAAGAAGGTGTCTGATAGACACTGAAAAGT TAGCAGGTGAGATTACCTGGTTGTGTAAAAAGAGTCTCCTATACCCTATA TTCTACTAGCCTGGATACCAGACCCCCAATCTCTAAAATATATATACTCG ATATATTTTTTAGAGATTGGGGGTCTGGTATCCAGGCTAATATTCTACCA ACCTGATGAAATTATTTTGGGGTGTGGTATTCAGTTGGAAGAAAAAGCTG CCCATTATGTAAAGCTTGCTGCTGTAGTCATTTGTTTTAATTAAGAAATG ATATATAAGACCAATTTTTCTATGAGGTTTATAAATGTTGTGTACATATC CTAACTTATATATGTTATTTGTGTCGAAGACACAGTTAGTACATGTTTTA CCTTACATTTAATGGTCAATTCTGATACCCTGGAGCAAGGACATTCCTAT ATAATGTCCTTGCCTGGAGACAGACCGATTATACTGGACATGTTTTCAGA AATATGACCAAATTGAGTGTGTTTGTTTGTCTGTCTGTTTGTATTGTATA CCCAGTAAACTGCCTCATGGCATAACACAGCAGGTTTTTATTGAACAGTA CAAGCTGCATATCCGGACAGATTTGTTTGATCCACTCACACCAGGAAGGA CCCCTGTTCTTTTCGAAATGTGTGGTGGATTCTTTTACATGCTCGAGGTG TGGCTCTCCTCAAACATGACCATGATGTGTTTTAGGTATGCATGTGAAGT CGTTATGTGGGCAACATTACAAAGGATTCATTTCCATTTACCTGTATTTT TGCCTCTGCATGTTTATGAAGACTAGACCAAATTTGGAAAAACGTTTTCC AAGGTTTTAAAGGCCACAGTTTGAATGTCAGGAAATGACTATACAGTGGT CAGATTCCTATTGAAATTTTTTAAACAATGTTTGACATGAGAAATAAACA TTTGCTGTTTCGAATTTGGAAGAACTTCTCACAAGTTTAAAATGTCACAT TTTAAAGACCGTTACAGTTATGATACCACTGGAATTGCCAATGGCTTATT GAGGCACTATTGGCTACTCCCGCGAGGTGTCGCCAAAAGCGTTTCCATTT TGTGAATGATCCAAATAAAGCTGCTTCTGTTATTGACTTTGACCATGTGT CCAACTTTGTCTTAAACTACTACTTCCTCCAATGTTAAGTTAGTTAAAGT ATCCCAAACATCTTCATTAGACGCATAGGGGTGGCGCCCATCTCCATTTC TATAGCCCTTAAGCCACACATTTGTGCAAGTCACTACAGCAGG

Coding sequence (CDS) from alignment at Sc0000011:1514486..1519528+

>transcript:BL97480_cuf3 ID=transcript:BL97480_cuf3|Name=transcript:BL97480_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2529bp|location=Sequence derived from alignment at Sc0000011:1514486..1519528+ (Branchiostoma lanceolatum)
CACTATGACATATGGACAGGTACATACAGTCAGCTACTCTCTTTATACAC
TCCAAGTATTGTTTTTGATGGGCTATATGTCTTTGTGTGTCTGTGTGTGT
GCGTGTTTGTCTGTCTGTCTGTGACCATGTGCTCTCGCTACGACGTATGG
ACAGGCACGTGGCTGCGGATGAAGTCCATGCACGAGAAGCGGGCGCACTT
CCACCTTAGCGCGCTAGGGGGCAGGCTTTACGCCGTCGGTGGAAGGAACA
AGGAACAGAACCTCAAGTCTGTGGAGGCCTTCCTTCCGAGGGAGAACAGA
TGGATGTACGTGGCGCCTCTACGCGGGTACAGTACGGGTCACGCAGGGTG
CGTCTGCGACGGGAAGCTCTACACCAGCGGTGGCTACGGGACCTCCATGA
ACAACGTGCCCCACGAACGCGTTCTACAGTTCTACGACCCCGAACAGAAC
GCCTGGCAGTGCCGTGCGCCCATGACGACCGGGCGCATCTGGCACTGCAT
GGCGACGCTCGGAGACAAACTCTACGTAATGGGCGGAGACATCGGCGACG
CGAGACTTCACGTTCTAACTGCGGAATCGTACTGCCCGGCCTCAGACCAA
TGGACAGCCATCGCGCCGATGCTCACGGGACAGAGCGAAGCGGGCGTGGC
GGTTATAGACGATAAAATCTTCCTCTTGGGAGGTTACGATTGGAACAATA
GGGACGTGATCGGCAGTTCACAGTCGTACAGGCCGGAGGATAATATATGG
