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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97470_cuf5 >transcript:BL97470_cuf5-protein ID=transcript:BL97470_cuf5-protein|Name=transcript:BL97470_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=262bp
IITRANFVGTGQYSGHWLGDNKSAWEDMEWSITGMLEFGLFGIPYIGADI
CGFLLDTTEQLCQRWMQLGAFYPYSRNHNHNDFIDQDPAVFSQSMIDSSR
DVMMTRYTLLPYLYTLFYHAHVAGTTVVRPLLHEFPTDSNTWDVDRQFLW
GSGLLISPVLTPDTTTVDAYFPDTPWYDYFTGQEVEGQYRGQTVTLDAPL
DKINVHVRGGVILPTQQPANTTVYSRKNPMGLLVAMDDSSAASGTLFWDD
GESIDSIERQDY Run BLAST on NCBI mRNA from alignment at Sc0000011:1591004..1594007+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97470_cuf5 ID=transcript:BL97470_cuf5|Name=transcript:BL97470_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3004bp|location=Sequence derived from alignment at Sc0000011:1591004..1594007+ (Branchiostoma lanceolatum)
CATCATCACCCGGGCTAACTTCGTGGGGACGGGACAGTACTCCGGGCACT
GGCTGGGCGATAACAAGTCCGCATGGGAGGACATGGAGTGGTCCATCACG
GGTAAGGTGTCATGTTCTTACAAGATATTTATGGATTTATCACAAACATT
TAATGGGAATAGCTCTATAGGATGCTAAGAGAAGGGTGTTGTGTATCGTA
AAATCTTGTTGGAACAACTCTAGTCTGAAATTGTCACATTCAATTTCCTC
ATTTTAGGACGGAAATGTAAAGTGTAACGTACACTTTTGGTAGTTTTTCT
CAGAATGGTATCTCCTACTATCATTAGCCACTCAAGTTTTGTTTTGTTAT
ATTTTTTTTACAGGAATGCTAGAGTTCGGACTATTTGGAATACCCTACGT
AAGTGTCACCCTCTGTTGGGACATTCATGGACAATTTTGTTGTTCAACTT
TTTAAAGCAAAATCGAATATTACACGAATGGTCTTATCAATTTTTAAACA
TTCGACACTGTGTTTTGTTCGTCCACGAAAACAGATACAATTTGCTTGCC
AAGCAGTATTCATAACTTAACTCTTCCATACTTCAGATCGGAGCCGACAT
CTGCGGTTTTCTCCTGGACACGACGGAGCAGCTGTGCCAGCGGTGGATGC
AGCTCGGCGCATTCTATCCCTACTCACGCAACCACAACCACAACGACTTC
ATAGTACGTTCCTTTACTTGCTTCTTTGTTGGTGCGTGTGCGCTGGGGTT
TTAGTATGGGTGTTTGGTGGTAAAATAACCTTGCCTTAGCACCTTAGTTC
CTCCCGTGCCTTTGAGGCACATCTTTTCCACCTGCCTCGCTGTTGTGCTT
CGCTCTTTGCCCTGTACCAGAAGCTTCCAGTGGCTTCAATGTCCTTCTCT
ACGTTTGCTTTCCGTGTCGGTCTGGGCCTTCCCTTGTTTCCTTTTCCACC
AAGTGGCTTACAATGCATCCATGACAAAATGTATATGAAACAAGTAAGTT
TTGAGTTTTGGTACAAAATGTTCATGTTACAATGTCCCGTAACCCCGTCG
