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transcript:BL97463_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97463_cuf3
Unique Nametranscript:BL97463_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97463_cuf3

>transcript:BL97463_cuf3-protein ID=transcript:BL97463_cuf3-protein|Name=transcript:BL97463_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=121bp
ELGPSGCDHEIARGFCSECVSSGVRSDVDCSQPAQLRRERRKREMRVVVR
PGQANRLKLDGQVAVIDRQLTALEDENKKLGQRLNGIPNDPKNIGIKKAI
ANYQAMVLKLAQLTEALLKKP
Run BLAST on NCBI

mRNA from alignment at Sc0000311:48651..53993+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97463_cuf3 ID=transcript:BL97463_cuf3|Name=transcript:BL97463_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5343bp|location=Sequence derived from alignment at Sc0000311:48651..53993+ (Branchiostoma lanceolatum)
CTGAGCTAGGACCCTCCGGTTGTGATCATGAAATCGCTCGTGGTTTTTGT AGCGAGTGTGTTAGCAGTGGCGTTCGCTCAGACGTCGACTGCAGCCAACC CGCCCAACTTCGCCGTGAAAGAAGAAAACGGGAAATGCGTGTGGTCGTTC GCCCTGGACAAGCCAACCGGTAAGTCGTTCTGTCTTTTCGTGCCAGCACT AATACTGTGTAAGAAGGTGTTTGTCTGCAAACAGTATCTAACTACAGCGT TCGATCTAAAAACCTCGGTACTTACGCAGTAGTTAAGGAATATGCTTGTT CAGTGTAAGGGCGGTCGGTGGTCAGTCCAATGGACATGATATTTATTTCC ACCCCGTTTCCAGTGTGTATGTAACAGCCCTGAGACAATGTGATTAGATG TTTGTATGTTTATTTGTTGATAAGTCCAAACGTCCAACCCAGTGGTATCG CCATGACACATAATCAAAGATTGCGAACGTGTCATAAAGTTTAAAGAACA TTTGCAAAAGCTTCACAGCGCCAACATTTGTCCTGATATTTGACGGCGTA GATGAACTATGGTTTTTAATTAACAGTTATGTGAATGGAGGATCTAGGAA GTTTGAATTTTTTTACGTTTTTTAAATGTCCTTCCTGTGAAATCTGCATT GGAATGTGTTCCGTTATATCTTATATTTCATTCAAATCAAAGCCCGGGTC AAATACATCGTACGATCGGGTTTTTGTCGGTGGCGTTAGCGCCGCACGTC GTACGTTTGAGAAGCAGTTGTGCGCATTATGCAATAATTTACAAAAGCCC CTGTCACAGTTGTGCGTATATACAAACCAGAATGAGTTGCGTATTAAAAT GTTTTTGGTTTAGGTTAAGTTTGCAGCCGAAAAAGTAATTTCTTTGGTTT GATAACTAGACTGCTCAACGATGGGTCAAAGTAGAAAACAACTTCCTCCT CGCAAAATTTACTTAAACCAAAAAAATGTTACTGCGGAACTCATGCGCAC TTGAATACACGCACAGGTGTGACAGGGCCCTAAGGAGAGCGTATTTGGGT AAATCGCAGGTAAAATCAGCCACCTCCGAGCGTCGTGCGACGGAAACAGC AAACCAAAAGGATCTGAGCATGTTCAAAATTATCTCGAGAACGGCTTTTA TAGCCTTCATAGTAGGCTGCACTGCGTTTGTGTTCTACTGAAGAGGTAAT