|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97466_cuf4 >transcript:BL97466_cuf4-protein ID=transcript:BL97466_cuf4-protein|Name=transcript:BL97466_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=140bp
DGFLYGAEAERIYAMYNAAYGPSVFTPAVFQTGGPLDADGDGHLTIIEVD
NAMDLTEVLVALDTDNDQHFTVDQALQFIDHHYFNVLDTNHDHQLSFQEL
QAGLTLDDLFNFYDRNGDGFLYGTEADRIYAMYNAAYGGN Run BLAST on NCBI mRNA from alignment at Sc0000011:1821015..1825826- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97466_cuf4 ID=transcript:BL97466_cuf4|Name=transcript:BL97466_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=4812bp|location=Sequence derived from alignment at Sc0000011:1821015..1825826- (Branchiostoma lanceolatum)
GTGACGGGTTCCTGTACGGTGCGGAGGCGGAGCGCATCTATGCCATGTAC
AACGCGGCGTACGGACCCTCGGTCTTCACACCGGCCGTGTTCCAGACCGG
CGGCCCCCTGGACGCTGACGGCGACGGACATCTGACCATCATTGAAGTGG
ACAACGCCATGGATCTGACTGAGGTCCTGGTGGCCTTGGACACCGACAGT
ACGTACCGAATGCCAAATGTTGACATTTTACACGAGTTTACACTTTTACG
CCTTGCCTANATCTAATATAGTATTAAATCGTTGAAGTAATCTTATTTTG
AAATTATTCTAATCACACCAAACTACACCATGGCAACGGAACGTTTGTAA
TTATATATACATTCGAAAGTTTGGACTGACGAATAAGGTTTAAACTGTGT
CCTATAATCCAGTGTTTTATCGTTTTCTAAAATATTTCGTTTCCCATGCT
GCATAAATGCAGTCTCGTCGCCACTTTGTCTCATAAATTGATTTGACAAT
GTGTTTGATGTTTTGTGAATAAAAAAAGTAATCCTCTAATGGATAGAGTG
TTTGATTTCTATTCCAAATGTCCATGGTTCAGTACTGCTATCCAATATTG
GTCTTGTCGGCAGATTGGCATTCCTGACGAAATATTTCGCGATCCGTCAC
ACGAGACCTTTTTTTCCGTCTCGACTGCAACATGAATTTTTTCTTAGCTT
CAGAATCTTACCAGAAGTTTAAGGTTTTCTGTATGTTTTGCGCGCAGACA
GGCCCCTCCACTGGACGCTGATGGTGACGGACATCTCACCATTATCGAGG
TGGACAACGCCATGGATCTGGACGTGGTCCTGGTGGCCTTGGACACCGAC
AGTAAGTACCGAACACTACACCTCATGTTGACATGTGACGTCACATCCGC
CCGCCTTGTGACGTCACATCCGTTCGCCATGTGACACAAGCAGTTTGGTG
CTGTGAAAGTGTAAACTTGTTGTCACACAATCACTACACATACTATATTA
GACTTTCGTTTGATCTCTTTCTAATATCTCAGGAAAGAGTGTATTCGATA
AATATAGATCATGATCGTGACACGGTGTATTCCGTATCACTCGAGGTACC
GGCCCAACCGTGGGTCGGATCGCCCGACGGCCGAATTTCTTGGGTCATAC
TTATCGGAAAAAGGCACACATTTCAATGCGAAATTTGAAATCTTCAAACA
ACTGTAGCCATTTCAACGCCCCATTCCGGTAGTCGAACTTCCGACAGCAC