ACGATGCGTTTTAACCAGGAGCCTGTCATCATCATCATCAACGTCTCTTG
TTAGTGTTACCGCCATTGTCTTCCACGGGATTCTGTAGTAGCACGAATAA
CGTCATGGATTTTGTAAGAATTTAAGAGGATCACGTTAGAATGACAGTAG
GCACAGTTTTTTTTCCGTGTTTGGTTTTCTAAACCTGGATTTCTGTTCCT
CAAACACAGGACCAGGACCCGGCTGTCTTCAGTCAGAGCATGATTGACTC
CTCCCGTGACGTCATGATGACGCGCTACACCCTGCTGCCCTACCTGTACA
CGCTGTTCTACCACGCCCACGTTGCCGGGACAACGGTTGTCAGGCCACTC
CTACACGAGTAAGACACACTCGTGACACTATGTTTCTGGTCCTTTTCGGC
TTGAGTATGTTTCCCCAAAGTTCAAGCTTCTTTTTTAATCTTTCTTAGTG
GGTCCGGATGTCTAACTTAACAAAAGAATCAATCAATAACAGAGCTTAGG
AGATGTAAGAATATCTTAACGATATCTTAACTTTTCCAGGTTCCCTACCG
ACTCCAACACGTGGGACGTGGACCGACAGTTTCTCTGGGGCAGCGGGCTG
CTCATCTCTCCTGTACTAACTCCGGTAGGAGACCTTTTTTATTTTGCCAT
TTTGCTTTCATTTGATAAAGTCAATCCTTGATAGCTACAGAATACCATAA
GAAAAGTTTATCATTTTTCTATTTTTTCTTTGAAAAAAAAAATTGTCAGA
AGTTAAACTTCGATACATATGGAGTGTATCAAAGTACTGTTTTTTGACAA
TCATACTGTGACAACCATACGGTAGTCGTTGTTCCGGATGTTTTAATCAA
AACTCCAGTGACCCACAATATGCTATACCTATCACCTACAGGACACCACT
ACCGTGGACGCGTATTTCCCTGACACTCCCTGGTACGACTATTTCACGGT
AAGCAGGAATTTGAAATCAAATACATGCCAACCGTCTACCGGAATGAAAA
TGTATAATAGTGTCNACATACCAACCGTCTACCGGAATGAAAATGTATAA
TAGTGTCAAAGTTAGACTCTGTTTGTCTGGCGTTATATTTGTTATATTTC
TCATCACTTAATTGTAACGATCTCGATTCCCAACATTGACACCATGTATC
AAGCAAGGTAAGTACAAAACACGTAATACTTACTAATAGTATTTTCAAAC
GTTTTACAGGGTCAAGAAGTCGAAGGTCAATACAGAGGTCAGACGGTGAC
CCTGGATGCTCCGCTGGACAAGATCAACGTCCATGTTCGAGGAGGTGTGA
TTCTGCCTACTCAGCAGCCTGCTAATACAACCGTGTACAGGTATACATGT
GTTTCCGCACATGCCGATAGTTAGCCATTACGGTATCGGTCACTGTAGTG
ATTATGAAAACGCATTGCGGTGTTCCAGCCTGTAACGTTCAAGTCTCAAA
TTTCTGCTTTCATGCTATATATATCAAGTTCCATTCTGCTAAATAAATCT
ACTGTTATCTAAAATGTCTCAAGAGTTCGATGAATCCACTCTTTAAGTGT
GTAAAACGGTAATCGAGCTTTAATGCAATCAAGATAAACGTATTTGAGTG
GCCTGGAACGACAACAGTTTGCAATAGTGCTGATAGGTCACTTCATGAGA
GCAACTTGATTTGTAAGTATTATTTTCCCCTCAGCCGGAAGAATCCGATG
GGTCTGCTGGTTGCCATGGACGACTCGTCTGCAGCATCCGGGACATTGTT
CTGGGACGACGGAGAGTCTATCGGTAAAGTCAACTGATTCTAGACATTGA
ATTAGATAGCGAAATTTGTAAAAGTTAGTCTATTGCACTCTCTTAACCGG
TCATGCATTCTTTGCCTTTTAACTGACTGTACTTCCTACTTTCGACATTT