AGACTAATTTCAGGCTGCTGACAGCCTGATTTTGTTCGCGATTGATACGC AATTTCTGTCATACTTGTGCGTATATTCAAGTGCGCGTGAGTTGCGCATT AAGATTTTTGGTTTAGATAAGGTTTGCGGGAAAAAGTTGTTTCTACTTTG ACCCACCGTTGTGCAGCCTAGTGATCGAACCTAAGAAATCACTTATTCGG CTGCAAACTTAACCTCCACATGTTAATACGCAACTCATGCGGACTTGTAT ATACGCACAAGTGTGACGGGGGCTTATAGCACGATGTATATGATCGGGAC TGCGGCACGTTGGCGGTCTCGCCGCGACCTATATTGTATTTATATCACCC TTGACTTTATAATGAGAATATTATGAAAATGTACGAGTACAACTAAAAAA CAAAAATCAAACAAAGCGTACAAAATATTTTAGAATCGATGTGATTCGTT GAGCGCTCAGTCAAGTCGCTAGGCCGCAGCGAGGTCGCCAACATCTATGT GAATGTCCAGCCAGATACCCACTTTAAGGACGTTAATATTGAAATTACAA AATGTACTTGGTTGTTTGTCACAGCGTTCTTGTGAAAATTATGACTGTAA CACTTCATGCTAAAGAACGCTGTTTTGTGTGTGTTGGAACGAAGGCGGCT GTCCAAAGACCGAGAAGCCGGGTCAAGTCGTGAAGGACCTGGCGGCGGAT ATCGCCGGGCAGAAGGCCAGACAGGCAAAGATGGAAACTCAACTACCGCT TGACAAAGCCAGCATCCAAAGTAGAATCACCATGACAGAAGTGGAACGGT AGGTATGACATGGGAGCCGGGAAGTCCATGGGAACGCTGGGTTGTTTTAT CAAAGCACTAGAAGTCTCTTAAAGGCAACCAAAGCAATATTAGGGCAATA AAATTGACATGAAAAAAAAAACACTGTTAAGCACATTTGCTCAATAACTT CATACTTTGAGCATTTCTAAACCGTGCAAAAATGTGCCGTACGATGATTC CCTTAGTTTCGTGAGCCTACAAAAACTCCGGCGACGATTTTCAGTGAGTT CTCACATCACAACGTCGTCATATTTTTGCACCATAGACGTCGCTATACAT TGTGATAGTGTTGTTTGAACTAATCATGTATAGAAAGTACTAAATAAATT GACTTTCAAAATCCGATTTTCGGGCCCTATGTATTCCTTGACCTTGGGTT GCCTTTGATGCCGAAGTAATTACGACAATACACATCGTAGAAACTAAGAA AAAGCAGAAATGTAGTATTTGCAAGCAAATACATAATATTTACCTTCACG CAATCTAACCTAACAAACTACTGCTCTGTTTATTCTTACTCAAACACATT CATATTTGATAACCAGTTCCTGTCCTGCCACTTGCTACACTACCAGTAAC CATGGTGACAGTTGTCTGGTCCAGGTCATTGACCTTATATGTATTATTTC AGTATTGAGTTATGCTATGATTTAATATCTAATTCTTATATGCAATCAAT TATTATTTTGTCATCATTTTGTTACTATTATTATCGTATGATTTGATGTG ATATTGCTATCACTTATTACTATAATTATGTTATAAATTCTTCGATTAAT ATTATTTTTTTGCTTATGTTTCGTTAACTGTGATGGACTTTCTAATCTCT ATTATTTCAGTATCGAGTTATGGTATGATTTGATATATAATTTTTATATG CGACCAATTACTATTTTGTCAGCATTCTGTTACTATTATTATTGTCTGAT TTGTTATTGTTATCACTTACTACTATAATTATGTTATGAATTGTTAGATT TATGTTATTTTTTGTTAATTTAGATGGGGGAAGACCTTGTATAATCCATC ATGTTTTTGTTCTTTCCCCAGCACGTGAATTTTTTGTTATATTCTGTTCT ATTCTATTATGTAATACAAACTGATTTTATATGTGCAAATGAATAAATCA AATCAAATCAGTACACGAGATACGCGTTTGCATGTGAGCCACACAAAAAA ACGTTGCTACAACACTTGATACGTATGTTTGTTTATTTATTAATAGTTGC