transcript:BL97450_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97450_cuf7
Unique Nametranscript:BL97450_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97450_cuf7

>transcript:BL97450_cuf7-protein ID=transcript:BL97450_cuf7-protein|Name=transcript:BL97450_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=116bp
LLPRTMEGAANMAVTAQRETLLTVALDHNLVGFLTSCITQWAEGEYAHAG
CTLRTVLDWAWNKIASIKFSLDKTCVPLYDGSGSILDQQTLQLLDHHALQ
LNHMVTVFHTLALQPA
Run BLAST on NCBI

mRNA from alignment at Sc0000010:5449811..5453300-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97450_cuf7 ID=transcript:BL97450_cuf7|Name=transcript:BL97450_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3490bp|location=Sequence derived from alignment at Sc0000010:5449811..5453300- (Branchiostoma lanceolatum)
CTGCTGCCCAGGACAATGGAGGGAGCTGCTAACATGGCTGTGGTGAGTAT
TGGATGCAGGGCTCTAAATGCATTTCTGACACCAATGCCCTGAATTTAAA
CATGATTCACTCTCTCCTCAAAAACGGGTCGAAGATAAGCAAATGCAAAC
TCGAAACACTGATAGATACAAAATTATGATTTTATGTATTTTCACTGTTA
ACTCTTTGATTACCCTTAGTGTATGATTTTTACCCTTTTTATAATTTCTT
TGTATTGTTTTCTCCTTCCTATATCTTTGTTTGACTTTGAATGCCTTTCC
ACAAAGAGAAAGAGAAAATAAAGAGGGAAAAAAGATAAGGAGAAAGAAGA
AAGAGCGCAAAACAAAAATACACTGCCTAAGTTACACATTGTACAGAATT
TCTGTGTCGTTACTGTATGATTTGGCCCTTCCCATTTCCTTTCTAGTATG
TTTCCTTTGCAATGTTGTTTTCCTTTCTGTGTCCCTCAATCTCAGCTACA
AAGAGTTTTCAGTCAGGGCAGGGCCAGTAGTGGAGCCCAACATAAGACTG
ACAAGGGGGACCAGGTAAAATATCAACAACTAACAAATCCAACCCTAACC
CCCGCTAATTCTCTCAACACTAAACAACACCCCAACCCCCCTCCCACTCT
AATTCTCTCAACACTAAACAACACCCCAACCCCTCCCCCCTCTCTCTTAA
TCTGATGTCCACATACAATGCAGATAAGGAAAAATTTTAACACTTACATG
TAAAAGTACCCACCCCCCCTCCTTAATTTGGTGTTTACATATGTTGGTTG
ATATCGATGGGCTATTGTAACAAGGTTGTTCTGTGTAACTTCACAAATTG
TAATGCATGGGCCTTGTGTTTATATATTGAAGCAATGAAGGTGAAGGGTG
GACTCTTGAATTTACAAGGCTTAAATATCACAATTGTCAGTATCGACTTA
GACGACATTGTGTTTTGGGAGACTAATTACATGCATGCATGGTGCAAGGA
TGTCCAAAAATGTTAAACATCGTATAACAACCCCCCCTCCCCCAGAACTA
CATGTGACCATTCCCACATGTACTGCAATGCCGGGGTGTGGACCTTGGTA
AAGGGTTCTACCAAGACACTGTCCACTAGTTTAAAGAAAAAAAAAACATT
GCATAATACACAGCCAAATGTGCACAACTAACCTCCACATGCATGCCATG
GCCACTGACTTAGTGTAGCATGTCACTTCCCAGCAAGTTTGCAATTCTGT
CCTATCACATTCCACAATTCCACATTAACAGCTCCCTATACCAACCCCTC
TCTTTGTGTTGTGTTTGTGTGTTCAATGTATAGGTAAAGATTTACTTTCA
TCCACAATGAGATATGAAGGAAAATAAAAGTTGTGATTGCAATGGAGGAA