CCATGACTTTTTGCATGGTTTGTACATATAGATTCCATAGAACGCCAAGA
CTAC Coding sequence (CDS) from alignment at Sc0000011:1591004..1594007+ >transcript:BL97470_cuf5 ID=transcript:BL97470_cuf5|Name=transcript:BL97470_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=7074bp|location=Sequence derived from alignment at Sc0000011:1591004..1594007+ (Branchiostoma lanceolatum)
ATCATCACCCGGGCTAACTTCGTGGGGACGGGACAGTACTCCGGGCACTG
GCTGGGCGATAACAAGTCCGCATGGGAGGACATGGAGTGGTCCATCACGG
GAATGCTAGAGTTCGGACTATTTGGAATACCCTACATCGGAGCCGACATC
TGCGGTTTTCTCCTGGACACGACGGAGCAGCTGTGCCAGCGGTGGATGCA
GCTCGGCGCATTCTATCCCTACTCACGCAACCACAACCACAACGACTTCA
TAGACCAGGACCCGGCTGTCTTCAGTCAGAGCATGATTGACTCCTCCCGT
GACGTCATGATGACGCGCTACACCCTGCTGCCCTACCTGTACACGCTGTT
CTACCACGCCCACGTTGCCGGGACAACGGTTGTCAGGCCACTCCTACACG
AGTTCCCTACCGACTCCAACACGTGGGACGTGGACCGACAGTTTCTCTGG
GGCAGCGGGCTGCTCATCTCTCCTGTACTAACTCCGGACACCACTACCGT
GGACGCGTATTTCCCTGACACTCCCTGGTACGACTATTTCACGGGTCAAG
AAGTCGAAGGTCAATACAGAGGTCAGACGGTGACCCTGGATGCTCCGCTG
GACAAGATCAACGTCCATGTTCGAGGAGGTGTGATTCTGCCTACTCAGCA
GCCTGCTAATACAACCGTGTACAGCCGGAAGAATCCGATGGGTCTGCTGG
TTGCCATGGACGACTCGTCTGCAGCATCCGGGACATTGTTCTGGGACGAC
GGAGAGTCTATCGATTCCATAGAACGCCAAGACTACATCATCACCCGGGC
TAACTTCGTGGGGACGGGACAGTACTCCGGGCACTGGCTGGGCGATAACA
AGTCCGCATGGGAGGACATGGAGTGGTCCATCACGGGAATGCTAGAGTTC
GGACTATTTGGAATACCCTACATCGGAGCCGACATCTGCGGTTTTCTCCT
GGACACGACGGAGCAGCTGTGCCAGCGGTGGATGCAGCTCGGCGCATTCT
ATCCCTACTCACGCAACCACAACCACAACGACTTCATAGACCAGGACCCG
GCTGTCTTCAGTCAGAGCATGATTGACTCCTCCCGTGACGTCATGATGAC
GCGCTACACCCTGCTGCCCTACCTGTACACGCTGTTCTACCACGCCCACG
TTGCCGGGACAACGGTTGTCAGGCCACTCCTACACGAGTTCCCTACCGAC
TCCAACACGTGGGACGTGGACCGACAGTTTCTCTGGGGCAGCGGGCTGCT
CATCTCTCCTGTACTAACTCCGGACACCACTACCGTGGACGCGTATTTCC
CTGACACTCCCTGGTACGACTATTTCACGGGTCAAGAAGTCGAAGGTCAA
TACAGAGGTCAGACGGTGACCCTGGATGCTCCGCTGGACAAGATCAACGT
CCATGTTCGAGGAGGTGTGATTCTGCCTACTCAGCAGCCTGCTAATACAA
CCGTGTACAGCCGGAAGAATCCGATGGGTCTGCTGGTTGCCATGGACGAC
TCGTCTGCAGCATCCGGGACATTGTTCTGGGACGACGGAGAGTCTATCGA
