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transcript:BL97466_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97466_cuf4
Unique Nametranscript:BL97466_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97466_cuf4

>transcript:BL97466_cuf4-protein ID=transcript:BL97466_cuf4-protein|Name=transcript:BL97466_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=140bp
DGFLYGAEAERIYAMYNAAYGPSVFTPAVFQTGGPLDADGDGHLTIIEVD
NAMDLTEVLVALDTDNDQHFTVDQALQFIDHHYFNVLDTNHDHQLSFQEL
QAGLTLDDLFNFYDRNGDGFLYGTEADRIYAMYNAAYGGN
Run BLAST on NCBI

mRNA from alignment at Sc0000011:1821015..1825826-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97466_cuf4 ID=transcript:BL97466_cuf4|Name=transcript:BL97466_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=4812bp|location=Sequence derived from alignment at Sc0000011:1821015..1825826- (Branchiostoma lanceolatum)
GTGACGGGTTCCTGTACGGTGCGGAGGCGGAGCGCATCTATGCCATGTAC AACGCGGCGTACGGACCCTCGGTCTTCACACCGGCCGTGTTCCAGACCGG CGGCCCCCTGGACGCTGACGGCGACGGACATCTGACCATCATTGAAGTGG ACAACGCCATGGATCTGACTGAGGTCCTGGTGGCCTTGGACACCGACAGT ACGTACCGAATGCCAAATGTTGACATTTTACACGAGTTTACACTTTTACG CCTTGCCTANATCTAATATAGTATTAAATCGTTGAAGTAATCTTATTTTG AAATTATTCTAATCACACCAAACTACACCATGGCAACGGAACGTTTGTAA TTATATATACATTCGAAAGTTTGGACTGACGAATAAGGTTTAAACTGTGT CCTATAATCCAGTGTTTTATCGTTTTCTAAAATATTTCGTTTCCCATGCT GCATAAATGCAGTCTCGTCGCCACTTTGTCTCATAAATTGATTTGACAAT GTGTTTGATGTTTTGTGAATAAAAAAAGTAATCCTCTAATGGATAGAGTG TTTGATTTCTATTCCAAATGTCCATGGTTCAGTACTGCTATCCAATATTG GTCTTGTCGGCAGATTGGCATTCCTGACGAAATATTTCGCGATCCGTCAC ACGAGACCTTTTTTTCCGTCTCGACTGCAACATGAATTTTTTCTTAGCTT CAGAATCTTACCAGAAGTTTAAGGTTTTCTGTATGTTTTGCGCGCAGACA GGCCCCTCCACTGGACGCTGATGGTGACGGACATCTCACCATTATCGAGG TGGACAACGCCATGGATCTGGACGTGGTCCTGGTGGCCTTGGACACCGAC AGTAAGTACCGAACACTACACCTCATGTTGACATGTGACGTCACATCCGC CCGCCTTGTGACGTCACATCCGTTCGCCATGTGACACAAGCAGTTTGGTG CTGTGAAAGTGTAAACTTGTTGTCACACAATCACTACACATACTATATTA GACTTTCGTTTGATCTCTTTCTAATATCTCAGGAAAGAGTGTATTCGATA AATATAGATCATGATCGTGACACGGTGTATTCCGTATCACTCGAGGTACC GGCCCAACCGTGGGTCGGATCGCCCGACGGCCGAATTTCTTGGGTCATAC TTATCGGAAAAAGGCACACATTTCAATGCGAAATTTGAAATCTTCAAACA