TGTATATAAATGATAGTCACAGTGTTATGTGTATGTTGTGGTGACATTTC
TTCATATAAAGAAAAAAATATTGCATTGAAAGCATTGAAAAAGGTAATGA
TTTTTTCTATCAAACCAGCTTTTACAACATGGTACAAAATTGTTCGTAGA
TGTGACTCTGTGTGAGTGAGCAAGAAACACTCTGCTAAAAGTGTTATGTT
TTACTCCGCTCTCTTATTTTCCTAGAAGACTTAAAGAGACACTAAAGGTT
CCGAAAATAATTTCATCAGGTTGGTAGAACATAGAGTATTGGAGATTCTT
TTTACACAACCGGTAATTCTCACCTGCTGACGTTTCGGTGTCTGTCAGAC
ACCTTCTTCAGAGCTTCTGACTGGAAAAGAATCTCCAATACTCTAGAAAC
TAAAGGTATATTGAGAATATTAAAGTGTTTGTTTCCCTTTAATGTTTGTC
CCCCAGACTGCCCAGAGAGAGACCCTGCTGACCGTAGCGCTGGACCACAA
CCTGGTCGGGTTCCTCACATCATGCATCACTCAGTGGGCAGAGGGAGGTC
AGTCTTAGAGGAGGTCTTAACGCGCCTTCTGGGAATTTCTTACTGTAAAT
GCAGAAATGTTTGCAGTGGTTTTATGTTCGCAGTTTTCGCGGTGAACTTT
CAGCGCAAGCTTAAAACCACCGCGAAACTTTTTGCCCACCTATGACTGTA
GCACTACTATTGTTTCAAATGTGAACTTAAATTTACCGCGAACACTCCAT
TTTCTCCCTACCGCGAAATAAAAACCACGCGAACCTAAATGCATTTACAG
TATTTGGTTGTCGAGGTCCTTGTGGAGGATGATGAACCATCAGTTGGCCA
GTGAAAGAAATGATTAATGTATGTGGAGTAACTGTTATGATAGGTGCCCC
CCCCCCCCCNNNNNNNNNNNNNNNNNNGCCCCCCCCCCCCCCACAGTAGA
AGATGGTAGGACCCAAGAAAAGAAGAGAGCCCCATGGCTGGTGTCAGTTA
CCAGGGAGAGAGGCCAGAGGAGTTTGGCTATGTGATTAGTGGAAGTAATG
TAGTGTGTAGAGATCTTTGCGTGTTCGCTTGATGATTTGAAAGGGCCTTT
TTGCCAACAGTAACATCTGCCAATTGAAAGTAAAGACTGCTGCATTAAAA
ATCAAAGTTATCAAGGCCTTCTCAAGAATGTCCTGGATGTCTGAAGTCTG
CATACCTTAAGAATTACTGATGCTGCATTAGTGCCTGCATGTAGATCTCT
TTGATTTCACCAGTTTTTGCACGTGAAACTGCCATCAATGCACACAATGT
ATCACACTAACAGTCATGTACATGTACATGTCCCTTCCCCTCCAGAATAT
GCCCATGCCGGCTGCACCCTCAGGACTGTACTGGACTGGGCATGGAACAA
AATCGCCTCCATCAAGTTCTCCCTCGACAAAACATGTAAGTCTGGTATTT
ATAATCATAAATATTAACAACAATTTTCTTTTCCCCATCATCTGGGGGTT
TGACGTGCTTGCATGCTGATGGGGGAGCTTGGTGGCCGCTCGCCAGGTGC
CTCTGTCCTGTGGATTCACATTGTGTAGGTTGAGGTGGTGGAGGTCCTCC
TTATCAATCCACCTCTTCCTTGGTCGTCCTCGTGGATTTCGGCCCTCCAC
GGTCATGCCGATGATTTTCTTGGGCCACCTCTCCCTGTCCATTCTTTCAA
GATGCCCATCCCAGCGTAGACGATTGGATCTTAAAAGAATATTTATTACC
GTAACACTTGGTCCCAGCCCTCTTGTGGGTCAGATTGCGCTCTGCCTTTA
GGCGCTTCAACCTATGGTCAGGCCGGAACCTTGTTGTATTCTTAATGCAC
ATACAACAGAAACTGACGTTATTGTCGCCCCGTCAGGTGTTCCGCTCTAC
GACGGGTCCGGCAGCATCCAGAAACTGATGTTGTTGTTGTTGATGTTGTT
GTTGTTCCATCAGGTGTTCCGCTCTACGACGGGTCCGGCAGCATCCTAGA
CCAGCAGACCTTGCAGCTGCTGGACCATCATGCTTTGCAGCTGAACCACA
TGGTGACGGTGTTCCACACCCTGGCCCTACAGCCGGCACC

Coding sequence (CDS) from alignment at Sc0000010:5449811..5453300-

