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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97463_cuf3 >transcript:BL97463_cuf3-protein ID=transcript:BL97463_cuf3-protein|Name=transcript:BL97463_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=121bp
ELGPSGCDHEIARGFCSECVSSGVRSDVDCSQPAQLRRERRKREMRVVVR
PGQANRLKLDGQVAVIDRQLTALEDENKKLGQRLNGIPNDPKNIGIKKAI
ANYQAMVLKLAQLTEALLKKP Run BLAST on NCBI mRNA from alignment at Sc0000311:48651..53993+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97463_cuf3 ID=transcript:BL97463_cuf3|Name=transcript:BL97463_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5343bp|location=Sequence derived from alignment at Sc0000311:48651..53993+ (Branchiostoma lanceolatum)
CTGAGCTAGGACCCTCCGGTTGTGATCATGAAATCGCTCGTGGTTTTTGT
AGCGAGTGTGTTAGCAGTGGCGTTCGCTCAGACGTCGACTGCAGCCAACC
CGCCCAACTTCGCCGTGAAAGAAGAAAACGGGAAATGCGTGTGGTCGTTC
GCCCTGGACAAGCCAACCGGTAAGTCGTTCTGTCTTTTCGTGCCAGCACT
AATACTGTGTAAGAAGGTGTTTGTCTGCAAACAGTATCTAACTACAGCGT
TCGATCTAAAAACCTCGGTACTTACGCAGTAGTTAAGGAATATGCTTGTT
CAGTGTAAGGGCGGTCGGTGGTCAGTCCAATGGACATGATATTTATTTCC
ACCCCGTTTCCAGTGTGTATGTAACAGCCCTGAGACAATGTGATTAGATG
TTTGTATGTTTATTTGTTGATAAGTCCAAACGTCCAACCCAGTGGTATCG
CCATGACACATAATCAAAGATTGCGAACGTGTCATAAAGTTTAAAGAACA
TTTGCAAAAGCTTCACAGCGCCAACATTTGTCCTGATATTTGACGGCGTA
GATGAACTATGGTTTTTAATTAACAGTTATGTGAATGGAGGATCTAGGAA
GTTTGAATTTTTTTACGTTTTTTAAATGTCCTTCCTGTGAAATCTGCATT
GGAATGTGTTCCGTTATATCTTATATTTCATTCAAATCAAAGCCCGGGTC
AAATACATCGTACGATCGGGTTTTTGTCGGTGGCGTTAGCGCCGCACGTC
GTACGTTTGAGAAGCAGTTGTGCGCATTATGCAATAATTTACAAAAGCCC
CTGTCACAGTTGTGCGTATATACAAACCAGAATGAGTTGCGTATTAAAAT
GTTTTTGGTTTAGGTTAAGTTTGCAGCCGAAAAAGTAATTTCTTTGGTTT
GATAACTAGACTGCTCAACGATGGGTCAAAGTAGAAAACAACTTCCTCCT
CGCAAAATTTACTTAAACCAAAAAAATGTTACTGCGGAACTCATGCGCAC
TTGAATACACGCACAGGTGTGACAGGGCCCTAAGGAGAGCGTATTTGGGT
AAATCGCAGGTAAAATCAGCCACCTCCGAGCGTCGTGCGACGGAAACAGC
AAACCAAAAGGATCTGAGCATGTTCAAAATTATCTCGAGAACGGCTTTTA
TAGCCTTCATAGTAGGCTGCACTGCGTTTGTGTTCTACTGAAGAGGTAAT