ACTGTAGCCATTTCAACGCCCCATTCCGGTAGTCGAACTTCCGACAGCAC CCAGTGCACGCGAAGTACGTTCGAATGATTCTATGGAAGCCGGTGTGACG CCCGTGTGATAACCGAAAATATCACCCGGTCCGAAACACACGTATCGAAC GTCATCACAAGTATGACACACATGTTATGATAGCGGCCTTTAATCGGCGT CATTGTAACCTACGTGCAAATATCCATGTTTCTCTCTTCTTTTTCTAACT GTAGACGATCAGCATTTCACCGTTGACCAGGCCCTCCAGTTTATCGACCA CCACTACTTCAACGTCCTCGACACCAACCATGACCACCAGCTCAGCTTCC AGGAACTCCAAGCAGGGCTGACCCTGGATGACCTGTTCAACTTCTATGAT CGCAACGGTACGTTCTGATACCAACTTAGCCTATACAAGCCCTGCAATGG ATGAATTCACAAAAACTGATTATGTCATTTGGAAAACGTTTGCAATTTCC GTAAACATTCCAAGCTTTCGAAAGTATGTTCAGCATGTTCAAAGGCGTTT AAATTTCGGATAAGATATCTTGTCCGAGTATGTATTCGGTTACGCCCTTT ATAAAACGTTAGGCAATTTTGTTCAAGAGTACAAATTGCGTAAAAAATTC GAGGACTGCCCAACTTACTTGCAGTTATAGATATTTCTGTGCAAGCATCG CCGTGTTAAGCTAGTTCATGTTTCCCTCTTTCGTGTCTACAATCCTCAGG TGACGGGTTCCTGTACGGTGCGGAGGCGGAGCGCATCTATGCCATGTACA ACGCGGCGTACGGACCCTCGGTCTTCACACCGGCCGTGTTCCAGACCGGC GGCCCCCTGGACGCTGACGGCGACGGACATCTGACCATCATTGAAGTGGA CAACGCCATGGATCTGACTGAGGTCCTGGTGGCCTTGGACACCGACAGTA CGTACCGAATGCCAAATGTTGACATTTTACACGAGTTTACACTTTTACGC CTTGCCTACGTCACATCCGTCCGCCATGTGACGTCACATCCTACCATCCG TCCACCATGTGACGTCACATCCTTTGGCCTTATGACGTCGAGTTTGGCGG TCTTTGAAAGTGTAAACCCATTTGTCCTCCATGTGACGTCACATCTTTCG GCCATCTGACGTCACGTCCGCCCGCCATGTGACGTCACATCCGTCCGCTA GGCTAGGAGACGCATTGTCTCTCAAAATCGTTTGTTTTTGTTCTTTCCTT TGCTTAAAAGTCTGAGAAAATCTCATCTCATATGATTCGTTAGAAAATAG AATTTCTAGCTTTAGTCATCCTGCCTAGCTGTGTTATAGACTTATAGTCA TAATGATCATGTAAGTGAAAACATCCAAGTTTACAAACTCTTCTTCTCCC TGTAGTGGACCAGCATTTCACCGTTGACCAGGCCCTGCAGTTTATTGACC ACCACTACTTCAACGTCCTCGACACCAACCATGACCATCAGCTGAGCTTC CAAGAACTCCAGGCAGGGCTCACTCTGAACGACCTGTTCAACTTCTACGA TCGCAACGGTATGCTAAAACATGAACTGTACCTACCTAATGCAGACAACA AACGAGTTCAAGCTCACAAAAACATTGAAGACACACGTCATTTCCGTGAC AATTTGAATGCGTTCGATTATTGAGGGAACTGACTCCCAACTGTGATGCA GGCAGTTTTTTTAATTCGCCGATTGCGCCTACGTAATTAATCGGCGTTTG GATTTCAGATAGCCTAAGCTTGTTGAGAAGTACGCATCTTATTTGCACCT GCCCCCTCCCCCACCGTGAATTATGTCTTTGGACTAATAACCTCCTTGTG TCTAACCTCCATGGTTGGAAATACCAACTTCCTTGGACGTACTTAACGCC GAGATGTTTTTTGAATACCACCCTTGTTTCCATATTTTTTTCAATCCTCA GGTGACGGATTCCTGTATGGTGCGGAGGCAGAGCGCATCTACGCCCTGTA CAACGCGGCGTACGGACCCTCGCGCAAGCGCAGACAGACCCCTCCCCTGG ACGCTGATGGAGACGGACATCTCACCATTATCGAGGTGGACAACGCCATG