CCAGTGCACGCGAAGTACGTTCGAATGATTCTATGGAAGCCGGTGTGACG
CCCGTGTGATAACCGAAAATATCACCCGGTCCGAAACACACGTATCGAAC
GTCATCACAAGTATGACACACATGTTATGATAGCGGCCTTTAATCGGCGT
CATTGTAACCTACGTGCAAATATCCATGTTTCTCTCTTCTTTTTCTAACT
GTAGACGATCAGCATTTCACCGTTGACCAGGCCCTCCAGTTTATCGACCA
CCACTACTTCAACGTCCTCGACACCAACCATGACCACCAGCTCAGCTTCC
AGGAACTCCAAGCAGGGCTGACCCTGGATGACCTGTTCAACTTCTATGAT
CGCAACGGTACGTTCTGATACCAACTTAGCCTATACAAGCCCTGCAATGG
ATGAATTCACAAAAACTGATTATGTCATTTGGAAAACGTTTGCAATTTCC
GTAAACATTCCAAGCTTTCGAAAGTATGTTCAGCATGTTCAAAGGCGTTT
AAATTTCGGATAAGATATCTTGTCCGAGTATGTATTCGGTTACGCCCTTT
ATAAAACGTTAGGCAATTTTGTTCAAGAGTACAAATTGCGTAAAAAATTC
GAGGACTGCCCAACTTACTTGCAGTTATAGATATTTCTGTGCAAGCATCG
CCGTGTTAAGCTAGTTCATGTTTCCCTCTTTCGTGTCTACAATCCTCAGG
TGACGGGTTCCTGTACGGTGCGGAGGCGGAGCGCATCTATGCCATGTACA
ACGCGGCGTACGGACCCTCGGTCTTCACACCGGCCGTGTTCCAGACCGGC
GGCCCCCTGGACGCTGACGGCGACGGACATCTGACCATCATTGAAGTGGA
CAACGCCATGGATCTGACTGAGGTCCTGGTGGCCTTGGACACCGACAGTA
CGTACCGAATGCCAAATGTTGACATTTTACACGAGTTTACACTTTTACGC
CTTGCCTACGTCACATCCGTCCGCCATGTGACGTCACATCCTACCATCCG
TCCACCATGTGACGTCACATCCTTTGGCCTTATGACGTCGAGTTTGGCGG
TCTTTGAAAGTGTAAACCCATTTGTCCTCCATGTGACGTCACATCTTTCG
GCCATCTGACGTCACGTCCGCCCGCCATGTGACGTCACATCCGTCCGCTA
GGCTAGGAGACGCATTGTCTCTCAAAATCGTTTGTTTTTGTTCTTTCCTT
TGCTTAAAAGTCTGAGAAAATCTCATCTCATATGATTCGTTAGAAAATAG
AATTTCTAGCTTTAGTCATCCTGCCTAGCTGTGTTATAGACTTATAGTCA
TAATGATCATGTAAGTGAAAACATCCAAGTTTACAAACTCTTCTTCTCCC
TGTAGTGGACCAGCATTTCACCGTTGACCAGGCCCTGCAGTTTATTGACC
ACCACTACTTCAACGTCCTCGACACCAACCATGACCATCAGCTGAGCTTC
CAAGAACTCCAGGCAGGGCTCACTCTGAACGACCTGTTCAACTTCTACGA
TCGCAACGGTATGCTAAAACATGAACTGTACCTACCTAATGCAGACAACA
AACGAGTTCAAGCTCACAAAAACATTGAAGACACACGTCATTTCCGTGAC
AATTTGAATGCGTTCGATTATTGAGGGAACTGACTCCCAACTGTGATGCA
GGCAGTTTTTTTAATTCGCCGATTGCGCCTACGTAATTAATCGGCGTTTG
GATTTCAGATAGCCTAAGCTTGTTGAGAAGTACGCATCTTATTTGCACCT
GCCCCCTCCCCCACCGTGAATTATGTCTTTGGACTAATAACCTCCTTGTG
TCTAACCTCCATGGTTGGAAATACCAACTTCCTTGGACGTACTTAACGCC
GAGATGTTTTTTGAATACCACCCTTGTTTCCATATTTTTTTCAATCCTCA