AGACTAATTTCAGGCTGCTGACAGCCTGATTTTGTTCGCGATTGATACGC
AATTTCTGTCATACTTGTGCGTATATTCAAGTGCGCGTGAGTTGCGCATT
AAGATTTTTGGTTTAGATAAGGTTTGCGGGAAAAAGTTGTTTCTACTTTG
ACCCACCGTTGTGCAGCCTAGTGATCGAACCTAAGAAATCACTTATTCGG
CTGCAAACTTAACCTCCACATGTTAATACGCAACTCATGCGGACTTGTAT
ATACGCACAAGTGTGACGGGGGCTTATAGCACGATGTATATGATCGGGAC
TGCGGCACGTTGGCGGTCTCGCCGCGACCTATATTGTATTTATATCACCC
TTGACTTTATAATGAGAATATTATGAAAATGTACGAGTACAACTAAAAAA
CAAAAATCAAACAAAGCGTACAAAATATTTTAGAATCGATGTGATTCGTT
GAGCGCTCAGTCAAGTCGCTAGGCCGCAGCGAGGTCGCCAACATCTATGT
GAATGTCCAGCCAGATACCCACTTTAAGGACGTTAATATTGAAATTACAA
AATGTACTTGGTTGTTTGTCACAGCGTTCTTGTGAAAATTATGACTGTAA
CACTTCATGCTAAAGAACGCTGTTTTGTGTGTGTTGGAACGAAGGCGGCT
GTCCAAAGACCGAGAAGCCGGGTCAAGTCGTGAAGGACCTGGCGGCGGAT
ATCGCCGGGCAGAAGGCCAGACAGGCAAAGATGGAAACTCAACTACCGCT
TGACAAAGCCAGCATCCAAAGTAGAATCACCATGACAGAAGTGGAACGGT
AGGTATGACATGGGAGCCGGGAAGTCCATGGGAACGCTGGGTTGTTTTAT
CAAAGCACTAGAAGTCTCTTAAAGGCAACCAAAGCAATATTAGGGCAATA
AAATTGACATGAAAAAAAAAACACTGTTAAGCACATTTGCTCAATAACTT
CATACTTTGAGCATTTCTAAACCGTGCAAAAATGTGCCGTACGATGATTC
CCTTAGTTTCGTGAGCCTACAAAAACTCCGGCGACGATTTTCAGTGAGTT
CTCACATCACAACGTCGTCATATTTTTGCACCATAGACGTCGCTATACAT
TGTGATAGTGTTGTTTGAACTAATCATGTATAGAAAGTACTAAATAAATT
GACTTTCAAAATCCGATTTTCGGGCCCTATGTATTCCTTGACCTTGGGTT
GCCTTTGATGCCGAAGTAATTACGACAATACACATCGTAGAAACTAAGAA
AAAGCAGAAATGTAGTATTTGCAAGCAAATACATAATATTTACCTTCACG
CAATCTAACCTAACAAACTACTGCTCTGTTTATTCTTACTCAAACACATT
CATATTTGATAACCAGTTCCTGTCCTGCCACTTGCTACACTACCAGTAAC
CATGGTGACAGTTGTCTGGTCCAGGTCATTGACCTTATATGTATTATTTC
AGTATTGAGTTATGCTATGATTTAATATCTAATTCTTATATGCAATCAAT
TATTATTTTGTCATCATTTTGTTACTATTATTATCGTATGATTTGATGTG
ATATTGCTATCACTTATTACTATAATTATGTTATAAATTCTTCGATTAAT
ATTATTTTTTTGCTTATGTTTCGTTAACTGTGATGGACTTTCTAATCTCT
ATTATTTCAGTATCGAGTTATGGTATGATTTGATATATAATTTTTATATG
CGACCAATTACTATTTTGTCAGCATTCTGTTACTATTATTATTGTCTGAT
TTGTTATTGTTATCACTTACTACTATAATTATGTTATGAATTGTTAGATT
TATGTTATTTTTTGTTAATTTAGATGGGGGAAGACCTTGTATAATCCATC
ATGTTTTTGTTCTTTCCCCAGCACGTGAATTTTTTGTTATATTCTGTTCT