GACCTGAATGTCGTCCTGGTGGCCTTGGACACCGACAGTACGTACCAAAT GCTACATATTATGTTGGCATTTTAGACGAGTTGAATCTTTTGCAGACAAG AGGCGCACGTCATATCCTTTGGCCATGTGACGTCACATCCGTCCGCCATG TGACGTCACATCCGTTTCCATGCGACGTCGCATCGGTCCACCATACAACG TCACATCCGTCCGCCACAAAATCGCTCTATTTTGTTCGATCTCTTGTTAG CATGTCTGAAAAAGTCCCATCAGATGAAATGCATTACAAAATCGAATGAC TAGCTTTAGCCATCCAGTATGCTTGCGTTTTAGCCATGTGAGTGTGAGCA TCCACAATCTAAAACTCTTACTCTCCCCCCCCCGTAGATGACCAGCATTT CACCGTTGACCAGGCCCTGCAGTTTATTGACCACCACTACTTCAACGTCC TCGACACCAACCATGACCACCAGCTGAGCTTCCAGGAACTCCAAGCAGGG CTGACCCTGGATGACCTGTTCAACTTTTATGATCGCAACGGTACGTTCGG ACGTAAACTTTACCTATACAAGCCCTGCAATAGATGAAGCCAAATTTATA AATACGAGATGTGATGTGGCGTTTCTAGAGAGAAATTGTGAAGTACGAAT TTCAACAATCATTTTGAGAACTGCACATCTCCCCTAGCCTGATTTCATCT CGAGATTTAGACGTCGCAGAGGTGTTTTTTCACCTTACACTTGTTTCAAT ATTCCTTGTTCTCAATCCTCAGGTGACGGGTTCCTGTACGGTACGGAGGC AGACCGCATCTACGCCATGTACAACGCGGCATACGGGGGGAACTGACCAG TGTAAAGGCGACCGTTGTATCACCAGAAACAAATCAGCACTAAATGGCAA CTTGCATACCTACACACCTACCTAGTTTCTCATCCAGACTTTGTCGTAGT GAGGACAAGGTAAATATTGTGTCGGTCAGACTTGCATAAAACAGATTAAA AGGAATTTTGCCGAAATTCATTCTTTGCTTTCGTCTCTTCATTTATTTAA AAGAATTTTAAGAAAAAAACTAAGAAAAACTTGACCATACCAAACCCAAG CTATCTTAGATTTAAACGATATCAGAAATGGGAGTTCTATTATAGTACCA ACGGAGACCGACAGGGACCCCTAATCTAATACTTTCATCGATGGTTCAAG ACTGAACCTCACACCAAATTTCATATCAAGCCATCCACAGCTTCTTCAGT TATGCTATTCAACCACAGACACCGTTACGTTACCAAATGCAAATATCCTT CTGGCAACAACTTGATGTGATAAGATTGATACGAGTGAAAACAAAGTAAG CCAGGTCAAATTTGAATTGATGTAAGTAATCATAAAATAGCACAGCACGG CACAGTATGTCTAGATCCTACCACCCCTCGCTGTCTTTGTACGGATGGAC ATATGGTTTATGAAACAAGTGGTACATTACAGCTAAATGCTGAACTGCAC ACTACTGTGCAC

Coding sequence (CDS) from alignment at Sc0000011:1821015..1825826-

>transcript:BL97466_cuf4 ID=transcript:BL97466_cuf4|Name=transcript:BL97466_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1692bp|location=Sequence derived from alignment at Sc0000011:1821015..1825826- (Branchiostoma lanceolatum)
GACGGGTTCCTGTACGGTGCGGAGGCGGAGCGCATCTATGCCATGTACAA
CGCGGCGTACGGACCCTCGGTCTTCACACCGGCCGTGTTCCAGACCGGCG
GCCCCCTGGACGCTGACGGCGACGGACATCTGACCATCATTGAAGTGGAC
AACGCCATGGATCTGACTGAGGTCCTGGTGGCCTTGGACACCGACAATGA
CCAGCATTTCACCGTTGACCAGGCCCTGCAGTTTATTGACCACCACTACT