GCCAGTGTGTTTGACGTAATTTAAAGCCGACAGTATTAGTCCAGAGGGAA AACTATTTTTGTATGATCTGTGTCTATCAGAATATTTTCAAAACTCGCAA TGACGTATGAAGTAAAGCAGTCATCCTCAATTGAGGTGAAGCATAATGAC GTGTGTCTGGTACAGGTCATTGACCTTATATGTTTGGAGAAGAAGAAGAA ACTGATCAAAACGAATCTCCATTTCGTGAGGGTAAACATAAGAAACCAGC AAAAGATTTTTTTCGTTTCTCATTTAGACAATGACCTTTCTGCAAACAAA ATTATCTAGAATCCGCTGTCAGAGTCTTCTTGCAAAGATTAGGGACACAG ACTCCCCCCCCCCCCCCCTTACCCAGTCTGCTTTGCTGCCCCTGCAGTCC CACAAACAAATACAGCAACACTGGAGATGTATGGCACAAAGCTGCGTTCT GTTTGTTGTGAAACACAGAAACACAAGAAGGAAGACAAACAAACATGCAG ACAGACAGATAGACAGACGGACCACATAACATTCCGCTCGTGAAGTACAA GTCAAATAGATGCAGTTGCCAGTTGGCCATTTTGTTCCAATGCCGAGTTC TACCCCCATATAACAATGATTTAGAAATTGGCTTGCTCAGTGAGTCGGGA ACTACTTACATCAAACGCCAGTTTACAGCAATTAGTGAAGGTGCCAAACT GTAATCGTAAACTCATTGTAAATAGTGGGAAAACTATATTGTAGGTCATA TGTGAGAAGTCGTTAGTTATCGATCATAGACTGCAGAGTGCTTTATCAAA TGTTCTCTTTGGTCATAGAGATTAGCTCCTGATGTGCATAATTAGCATCT AGTTTTGTAAATCATCACAGAGCAAAAATCATAACAATCTGTCAACCCCT TCCTGAGCTATTCTCCTTCAAAGTCTTCAACAATATCGCCCCCTGTTGTT CCTGAAAATATCTAAAGGGGCCCATGGGGAATAAAATAATGTCCATATGG TGCTAAGCGTTAGCCTTAGATGGTGTTTGTGGGAAAGATCTAGCCTCTAC CAGGCTCCAGAGGCGGATGGAAAGAGTAGAAACTGGCCATATAGACAGAA AAACATGAAAGAGGAGTTAGTCTGCTGTAGGGGTACAGTTTGGACCCTCT CTCCGTAGCCAACTCCCTTGGCATACTATTCACTCTATTAGGCCCATTTC TACTATTTTTCTAGCCATCCCGCGGGGCCTGGTAGAGGCTAGGAAAGATC GTTAGAAACATTAACTTCTTTGAGTGTGACTGTGAACAATTTTGTAAATC AACTTGTTCCCTACAGACTGAAGCTGGACGGACAAGTAGCCGTCATTGAC AGGCAGCTGACTGCCTTGGAGGATGAGAACAAGAAGCTAGGCCAGAGGCT CAATGGTATCCCGAATGATCCGAAGAACATTGGAATCAAAAAGGCCATTG CAAACTACCAGGCAATGGTATGACATCTCAATTACTATTAAAGTATTTTA TTTTGCATTGATCTATATTTTTTCTGCCCTGTTACCATTTTATAAACACC AACGCGCTGTGCAGTACGCCTCGAGGTTTTCTTTCTCTAAATCGTCACTT CACTTTGTAAAGAAAGGAATACAAGTACAAAGATTCCCAAGGAATTTAGC GGAATTCATAGGAGTTCATTCAACCAACTGCTGATCCGAGTACACAGTCA TGTACTTCTCTTTTGTCGGGACTGTTCGAAAACACCTTGGGCAATCTTTC TAGTGTATGAACTGGCTTCTTGTGCGTTGCTTACATTTGCTTTATTTGAC ACATACAAAATGTAAATCTCAGACCTTTATATTGCAGGTGTTAAAGTTGG CTCAACTGACGGAAGCTCTTCTCAAGAAGCCCTAGGATCGTCAAAGCGCT CCACCGACATCCGTGTTGTGCTTAGAGTCGCTATTGTCATCATGTCATCT GGTGAAAGTACAAAATTTTCAAGATTTCGGATAGGCAACTACATTTGTTT GAACTACGTATACAAATAAAAGTCCGCTGTCCCAACAAATCTGTTTTGAG TACAATTATTTTTGTTTAGTAAGTTATTTGGTTATTTGCTTAG