GGTGACGGATTCCTGTATGGTGCGGAGGCAGAGCGCATCTACGCCCTGTA
CAACGCGGCGTACGGACCCTCGCGCAAGCGCAGACAGACCCCTCCCCTGG
ACGCTGATGGAGACGGACATCTCACCATTATCGAGGTGGACAACGCCATG
GACCTGAATGTCGTCCTGGTGGCCTTGGACACCGACAGTACGTACCAAAT
GCTACATATTATGTTGGCATTTTAGACGAGTTGAATCTTTTGCAGACAAG
AGGCGCACGTCATATCCTTTGGCCATGTGACGTCACATCCGTCCGCCATG
TGACGTCACATCCGTTTCCATGCGACGTCGCATCGGTCCACCATACAACG
TCACATCCGTCCGCCACAAAATCGCTCTATTTTGTTCGATCTCTTGTTAG
CATGTCTGAAAAAGTCCCATCAGATGAAATGCATTACAAAATCGAATGAC
TAGCTTTAGCCATCCAGTATGCTTGCGTTTTAGCCATGTGAGTGTGAGCA
TCCACAATCTAAAACTCTTACTCTCCCCCCCCCGTAGATGACCAGCATTT
CACCGTTGACCAGGCCCTGCAGTTTATTGACCACCACTACTTCAACGTCC
TCGACACCAACCATGACCACCAGCTGAGCTTCCAGGAACTCCAAGCAGGG
CTGACCCTGGATGACCTGTTCAACTTTTATGATCGCAACGGTACGTTCGG
ACGTAAACTTTACCTATACAAGCCCTGCAATAGATGAAGCCAAATTTATA
AATACGAGATGTGATGTGGCGTTTCTAGAGAGAAATTGTGAAGTACGAAT
TTCAACAATCATTTTGAGAACTGCACATCTCCCCTAGCCTGATTTCATCT
CGAGATTTAGACGTCGCAGAGGTGTTTTTTCACCTTACACTTGTTTCAAT
ATTCCTTGTTCTCAATCCTCAGGTGACGGGTTCCTGTACGGTACGGAGGC
AGACCGCATCTACGCCATGTACAACGCGGCATACGGGGGGAACTGACCAG
TGTAAAGGCGACCGTTGTATCACCAGAAACAAATCAGCACTAAATGGCAA
CTTGCATACCTACACACCTACCTAGTTTCTCATCCAGACTTTGTCGTAGT
GAGGACAAGGTAAATATTGTGTCGGTCAGACTTGCATAAAACAGATTAAA
AGGAATTTTGCCGAAATTCATTCTTTGCTTTCGTCTCTTCATTTATTTAA
AAGAATTTTAAGAAAAAAACTAAGAAAAACTTGACCATACCAAACCCAAG
CTATCTTAGATTTAAACGATATCAGAAATGGGAGTTCTATTATAGTACCA
ACGGAGACCGACAGGGACCCCTAATCTAATACTTTCATCGATGGTTCAAG
ACTGAACCTCACACCAAATTTCATATCAAGCCATCCACAGCTTCTTCAGT
TATGCTATTCAACCACAGACACCGTTACGTTACCAAATGCAAATATCCTT
CTGGCAACAACTTGATGTGATAAGATTGATACGAGTGAAAACAAAGTAAG
CCAGGTCAAATTTGAATTGATGTAAGTAATCATAAAATAGCACAGCACGG
CACAGTATGTCTAGATCCTACCACCCCTCGCTGTCTTTGTACGGATGGAC
ATATGGTTTATGAAACAAGTGGTACATTACAGCTAAATGCTGAACTGCAC
ACTACTGTGCAC Coding sequence (CDS) from alignment at Sc0000011:1821015..1825826- >transcript:BL97466_cuf4 ID=transcript:BL97466_cuf4|Name=transcript:BL97466_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1692bp|location=Sequence derived from alignment at Sc0000011:1821015..1825826- (Branchiostoma lanceolatum)