TCAACGTCCTCGACACCAACCATGACCACCAGCTGAGCTTCCAGGAACTC
CAAGCAGGGCTGACCCTGGATGACCTGTTCAACTTTTATGATCGCAACGG
TGACGGGTTCCTGTACGGTACGGAGGCAGACCGCATCTACGCCATGTACA
ACGCGGCATACGGGGGGAACTGAGACGGGTTCCTGTACGGTGCGGAGGCG
GAGCGCATCTATGCCATGTACAACGCGGCGTACGGACCCTCGGTCTTCAC
ACCGGCCGTGTTCCAGACCGGCGGCCCCCTGGACGCTGACGGCGACGGAC
ATCTGACCATCATTGAAGTGGACAACGCCATGGATCTGACTGAGGTCCTG
GTGGCCTTGGACACCGACAATGACCAGCATTTCACCGTTGACCAGGCCCT
GCAGTTTATTGACCACCACTACTTCAACGTCCTCGACACCAACCATGACC
ACCAGCTGAGCTTCCAGGAACTCCAAGCAGGGCTGACCCTGGATGACCTG
TTCAACTTTTATGATCGCAACGGTGACGGGTTCCTGTACGGTACGGAGGC
AGACCGCATCTACGCCATGTACAACGCGGCATACGGGGGGAACTGAGACG
GGTTCCTGTACGGTGCGGAGGCGGAGCGCATCTATGCCATGTACAACGCG
GCGTACGGACCCTCGGTCTTCACACCGGCCGTGTTCCAGACCGGCGGCCC
CCTGGACGCTGACGGCGACGGACATCTGACCATCATTGAAGTGGACAACG
CCATGGATCTGACTGAGGTCCTGGTGGCCTTGGACACCGACAATGACCAG
CATTTCACCGTTGACCAGGCCCTGCAGTTTATTGACCACCACTACTTCAA
CGTCCTCGACACCAACCATGACCACCAGCTGAGCTTCCAGGAACTCCAAG
CAGGGCTGACCCTGGATGACCTGTTCAACTTTTATGATCGCAACGGTGAC
GGGTTCCTGTACGGTACGGAGGCAGACCGCATCTACGCCATGTACAACGC
GGCATACGGGGGGAACTGAGACGGGTTCCTGTACGGTGCGGAGGCGGAGC
GCATCTATGCCATGTACAACGCGGCGTACGGACCCTCGGTCTTCACACCG
GCCGTGTTCCAGACCGGCGGCCCCCTGGACGCTGACGGCGACGGACATCT
GACCATCATTGAAGTGGACAACGCCATGGATCTGACTGAGGTCCTGGTGG
CCTTGGACACCGACAATGACCAGCATTTCACCGTTGACCAGGCCCTGCAG
TTTATTGACCACCACTACTTCAACGTCCTCGACACCAACCATGACCACCA
GCTGAGCTTCCAGGAACTCCAAGCAGGGCTGACCCTGGATGACCTGTTCA
ACTTTTATGATCGCAACGGTGACGGGTTCCTGTACGGTACGGAGGCAGAC
CGCATCTACGCCATGTACAACGCGGCATACGGGGGGAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97466gene:BL97466Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97466_cuf4transcript:BL97466_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97466_cuf4-E1BL97466_cuf4-E1-1564476830-102689Branchiostoma lanceolatumexon
BL97466_cuf4-E2BL97466_cuf4-E2-1564476830-102686Branchiostoma lanceolatumexon
BL97466_cuf4-E3BL97466_cuf4-E3-1564476830-102684Branchiostoma lanceolatumexon
BL97466_cuf4-E4BL97466_cuf4-E4-1564476830-102682Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:1821015..1825826 -
Properties
Property NameValue
Transcript idBL97466_cuf4
Biotypeprotein_coding