Coding sequence (CDS) from alignment at Sc0000311:48651..53993+

>transcript:BL97463_cuf3 ID=transcript:BL97463_cuf3|Name=transcript:BL97463_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1098bp|location=Sequence derived from alignment at Sc0000311:48651..53993+ (Branchiostoma lanceolatum)
GAGCTAGGACCCTCCGGTTGTGATCATGAAATCGCTCGTGGTTTTTGTAG
CGAGTGTGTTAGCAGTGGCGTTCGCTCAGACGTCGACTGCAGCCAACCCG
CCCAACTTCGCCGTGAAAGAAGAAAACGGGAAATGCGTGTGGTCGTTCGC
CCTGGACAAGCCAACCGACTGAAGCTGGACGGACAAGTAGCCGTCATTGA
CAGGCAGCTGACTGCCTTGGAGGATGAGAACAAGAAGCTAGGCCAGAGGC
TCAATGGTATCCCGAATGATCCGAAGAACATTGGAATCAAAAAGGCCATT
GCAAACTACCAGGCAATGGTGTTAAAGTTGGCTCAACTGACGGAAGCTCT
TCTCAAGAAGCCCTAGGAGCTAGGACCCTCCGGTTGTGATCATGAAATCG
CTCGTGGTTTTTGTAGCGAGTGTGTTAGCAGTGGCGTTCGCTCAGACGTC
GACTGCAGCCAACCCGCCCAACTTCGCCGTGAAAGAAGAAAACGGGAAAT
GCGTGTGGTCGTTCGCCCTGGACAAGCCAACCGACTGAAGCTGGACGGAC
AAGTAGCCGTCATTGACAGGCAGCTGACTGCCTTGGAGGATGAGAACAAG
AAGCTAGGCCAGAGGCTCAATGGTATCCCGAATGATCCGAAGAACATTGG
AATCAAAAAGGCCATTGCAAACTACCAGGCAATGGTGTTAAAGTTGGCTC
AACTGACGGAAGCTCTTCTCAAGAAGCCCTAGGAGCTAGGACCCTCCGGT
TGTGATCATGAAATCGCTCGTGGTTTTTGTAGCGAGTGTGTTAGCAGTGG
CGTTCGCTCAGACGTCGACTGCAGCCAACCCGCCCAACTTCGCCGTGAAA
GAAGAAAACGGGAAATGCGTGTGGTCGTTCGCCCTGGACAAGCCAACCGA
CTGAAGCTGGACGGACAAGTAGCCGTCATTGACAGGCAGCTGACTGCCTT
GGAGGATGAGAACAAGAAGCTAGGCCAGAGGCTCAATGGTATCCCGAATG
ATCCGAAGAACATTGGAATCAAAAAGGCCATTGCAAACTACCAGGCAATG
GTGTTAAAGTTGGCTCAACTGACGGAAGCTCTTCTCAAGAAGCCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97463gene:BL97463Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97463_cuf3transcript:BL97463_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97463_cuf3-E1BL97463_cuf3-E1-1564476830-432696Branchiostoma lanceolatumexon
BL97463_cuf3-E2BL97463_cuf3-E2-1564476830-432698Branchiostoma lanceolatumexon
BL97463_cuf3-E3BL97463_cuf3-E3-1564476830-432701Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000311genomeSc0000311:48651..53993 +
Properties
Property NameValue
Transcript idBL97463_cuf3
Biotypeprotein_coding