AGACGGGAGGCGAGCCTACCTCAGGCCGCGGCAGGAGTCGCGTGTTGTGT
CGTGAGACTACCGACAAGATACTCCCGTATGGCGGAGGATTGACACTATG
ACATATGGACAGGTACATACAGTCAGCTACTCTCTTTATACACTCCAAGT
ATTGTTTTTGATGGGCTATATGTCTTTGTGTGTCTGTGTGTGTGCGTGTT
TGTCTGTCTGTCTGTGACCATGTGCTCTCGCTACGACGTATGGACAGGCA
CGTGGCTGCGGATGAAGTCCATGCACGAGAAGCGGGCGCACTTCCACCTT
AGCGCGCTAGGGGGCAGGCTTTACGCCGTCGGTGGAAGGAACAAGGAACA
GAACCTCAAGTCTGTGGAGGCCTTCCTTCCGAGGGAGAACAGATGGATGT
ACGTGGCGCCTCTACGCGGGTACAGTACGGGTCACGCAGGGTGCGTCTGC
GACGGGAAGCTCTACACCAGCGGTGGCTACGGGACCTCCATGAACAACGT
GCCCCACGAACGCGTTCTACAGTTCTACGACCCCGAACAGAACGCCTGGC
AGTGCCGTGCGCCCATGACGACCGGGCGCATCTGGCACTGCATGGCGACG
CTCGGAGACAAACTCTACGTAATGGGCGGAGACATCGGCGACGCGAGACT
TCACGTTCTAACTGCGGAATCGTACTGCCCGGCCTCAGACCAATGGACAG
CCATCGCGCCGATGCTCACGGGACAGAGCGAAGCGGGCGTGGCGGTTATA
GACGATAAAATCTTCCTCTTGGGAGGTTACGATTGGAACAATAGGGACGT
GATCGGCAGTTCACAGTCGTACAGGCCGGAGGATAATATATGGAGACGGG
AGGCGAGCCTACCTCAGGCCGCGGCAGGAGTCGCGTGTTGTGTCGTGAGA
CTACCGACAAGATACTCCCGTATGGCGGAGGATTGACACTATGACATATG
GACAGGTACATACAGTCAGCTACTCTCTTTATACACTCCAAGTATTGTTT
TTGATGGGCTATATGTCTTTGTGTGTCTGTGTGTGTGCGTGTTTGTCTGT
CTGTCTGTGACCATGTGCTCTCGCTACGACGTATGGACAGGCACGTGGCT
GCGGATGAAGTCCATGCACGAGAAGCGGGCGCACTTCCACCTTAGCGCGC
TAGGGGGCAGGCTTTACGCCGTCGGTGGAAGGAACAAGGAACAGAACCTC
AAGTCTGTGGAGGCCTTCCTTCCGAGGGAGAACAGATGGATGTACGTGGC
GCCTCTACGCGGGTACAGTACGGGTCACGCAGGGTGCGTCTGCGACGGGA
AGCTCTACACCAGCGGTGGCTACGGGACCTCCATGAACAACGTGCCCCAC
GAACGCGTTCTACAGTTCTACGACCCCGAACAGAACGCCTGGCAGTGCCG
TGCGCCCATGACGACCGGGCGCATCTGGCACTGCATGGCGACGCTCGGAG
ACAAACTCTACGTAATGGGCGGAGACATCGGCGACGCGAGACTTCACGTT
CTAACTGCGGAATCGTACTGCCCGGCCTCAGACCAATGGACAGCCATCGC
GCCGATGCTCACGGGACAGAGCGAAGCGGGCGTGGCGGTTATAGACGATA
AAATCTTCCTCTTGGGAGGTTACGATTGGAACAATAGGGACGTGATCGGC
AGTTCACAGTCGTACAGGCCGGAGGATAATATATGGAGACGGGAGGCGAG
CCTACCTCAGGCCGCGGCAGGAGTCGCGTGTTGTGTCGTGAGACTACCGA
CAAGATACTCCCGTATGGCGGAGGATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97480gene:BL97480Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97480_cuf3-E1BL97480_cuf3-E1-1564476830-102227Branchiostoma lanceolatumexon
BL97480_cuf3-E2BL97480_cuf3-E2-1564476830-102229Branchiostoma lanceolatumexon
BL97480_cuf3-E3BL97480_cuf3-E3-1564476830-102232Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97480_cuf3transcript:BL97480_cuf3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:1514486..1519528 +
Properties
Property NameValue
Transcript idBL97480_cuf3
Biotypeprotein_coding