ATTCTATTATGTAATACAAACTGATTTTATATGTGCAAATGAATAAATCA
AATCAAATCAGTACACGAGATACGCGTTTGCATGTGAGCCACACAAAAAA
ACGTTGCTACAACACTTGATACGTATGTTTGTTTATTTATTAATAGTTGC
GCCAGTGTGTTTGACGTAATTTAAAGCCGACAGTATTAGTCCAGAGGGAA
AACTATTTTTGTATGATCTGTGTCTATCAGAATATTTTCAAAACTCGCAA
TGACGTATGAAGTAAAGCAGTCATCCTCAATTGAGGTGAAGCATAATGAC
GTGTGTCTGGTACAGGTCATTGACCTTATATGTTTGGAGAAGAAGAAGAA
ACTGATCAAAACGAATCTCCATTTCGTGAGGGTAAACATAAGAAACCAGC
AAAAGATTTTTTTCGTTTCTCATTTAGACAATGACCTTTCTGCAAACAAA
ATTATCTAGAATCCGCTGTCAGAGTCTTCTTGCAAAGATTAGGGACACAG
ACTCCCCCCCCCCCCCCCTTACCCAGTCTGCTTTGCTGCCCCTGCAGTCC
CACAAACAAATACAGCAACACTGGAGATGTATGGCACAAAGCTGCGTTCT
GTTTGTTGTGAAACACAGAAACACAAGAAGGAAGACAAACAAACATGCAG
ACAGACAGATAGACAGACGGACCACATAACATTCCGCTCGTGAAGTACAA
GTCAAATAGATGCAGTTGCCAGTTGGCCATTTTGTTCCAATGCCGAGTTC
TACCCCCATATAACAATGATTTAGAAATTGGCTTGCTCAGTGAGTCGGGA
ACTACTTACATCAAACGCCAGTTTACAGCAATTAGTGAAGGTGCCAAACT
GTAATCGTAAACTCATTGTAAATAGTGGGAAAACTATATTGTAGGTCATA
TGTGAGAAGTCGTTAGTTATCGATCATAGACTGCAGAGTGCTTTATCAAA
TGTTCTCTTTGGTCATAGAGATTAGCTCCTGATGTGCATAATTAGCATCT
AGTTTTGTAAATCATCACAGAGCAAAAATCATAACAATCTGTCAACCCCT
TCCTGAGCTATTCTCCTTCAAAGTCTTCAACAATATCGCCCCCTGTTGTT
CCTGAAAATATCTAAAGGGGCCCATGGGGAATAAAATAATGTCCATATGG
TGCTAAGCGTTAGCCTTAGATGGTGTTTGTGGGAAAGATCTAGCCTCTAC
CAGGCTCCAGAGGCGGATGGAAAGAGTAGAAACTGGCCATATAGACAGAA
AAACATGAAAGAGGAGTTAGTCTGCTGTAGGGGTACAGTTTGGACCCTCT
CTCCGTAGCCAACTCCCTTGGCATACTATTCACTCTATTAGGCCCATTTC
TACTATTTTTCTAGCCATCCCGCGGGGCCTGGTAGAGGCTAGGAAAGATC
GTTAGAAACATTAACTTCTTTGAGTGTGACTGTGAACAATTTTGTAAATC
AACTTGTTCCCTACAGACTGAAGCTGGACGGACAAGTAGCCGTCATTGAC
AGGCAGCTGACTGCCTTGGAGGATGAGAACAAGAAGCTAGGCCAGAGGCT
CAATGGTATCCCGAATGATCCGAAGAACATTGGAATCAAAAAGGCCATTG
CAAACTACCAGGCAATGGTATGACATCTCAATTACTATTAAAGTATTTTA
TTTTGCATTGATCTATATTTTTTCTGCCCTGTTACCATTTTATAAACACC
AACGCGCTGTGCAGTACGCCTCGAGGTTTTCTTTCTCTAAATCGTCACTT
CACTTTGTAAAGAAAGGAATACAAGTACAAAGATTCCCAAGGAATTTAGC
GGAATTCATAGGAGTTCATTCAACCAACTGCTGATCCGAGTACACAGTCA
TGTACTTCTCTTTTGTCGGGACTGTTCGAAAACACCTTGGGCAATCTTTC
TAGTGTATGAACTGGCTTCTTGTGCGTTGCTTACATTTGCTTTATTTGAC
