transcript:BL97464_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97464_cuf0
Unique Nametranscript:BL97464_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97464_cuf0

>transcript:BL97464_cuf0-protein ID=transcript:BL97464_cuf0-protein|Name=transcript:BL97464_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=163bp
MMSSKMADKKARESGRLRDADKRRVIDNITRLKRQRRQIENLERDNFHDD
PHANLVLVNKKLPQFSDTNDSPATKKKKKTRGDHFKQRFRKNFQTLLEEE
QLSIRGGPNYLTAQVPPSEYPERKFCAVCGFPSNYTCVTCGARYCCVRCL
GTHQDTRCLKWTV
Run BLAST on NCBI

mRNA from alignment at Sc0000011:4998003..5002568+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97464_cuf0 ID=transcript:BL97464_cuf0|Name=transcript:BL97464_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4566bp|location=Sequence derived from alignment at Sc0000011:4998003..5002568+ (Branchiostoma lanceolatum)
AATGAGTCAATTTATGGCTGCAAAAGGAATCAAAAGATGGCTTTTGAAAT
ATAATGACCTTTGACCCATGATGTCATCGAAAATGGCTGACAAGAAAGCG
AGGGAAAGCGGTTTGTACACAATTGTGAAGTTTTGAGGCCAGTTTGCTCA
GCTTTCGGTGTAATAACAGTGGTATGTTGTTGGTGAACAAATAAAGAATG
CGGCAGATCTAATATTATGTGATTCGTGCGCTTTTAGTTCAAGATACAGA
CTTTAGTTTGTGCCCCCCTCCCCACACACCAAGATATGGTGCAAATTTAT
TGTTTTGAAACGAAATTTAGAATCAAATTGCTAGTATGTTGCGTATGTCA
TTTCTACAGGGCGACTTCGAGATGCAGATAAGAGAAGAGTGATTGACAAC
ATCACGCGACTAAAACGGCAGCGGCGACAAATAGAGAACCTGGAAAGAGA
CAACTTCCACGACGACCCACATGCCAACCTCGTCTTAGTAAACAAAAAGC
TGCCACAGTTTAGTGACACCAATGACTCACGTGAGTTCTTCTTATTCTAG
GGATTTATACTATACCTTTCTATGTGTTTTAAACTTTGATTATTGTAATT
ATTTTAACGCATGTAATGTAAAACATCTCTTTGAACACAGCTGCTACCAA
GAAGAAGAAGAAAACGAGAGGAGATCATTTTAAGCAGAGGTTCAGAAAAA
ACTTCCAGACATTGTTGGAGGAAGAGGTGAGATCAATTTTAATTTCCTTA
CTGTTCATATTGTGTTTCACTAGTATGTAACATGTATTTATTTGCTTCAA
AAGCATCAACACATATTAAAATGTTAACAAACACCCCTAGACAAAATAAG
CTCCTAATTTGTTACTATCAGTAGCTTGTATACCTAATGGTCTACTCTGT
AATAAGCATAATTTCTTTGCTTATACAGCCTTTCATTCAGGATATTCAGG
ATCATTGTTCCTTTTCCCTCATTGTCCCAGCAACTCAGCATAAGAGGAGG
ACCTAACTACCTTACGGCACAGGTGCCACCATCCGAGTACCCAGAGAGAA
AGTTCTGTGCAGTGTGTGGATATCCTTTCAAAGCTTGTACATATATTGAA
TATAAAACATTTATTAGTATCATGGGCAGTGTTCTCGCCAGGCCTTTTCA
GCATAGGGGCCCCCTATGCTGTGATTTGGACCCCCTATGCTGTGATCTGG
ACCCCTATGCTGTGTTTCAACCAGCATAGGGGTGTTTCTTTCTGGGACAA
ACCTTGTGACCCTTCATAAATCTTATAAAAAGTTCATATTTGGCTTTAGA
ATGAGGCTGTGACAGAGGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGTGACCCTTCATAAATCTTATAAAAAGTTCATATTTGGCTTTAGAATGA
GGCTGTGACAGAGGAAAAAACTCTACTTCACAAAATTTATCCCTCAAAAT
GCTTGTAATAATGTCTCATTGGGTCATGAATTTACAAATTTTCCGGGGGA
ACATGCCAGACTCCCTACTCTGGTCATGTCTTCAGCACTCCACGCATGAC
TTGCACCGCTAAAGTTGGCCTTCTGTACCTGACCCCTATGCTGTGAAAAA
ATTCTGGTGAGAACACTGATGGGGTGTACTGCTTCTTGCTGAGGGGTCAT
GCAATGTTAGGCCAGGAGACAGGGATTGATAGGTCACAAGTTCGATTCCT
GACTAGATGTTGTGTCCTTTGGAAAGACACTTTCGGTTAGGGTCTTAGGG
AGGTAAAAAAAGATGTGGTGCAAGAAGAGGGATGGGCTCTGCCTTCCAAT
ACTGTGCACAAAACATATTGGATTATAAGCCCACTGCCTCTACAGTCTCA
AAAAGGCTATGGGACCTTTACCTTTTAACGTTACTTAGTTTTGATTATGC
TGCAAAATATTAAGATTTATTATGCTTATTGGAGAAAGGTTGATACCAGT
GTTTTTTGTGTGAATAGGTTTTCCTAGCATGCGTTTTTTTAAGGGAAAAT
TTCAGTTTGGTGATCTGTAAAGAACACAAACAAAAAAAACTTGGCTTTTA
TTCATATGGCAACAACATTTCATGATAACAAAGAAACCTTAACATGATCC
TACGTTCCCCTCCAACTACACCTGTGTTACCTGTGGTGCCAGGTACTGCT
GTGTCAGGTGTTTAGGAACACATCAGGATACAAGGTGAGCAACAAGTTGA
AGATTTACTGTAAATCATTAGATTTTAGCATGGTTTTACATTTGCCGTTT
TTGTAGTGACAGTTCAAACTACCATAGTAGTGAAATGCAAGACAGAGAAT
ATGTTCACAGTTTGATTAATTCATGGCGAGAGGTCATCACACAAAAGCGT
GAACATGAAAACACCACAAATATTTTACTATTTGCAAGTCTACCCGGTAG
TAAAAGTTCTTGACTCACTGGACCAATAACAATGCTCCTTGCTCAAATGC
ATTGATTTGTTTTTCCATGTAGAATGATTTATTATGTCACAATACATTAC
TAGACTGCCTTAAAGCAACATATTTGCCATAGTTTATTTTGTATCTAGCA
TCTAACATGGATTTCTACTTCTTTCTCAGGTGCCTGAAGTGGACAGTGTA
GTATCAAGTCAACATGTAAATAAGTGTTCAGGTCTGCTGCAAGTGTGAGA
TGAGTGGTCAAGTCAAGTCAAGTCTGTTTTGCATTCCAGAAAACATCAGA
CGTTAGAAAACTGTTGGAAGACATAGATTGATGTAAATGGGCAAGCTCCT
TCCTATAGAGAGGTAGACTGGCAAATGTTTTTTTCAGAAAACAGATACAC
ATACAGATAAATCTATTCTGCAGTAAGCTTCAGCATATAGGGCATTTTCA
TGCAATGACATAGGGACATGGAGGCAGATGCAGCTATATGCATTTCAATG
AATCCTGGATCAAGAATTTCTGGTCAACTAGAGATCTTCTGACTTTCTAA
GATAACCTATTAAGTGTGTACAGTTCCTAGAAAAAAACAGTCGAAAACAG
GCGAATGCATTAAAAATTTCAATTGAAATGTTGCCATGTCCTTTTTTGCT
TCAGAACTTGTTCTGTGGGGTAACACACATAATGGATTCCTGGTGAGGGA
TTTTGGAAATATTGTGAAATAACAAGATGATACAGTAAAATTGGCTAACA
GATTGTGATTTTATACATAGGCACTACTCACATGAAAGGGATTGTATGTC
AAAGTTACTGGCTAGGGCATAGCATTTGTAACTAGAAAGAAATCACGAGA
GCACTAGCTGACAGCAAGTATTAAGACAACATTCATGCTTAGTTAACTAG
ATAACAGTAGTGGACAAACCATGCGGGTCATAAGAATACGACTGACATCA
TCCTTTGTACATGGTCCGAACGCTTTTCATTGATATCGTTGATACAGATC