TTCCATAGAACGCCAAGACTACATCATCACCCGGGCTAACTTCGTGGGGA
CGGGACAGTACTCCGGGCACTGGCTGGGCGATAACAAGTCCGCATGGGAG
GACATGGAGTGGTCCATCACGGGAATGCTAGAGTTCGGACTATTTGGAAT
ACCCTACATCGGAGCCGACATCTGCGGTTTTCTCCTGGACACGACGGAGC
AGCTGTGCCAGCGGTGGATGCAGCTCGGCGCATTCTATCCCTACTCACGC
AACCACAACCACAACGACTTCATAGACCAGGACCCGGCTGTCTTCAGTCA
GAGCATGATTGACTCCTCCCGTGACGTCATGATGACGCGCTACACCCTGC
TGCCCTACCTGTACACGCTGTTCTACCACGCCCACGTTGCCGGGACAACG
GTTGTCAGGCCACTCCTACACGAGTTCCCTACCGACTCCAACACGTGGGA
CGTGGACCGACAGTTTCTCTGGGGCAGCGGGCTGCTCATCTCTCCTGTAC
TAACTCCGGACACCACTACCGTGGACGCGTATTTCCCTGACACTCCCTGG
TACGACTATTTCACGGGTCAAGAAGTCGAAGGTCAATACAGAGGTCAGAC
GGTGACCCTGGATGCTCCGCTGGACAAGATCAACGTCCATGTTCGAGGAG
GTGTGATTCTGCCTACTCAGCAGCCTGCTAATACAACCGTGTACAGCCGG
AAGAATCCGATGGGTCTGCTGGTTGCCATGGACGACTCGTCTGCAGCATC
CGGGACATTGTTCTGGGACGACGGAGAGTCTATCGATTCCATAGAACGCC
AAGACTACATCATCACCCGGGCTAACTTCGTGGGGACGGGACAGTACTCC
GGGCACTGGCTGGGCGATAACAAGTCCGCATGGGAGGACATGGAGTGGTC
CATCACGGGAATGCTAGAGTTCGGACTATTTGGAATACCCTACATCGGAG
CCGACATCTGCGGTTTTCTCCTGGACACGACGGAGCAGCTGTGCCAGCGG
TGGATGCAGCTCGGCGCATTCTATCCCTACTCACGCAACCACAACCACAA
CGACTTCATAGACCAGGACCCGGCTGTCTTCAGTCAGAGCATGATTGACT
CCTCCCGTGACGTCATGATGACGCGCTACACCCTGCTGCCCTACCTGTAC
ACGCTGTTCTACCACGCCCACGTTGCCGGGACAACGGTTGTCAGGCCACT
CCTACACGAGTTCCCTACCGACTCCAACACGTGGGACGTGGACCGACAGT
TTCTCTGGGGCAGCGGGCTGCTCATCTCTCCTGTACTAACTCCGGACACC
ACTACCGTGGACGCGTATTTCCCTGACACTCCCTGGTACGACTATTTCAC
GGGTCAAGAAGTCGAAGGTCAATACAGAGGTCAGACGGTGACCCTGGATG
CTCCGCTGGACAAGATCAACGTCCATGTTCGAGGAGGTGTGATTCTGCCT
ACTCAGCAGCCTGCTAATACAACCGTGTACAGCCGGAAGAATCCGATGGG
TCTGCTGGTTGCCATGGACGACTCGTCTGCAGCATCCGGGACATTGTTCT
GGGACGACGGAGAGTCTATCGATTCCATAGAACGCCAAGACTACATCATC
ACCCGGGCTAACTTCGTGGGGACGGGACAGTACTCCGGGCACTGGCTGGG
CGATAACAAGTCCGCATGGGAGGACATGGAGTGGTCCATCACGGGAATGC
TAGAGTTCGGACTATTTGGAATACCCTACATCGGAGCCGACATCTGCGGT
TTTCTCCTGGACACGACGGAGCAGCTGTGCCAGCGGTGGATGCAGCTCGG
CGCATTCTATCCCTACTCACGCAACCACAACCACAACGACTTCATAGACC
AGGACCCGGCTGTCTTCAGTCAGAGCATGATTGACTCCTCCCGTGACGTC
ATGATGACGCGCTACACCCTGCTGCCCTACCTGTACACGCTGTTCTACCA