ACATACAAAATGTAAATCTCAGACCTTTATATTGCAGGTGTTAAAGTTGG
CTCAACTGACGGAAGCTCTTCTCAAGAAGCCCTAGGATCGTCAAAGCGCT
CCACCGACATCCGTGTTGTGCTTAGAGTCGCTATTGTCATCATGTCATCT
GGTGAAAGTACAAAATTTTCAAGATTTCGGATAGGCAACTACATTTGTTT
GAACTACGTATACAAATAAAAGTCCGCTGTCCCAACAAATCTGTTTTGAG
TACAATTATTTTTGTTTAGTAAGTTATTTGGTTATTTGCTTAG Coding sequence (CDS) from alignment at Sc0000311:48651..53993+ >transcript:BL97463_cuf3 ID=transcript:BL97463_cuf3|Name=transcript:BL97463_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1098bp|location=Sequence derived from alignment at Sc0000311:48651..53993+ (Branchiostoma lanceolatum)
GAGCTAGGACCCTCCGGTTGTGATCATGAAATCGCTCGTGGTTTTTGTAG
CGAGTGTGTTAGCAGTGGCGTTCGCTCAGACGTCGACTGCAGCCAACCCG
CCCAACTTCGCCGTGAAAGAAGAAAACGGGAAATGCGTGTGGTCGTTCGC
CCTGGACAAGCCAACCGACTGAAGCTGGACGGACAAGTAGCCGTCATTGA
CAGGCAGCTGACTGCCTTGGAGGATGAGAACAAGAAGCTAGGCCAGAGGC
TCAATGGTATCCCGAATGATCCGAAGAACATTGGAATCAAAAAGGCCATT
GCAAACTACCAGGCAATGGTGTTAAAGTTGGCTCAACTGACGGAAGCTCT
TCTCAAGAAGCCCTAGGAGCTAGGACCCTCCGGTTGTGATCATGAAATCG
CTCGTGGTTTTTGTAGCGAGTGTGTTAGCAGTGGCGTTCGCTCAGACGTC
GACTGCAGCCAACCCGCCCAACTTCGCCGTGAAAGAAGAAAACGGGAAAT
GCGTGTGGTCGTTCGCCCTGGACAAGCCAACCGACTGAAGCTGGACGGAC
AAGTAGCCGTCATTGACAGGCAGCTGACTGCCTTGGAGGATGAGAACAAG
AAGCTAGGCCAGAGGCTCAATGGTATCCCGAATGATCCGAAGAACATTGG
AATCAAAAAGGCCATTGCAAACTACCAGGCAATGGTGTTAAAGTTGGCTC
AACTGACGGAAGCTCTTCTCAAGAAGCCCTAGGAGCTAGGACCCTCCGGT
TGTGATCATGAAATCGCTCGTGGTTTTTGTAGCGAGTGTGTTAGCAGTGG
CGTTCGCTCAGACGTCGACTGCAGCCAACCCGCCCAACTTCGCCGTGAAA
GAAGAAAACGGGAAATGCGTGTGGTCGTTCGCCCTGGACAAGCCAACCGA
CTGAAGCTGGACGGACAAGTAGCCGTCATTGACAGGCAGCTGACTGCCTT
GGAGGATGAGAACAAGAAGCTAGGCCAGAGGCTCAATGGTATCCCGAATG
ATCCGAAGAACATTGGAATCAAAAAGGCCATTGCAAACTACCAGGCAATG
GTGTTAAAGTTGGCTCAACTGACGGAAGCTCTTCTCAAGAAGCCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000311 | genome | Sc0000311:48651..53993 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97463_cuf3 |
| Biotype | protein_coding |
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