TTTACTCCTTTTGATTTTTGTGCATTTTCAAGCTTAAATTTTAGATGGGA
ATCAGCATAGTGATTAAAGGGGTTCCCAACTCCAGAAGCAAGTCCTAAAC
GACCATTGTTTTGACAAGCATATCAACCAAATTTTGTAATTTATCTCAAA
AAACAGAGAAATGGGC

Coding sequence (CDS) from alignment at Sc0000011:4998003..5002568+

>transcript:BL97464_cuf0 ID=transcript:BL97464_cuf0|Name=transcript:BL97464_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2952bp|location=Sequence derived from alignment at Sc0000011:4998003..5002568+ (Branchiostoma lanceolatum)
ATGATGTCATCGAAAATGGCTGACAAGAAAGCGAGGGAAAGCGGGCGACT
TCGAGATGCAGATAAGAGAAGAGTGATTGACAACATCACGCGACTAAAAC
GGCAGCGGCGACAAATAGAGAACCTGGAAAGAGACAACTTCCACGACGAC
CCACATGCCAACCTCGTCTTAGTAAACAAAAAGCTGCCACAGTTTAGTGA
CACCAATGACTCACCTGCTACCAAGAAGAAGAAGAAAACGAGAGGAGATC
ATTTTAAGCAGAGGTTCAGAAAAAACTTCCAGACATTGTTGGAGGAAGAG
CAACTCAGCATAAGAGGAGGACCTAACTACCTTACGGCACAGGTGCCACC
ATCCGAGTACCCAGAGAGAAAGTTCTGTGCAGTGTGTGGGTTCCCCTCCA
ACTACACCTGTGTTACCTGTGGTGCCAGGTACTGCTGTGTCAGGTGTTTA
GGAACACATCAGGATACAAGGTGCCTGAAGTGGACAGTGTAGATGATGTC
ATCGAAAATGGCTGACAAGAAAGCGAGGGAAAGCGGGCGACTTCGAGATG
CAGATAAGAGAAGAGTGATTGACAACATCACGCGACTAAAACGGCAGCGG
CGACAAATAGAGAACCTGGAAAGAGACAACTTCCACGACGACCCACATGC
CAACCTCGTCTTAGTAAACAAAAAGCTGCCACAGTTTAGTGACACCAATG
ACTCACCTGCTACCAAGAAGAAGAAGAAAACGAGAGGAGATCATTTTAAG
CAGAGGTTCAGAAAAAACTTCCAGACATTGTTGGAGGAAGAGCAACTCAG
CATAAGAGGAGGACCTAACTACCTTACGGCACAGGTGCCACCATCCGAGT
ACCCAGAGAGAAAGTTCTGTGCAGTGTGTGGGTTCCCCTCCAACTACACC
TGTGTTACCTGTGGTGCCAGGTACTGCTGTGTCAGGTGTTTAGGAACACA
TCAGGATACAAGGTGCCTGAAGTGGACAGTGTAGATGATGTCATCGAAAA
TGGCTGACAAGAAAGCGAGGGAAAGCGGGCGACTTCGAGATGCAGATAAG
AGAAGAGTGATTGACAACATCACGCGACTAAAACGGCAGCGGCGACAAAT
AGAGAACCTGGAAAGAGACAACTTCCACGACGACCCACATGCCAACCTCG
TCTTAGTAAACAAAAAGCTGCCACAGTTTAGTGACACCAATGACTCACCT
GCTACCAAGAAGAAGAAGAAAACGAGAGGAGATCATTTTAAGCAGAGGTT
CAGAAAAAACTTCCAGACATTGTTGGAGGAAGAGCAACTCAGCATAAGAG
GAGGACCTAACTACCTTACGGCACAGGTGCCACCATCCGAGTACCCAGAG
AGAAAGTTCTGTGCAGTGTGTGGGTTCCCCTCCAACTACACCTGTGTTAC
CTGTGGTGCCAGGTACTGCTGTGTCAGGTGTTTAGGAACACATCAGGATA
CAAGGTGCCTGAAGTGGACAGTGTAGATGATGTCATCGAAAATGGCTGAC
AAGAAAGCGAGGGAAAGCGGGCGACTTCGAGATGCAGATAAGAGAAGAGT
GATTGACAACATCACGCGACTAAAACGGCAGCGGCGACAAATAGAGAACC