CGCCCACGTTGCCGGGACAACGGTTGTCAGGCCACTCCTACACGAGTTCC
CTACCGACTCCAACACGTGGGACGTGGACCGACAGTTTCTCTGGGGCAGC
GGGCTGCTCATCTCTCCTGTACTAACTCCGGACACCACTACCGTGGACGC
GTATTTCCCTGACACTCCCTGGTACGACTATTTCACGGGTCAAGAAGTCG
AAGGTCAATACAGAGGTCAGACGGTGACCCTGGATGCTCCGCTGGACAAG
ATCAACGTCCATGTTCGAGGAGGTGTGATTCTGCCTACTCAGCAGCCTGC
TAATACAACCGTGTACAGCCGGAAGAATCCGATGGGTCTGCTGGTTGCCA
TGGACGACTCGTCTGCAGCATCCGGGACATTGTTCTGGGACGACGGAGAG
TCTATCGATTCCATAGAACGCCAAGACTACATCATCACCCGGGCTAACTT
CGTGGGGACGGGACAGTACTCCGGGCACTGGCTGGGCGATAACAAGTCCG
CATGGGAGGACATGGAGTGGTCCATCACGGGAATGCTAGAGTTCGGACTA
TTTGGAATACCCTACATCGGAGCCGACATCTGCGGTTTTCTCCTGGACAC
GACGGAGCAGCTGTGCCAGCGGTGGATGCAGCTCGGCGCATTCTATCCCT
ACTCACGCAACCACAACCACAACGACTTCATAGACCAGGACCCGGCTGTC
TTCAGTCAGAGCATGATTGACTCCTCCCGTGACGTCATGATGACGCGCTA
CACCCTGCTGCCCTACCTGTACACGCTGTTCTACCACGCCCACGTTGCCG
GGACAACGGTTGTCAGGCCACTCCTACACGAGTTCCCTACCGACTCCAAC
ACGTGGGACGTGGACCGACAGTTTCTCTGGGGCAGCGGGCTGCTCATCTC
TCCTGTACTAACTCCGGACACCACTACCGTGGACGCGTATTTCCCTGACA
CTCCCTGGTACGACTATTTCACGGGTCAAGAAGTCGAAGGTCAATACAGA
GGTCAGACGGTGACCCTGGATGCTCCGCTGGACAAGATCAACGTCCATGT
TCGAGGAGGTGTGATTCTGCCTACTCAGCAGCCTGCTAATACAACCGTGT
ACAGCCGGAAGAATCCGATGGGTCTGCTGGTTGCCATGGACGACTCGTCT
GCAGCATCCGGGACATTGTTCTGGGACGACGGAGAGTCTATCGATTCCAT
AGAACGCCAAGACTACATCATCACCCGGGCTAACTTCGTGGGGACGGGAC
AGTACTCCGGGCACTGGCTGGGCGATAACAAGTCCGCATGGGAGGACATG
GAGTGGTCCATCACGGGAATGCTAGAGTTCGGACTATTTGGAATACCCTA
CATCGGAGCCGACATCTGCGGTTTTCTCCTGGACACGACGGAGCAGCTGT
GCCAGCGGTGGATGCAGCTCGGCGCATTCTATCCCTACTCACGCAACCAC
AACCACAACGACTTCATAGACCAGGACCCGGCTGTCTTCAGTCAGAGCAT
GATTGACTCCTCCCGTGACGTCATGATGACGCGCTACACCCTGCTGCCCT
ACCTGTACACGCTGTTCTACCACGCCCACGTTGCCGGGACAACGGTTGTC
AGGCCACTCCTACACGAGTTCCCTACCGACTCCAACACGTGGGACGTGGA
CCGACAGTTTCTCTGGGGCAGCGGGCTGCTCATCTCTCCTGTACTAACTC
CGGACACCACTACCGTGGACGCGTATTTCCCTGACACTCCCTGGTACGAC
TATTTCACGGGTCAAGAAGTCGAAGGTCAATACAGAGGTCAGACGGTGAC
CCTGGATGCTCCGCTGGACAAGATCAACGTCCATGTTCGAGGAGGTGTGA
TTCTGCCTACTCAGCAGCCTGCTAATACAACCGTGTACAGCCGGAAGAAT