>transcript:BL97450_cuf7 ID=transcript:BL97450_cuf7|Name=transcript:BL97450_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=1392bp|location=Sequence derived from alignment at Sc0000010:5449811..5453300- (Branchiostoma lanceolatum)
CTGCTGCCCAGGACAATGGAGGGAGCTGCTAACATGGCTGTGACTGCCCA
GAGAGAGACCCTGCTGACCGTAGCGCTGGACCACAACCTGGTCGGGTTCC
TCACATCATGCATCACTCAGTGGGCAGAGGGAGAATATGCCCATGCCGGC
TGCACCCTCAGGACTGTACTGGACTGGGCATGGAACAAAATCGCCTCCAT
CAAGTTCTCCCTCGACAAAACATGTGTTCCGCTCTACGACGGGTCCGGCA
GCATCCTAGACCAGCAGACCTTGCAGCTGCTGGACCATCATGCTTTGCAG
CTGAACCACATGGTGACGGTGTTCCACACCCTGGCCCTACAGCCGGCACT
GCTGCCCAGGACAATGGAGGGAGCTGCTAACATGGCTGTGACTGCCCAGA
GAGAGACCCTGCTGACCGTAGCGCTGGACCACAACCTGGTCGGGTTCCTC
ACATCATGCATCACTCAGTGGGCAGAGGGAGAATATGCCCATGCCGGCTG
CACCCTCAGGACTGTACTGGACTGGGCATGGAACAAAATCGCCTCCATCA
AGTTCTCCCTCGACAAAACATGTGTTCCGCTCTACGACGGGTCCGGCAGC
ATCCTAGACCAGCAGACCTTGCAGCTGCTGGACCATCATGCTTTGCAGCT
GAACCACATGGTGACGGTGTTCCACACCCTGGCCCTACAGCCGGCACTGC
TGCCCAGGACAATGGAGGGAGCTGCTAACATGGCTGTGACTGCCCAGAGA
GAGACCCTGCTGACCGTAGCGCTGGACCACAACCTGGTCGGGTTCCTCAC
ATCATGCATCACTCAGTGGGCAGAGGGAGAATATGCCCATGCCGGCTGCA
CCCTCAGGACTGTACTGGACTGGGCATGGAACAAAATCGCCTCCATCAAG
TTCTCCCTCGACAAAACATGTGTTCCGCTCTACGACGGGTCCGGCAGCAT
CCTAGACCAGCAGACCTTGCAGCTGCTGGACCATCATGCTTTGCAGCTGA
ACCACATGGTGACGGTGTTCCACACCCTGGCCCTACAGCCGGCACTGCTG
CCCAGGACAATGGAGGGAGCTGCTAACATGGCTGTGACTGCCCAGAGAGA
GACCCTGCTGACCGTAGCGCTGGACCACAACCTGGTCGGGTTCCTCACAT
CATGCATCACTCAGTGGGCAGAGGGAGAATATGCCCATGCCGGCTGCACC
CTCAGGACTGTACTGGACTGGGCATGGAACAAAATCGCCTCCATCAAGTT
CTCCCTCGACAAAACATGTGTTCCGCTCTACGACGGGTCCGGCAGCATCC
TAGACCAGCAGACCTTGCAGCTGCTGGACCATCATGCTTTGCAGCTGAAC
CACATGGTGACGGTGTTCCACACCCTGGCCCTACAGCCGGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97450gene:BL97450Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97450_cuf7transcript:BL97450_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97450_cuf7-E1BL97450_cuf7-E1-1564476830-100225Branchiostoma lanceolatumexon
BL97450_cuf7-E2BL97450_cuf7-E2-1564476830-100223Branchiostoma lanceolatumexon
BL97450_cuf7-E3BL97450_cuf7-E3-1564476830-100221Branchiostoma lanceolatumexon
BL97450_cuf7-E4BL97450_cuf7-E4-1564476830-100219Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:5449811..5453300 -
Properties
Property NameValue
Transcript idBL97450_cuf7
Biotypeprotein_coding