TGGAAAGAGACAACTTCCACGACGACCCACATGCCAACCTCGTCTTAGTA
AACAAAAAGCTGCCACAGTTTAGTGACACCAATGACTCACCTGCTACCAA
GAAGAAGAAGAAAACGAGAGGAGATCATTTTAAGCAGAGGTTCAGAAAAA
ACTTCCAGACATTGTTGGAGGAAGAGCAACTCAGCATAAGAGGAGGACCT
AACTACCTTACGGCACAGGTGCCACCATCCGAGTACCCAGAGAGAAAGTT
CTGTGCAGTGTGTGGGTTCCCCTCCAACTACACCTGTGTTACCTGTGGTG
CCAGGTACTGCTGTGTCAGGTGTTTAGGAACACATCAGGATACAAGGTGC
CTGAAGTGGACAGTGTAGATGATGTCATCGAAAATGGCTGACAAGAAAGC
GAGGGAAAGCGGGCGACTTCGAGATGCAGATAAGAGAAGAGTGATTGACA
ACATCACGCGACTAAAACGGCAGCGGCGACAAATAGAGAACCTGGAAAGA
GACAACTTCCACGACGACCCACATGCCAACCTCGTCTTAGTAAACAAAAA
GCTGCCACAGTTTAGTGACACCAATGACTCACCTGCTACCAAGAAGAAGA
AGAAAACGAGAGGAGATCATTTTAAGCAGAGGTTCAGAAAAAACTTCCAG
ACATTGTTGGAGGAAGAGCAACTCAGCATAAGAGGAGGACCTAACTACCT
TACGGCACAGGTGCCACCATCCGAGTACCCAGAGAGAAAGTTCTGTGCAG
TGTGTGGGTTCCCCTCCAACTACACCTGTGTTACCTGTGGTGCCAGGTAC
TGCTGTGTCAGGTGTTTAGGAACACATCAGGATACAAGGTGCCTGAAGTG
GACAGTGTAGATGATGTCATCGAAAATGGCTGACAAGAAAGCGAGGGAAA
GCGGGCGACTTCGAGATGCAGATAAGAGAAGAGTGATTGACAACATCACG
CGACTAAAACGGCAGCGGCGACAAATAGAGAACCTGGAAAGAGACAACTT
CCACGACGACCCACATGCCAACCTCGTCTTAGTAAACAAAAAGCTGCCAC
AGTTTAGTGACACCAATGACTCACCTGCTACCAAGAAGAAGAAGAAAACG
AGAGGAGATCATTTTAAGCAGAGGTTCAGAAAAAACTTCCAGACATTGTT
GGAGGAAGAGCAACTCAGCATAAGAGGAGGACCTAACTACCTTACGGCAC
AGGTGCCACCATCCGAGTACCCAGAGAGAAAGTTCTGTGCAGTGTGTGGG
TTCCCCTCCAACTACACCTGTGTTACCTGTGGTGCCAGGTACTGCTGTGT
CAGGTGTTTAGGAACACATCAGGATACAAGGTGCCTGAAGTGGACAGTGT
AG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97464gene:BL97464Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97464_cuf0transcript:BL97464_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97464_cuf0-E1BL97464_cuf0-E1-1564476830-105819Branchiostoma lanceolatumexon
BL97464_cuf0-E2BL97464_cuf0-E2-1564476830-105821Branchiostoma lanceolatumexon
BL97464_cuf0-E3BL97464_cuf0-E3-1564476830-105823Branchiostoma lanceolatumexon
BL97464_cuf0-E4BL97464_cuf0-E4-1564476830-105825Branchiostoma lanceolatumexon
BL97464_cuf0-E5BL97464_cuf0-E5-1564476830-105827Branchiostoma lanceolatumexon
BL97464_cuf0-E6BL97464_cuf0-E6-1564476830-105830Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:4998003..5002568 +
Properties
Property NameValue
Transcript idBL97464_cuf0
Biotypeprotein_coding