CCGATGGGTCTGCTGGTTGCCATGGACGACTCGTCTGCAGCATCCGGGAC
ATTGTTCTGGGACGACGGAGAGTCTATCGATTCCATAGAACGCCAAGACT
ACATCATCACCCGGGCTAACTTCGTGGGGACGGGACAGTACTCCGGGCAC
TGGCTGGGCGATAACAAGTCCGCATGGGAGGACATGGAGTGGTCCATCAC
GGGAATGCTAGAGTTCGGACTATTTGGAATACCCTACATCGGAGCCGACA
TCTGCGGTTTTCTCCTGGACACGACGGAGCAGCTGTGCCAGCGGTGGATG
CAGCTCGGCGCATTCTATCCCTACTCACGCAACCACAACCACAACGACTT
CATAGACCAGGACCCGGCTGTCTTCAGTCAGAGCATGATTGACTCCTCCC
GTGACGTCATGATGACGCGCTACACCCTGCTGCCCTACCTGTACACGCTG
TTCTACCACGCCCACGTTGCCGGGACAACGGTTGTCAGGCCACTCCTACA
CGAGTTCCCTACCGACTCCAACACGTGGGACGTGGACCGACAGTTTCTCT
GGGGCAGCGGGCTGCTCATCTCTCCTGTACTAACTCCGGACACCACTACC
GTGGACGCGTATTTCCCTGACACTCCCTGGTACGACTATTTCACGGGTCA
AGAAGTCGAAGGTCAATACAGAGGTCAGACGGTGACCCTGGATGCTCCGC
TGGACAAGATCAACGTCCATGTTCGAGGAGGTGTGATTCTGCCTACTCAG
CAGCCTGCTAATACAACCGTGTACAGCCGGAAGAATCCGATGGGTCTGCT
GGTTGCCATGGACGACTCGTCTGCAGCATCCGGGACATTGTTCTGGGACG
ACGGAGAGTCTATCGATTCCATAGAACGCCAAGACTACATCATCACCCGG
GCTAACTTCGTGGGGACGGGACAGTACTCCGGGCACTGGCTGGGCGATAA
CAAGTCCGCATGGGAGGACATGGAGTGGTCCATCACGGGAATGCTAGAGT
TCGGACTATTTGGAATACCCTACATCGGAGCCGACATCTGCGGTTTTCTC
CTGGACACGACGGAGCAGCTGTGCCAGCGGTGGATGCAGCTCGGCGCATT
CTATCCCTACTCACGCAACCACAACCACAACGACTTCATAGACCAGGACC
CGGCTGTCTTCAGTCAGAGCATGATTGACTCCTCCCGTGACGTCATGATG
ACGCGCTACACCCTGCTGCCCTACCTGTACACGCTGTTCTACCACGCCCA
CGTTGCCGGGACAACGGTTGTCAGGCCACTCCTACACGAGTTCCCTACCG
ACTCCAACACGTGGGACGTGGACCGACAGTTTCTCTGGGGCAGCGGGCTG
CTCATCTCTCCTGTACTAACTCCGGACACCACTACCGTGGACGCGTATTT
CCCTGACACTCCCTGGTACGACTATTTCACGGGTCAAGAAGTCGAAGGTC
AATACAGAGGTCAGACGGTGACCCTGGATGCTCCGCTGGACAAGATCAAC
GTCCATGTTCGAGGAGGTGTGATTCTGCCTACTCAGCAGCCTGCTAATAC
AACCGTGTACAGCCGGAAGAATCCGATGGGTCTGCTGGTTGCCATGGACG
ACTCGTCTGCAGCATCCGGGACATTGTTCTGGGACGACGGAGAGTCTATC
GATTCCATAGAACGCCAAGACTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000011 | genome | Sc0000011:1591004..1594007 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97470_cuf5 |
| Biotype | protein_coding |
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