GACGGGTTCCTGTACGGTGCGGAGGCGGAGCGCATCTATGCCATGTACAA
CGCGGCGTACGGACCCTCGGTCTTCACACCGGCCGTGTTCCAGACCGGCG
GCCCCCTGGACGCTGACGGCGACGGACATCTGACCATCATTGAAGTGGAC
AACGCCATGGATCTGACTGAGGTCCTGGTGGCCTTGGACACCGACAATGA
CCAGCATTTCACCGTTGACCAGGCCCTGCAGTTTATTGACCACCACTACT
TCAACGTCCTCGACACCAACCATGACCACCAGCTGAGCTTCCAGGAACTC
CAAGCAGGGCTGACCCTGGATGACCTGTTCAACTTTTATGATCGCAACGG
TGACGGGTTCCTGTACGGTACGGAGGCAGACCGCATCTACGCCATGTACA
ACGCGGCATACGGGGGGAACTGAGACGGGTTCCTGTACGGTGCGGAGGCG
GAGCGCATCTATGCCATGTACAACGCGGCGTACGGACCCTCGGTCTTCAC
ACCGGCCGTGTTCCAGACCGGCGGCCCCCTGGACGCTGACGGCGACGGAC
ATCTGACCATCATTGAAGTGGACAACGCCATGGATCTGACTGAGGTCCTG
GTGGCCTTGGACACCGACAATGACCAGCATTTCACCGTTGACCAGGCCCT
GCAGTTTATTGACCACCACTACTTCAACGTCCTCGACACCAACCATGACC
ACCAGCTGAGCTTCCAGGAACTCCAAGCAGGGCTGACCCTGGATGACCTG
TTCAACTTTTATGATCGCAACGGTGACGGGTTCCTGTACGGTACGGAGGC
AGACCGCATCTACGCCATGTACAACGCGGCATACGGGGGGAACTGAGACG
GGTTCCTGTACGGTGCGGAGGCGGAGCGCATCTATGCCATGTACAACGCG
GCGTACGGACCCTCGGTCTTCACACCGGCCGTGTTCCAGACCGGCGGCCC
CCTGGACGCTGACGGCGACGGACATCTGACCATCATTGAAGTGGACAACG
CCATGGATCTGACTGAGGTCCTGGTGGCCTTGGACACCGACAATGACCAG
CATTTCACCGTTGACCAGGCCCTGCAGTTTATTGACCACCACTACTTCAA
CGTCCTCGACACCAACCATGACCACCAGCTGAGCTTCCAGGAACTCCAAG
CAGGGCTGACCCTGGATGACCTGTTCAACTTTTATGATCGCAACGGTGAC
GGGTTCCTGTACGGTACGGAGGCAGACCGCATCTACGCCATGTACAACGC
GGCATACGGGGGGAACTGAGACGGGTTCCTGTACGGTGCGGAGGCGGAGC
GCATCTATGCCATGTACAACGCGGCGTACGGACCCTCGGTCTTCACACCG
GCCGTGTTCCAGACCGGCGGCCCCCTGGACGCTGACGGCGACGGACATCT
GACCATCATTGAAGTGGACAACGCCATGGATCTGACTGAGGTCCTGGTGG
CCTTGGACACCGACAATGACCAGCATTTCACCGTTGACCAGGCCCTGCAG
TTTATTGACCACCACTACTTCAACGTCCTCGACACCAACCATGACCACCA
GCTGAGCTTCCAGGAACTCCAAGCAGGGCTGACCCTGGATGACCTGTTCA
ACTTTTATGATCGCAACGGTGACGGGTTCCTGTACGGTACGGAGGCAGAC
CGCATCTACGCCATGTACAACGCGGCATACGGGGGGAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000011 | genome | Sc0000011:1821015..1825826 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97466_cuf4 |
| Biotype | protein_coding |
|
