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transcript:BL97449_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97449_cuf0
Unique Nametranscript:BL97449_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97449_cuf0

>transcript:BL97449_cuf0-protein ID=transcript:BL97449_cuf0-protein|Name=transcript:BL97449_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=193bp
VAENEPFVGTPVTPRCAPRVREASKVIYPSLDEMLAEAQEETPVKALLTS
PGRRPRTSPVGLLERLRRHTVNLGGDALSLLSTPPVKRRRASYAQHLPEA
PPQQTPPSILKVRRAVRKSVSPQASEARTRQATGSISDFAMPTPPRYQRR
TISIAEPPKEQKETPRKIRFAAETPGLPPSPDVFDPPSFPEER
Run BLAST on NCBI

mRNA from alignment at Sc0000010:5417162..5420229-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97449_cuf0 ID=transcript:BL97449_cuf0|Name=transcript:BL97449_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3068bp|location=Sequence derived from alignment at Sc0000010:5417162..5420229- (Branchiostoma lanceolatum)
GTGGCAGAGAACGAACCATTTGTAGGAACTCCTGTCACACCTCGGTGTGC GCCAAGAGTCAGGTAATATCTCCATCATCATTCGTTATACAACTTACATC TTACCTAGTGCAGCTATGCAGGATCATCCTTTATCATAAAGCTTTTCAAG CCATAGCAAGTCATACCATAACGTGTGGCTTCTCCCCCCACCAGGGAGGC CAGTAAGGTGATCTACCCCAGTCTGGATGAGATGCTGGCGGAAGCTCAGG AGGAGACACCTGTGAAAGCCCTCCTCACCTCACCTGGGCGACGCCCTCGC ACCTCACCTGTGGGACTGCTGGAGAGACTCAGAAGGTGAGGAAATAGATA AGTAGCACTCCTGACTTTTGTATAGCACAATATTCGTCTCCCTCAGTGTG TGAGTGTGTGTTTGTGTGAGAGTGAGTGAGTGAGTGAGTGAGCGTGTAAG TGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTG AGTGAGTGAGTGAGTGAGTGAGTGTGCATTTAGACCGAAACATGATTTAC ACTGAAACCACCACACACCAACTTATTCCACTGTACATACATGTATACTA AGCAAGCATAACATACATGTACATACATGTATAGAGCACCCAGGTCTACA AAGTCTTTTATTCTGCTGTCTAAGAAAAAAAAGTCAAACCTAATAAGTAA GAATTTAGAGTCAGCATTTAGACTAGTGAGAGTAGACACATGCTATACTG TTCTACAATACATGTATGTGTCTGTCCTTTTCTTGCTACTTGCAATTAGC CCACGGGCACGAATTTGCAGTAAATGTACTTTACATTTATTTAATTTTTT TCCCCCAGGCACACAGTAAACCTGGGCGGAGACGCCCTGTCCCTGCTGTC CACCCCCCCAGTGAAGCGTCGCCGCGCCTCCTACGCCCAGCACCTGCCCG AGGCACCCCCCCAGCAGACACCCCCCTCCATCCTCAAGGTGCGGAGGGCT GTCAGGAAGTCTGTCAGTCCTCAGGCATCGGAGGCAAGGACCAGGCAGGC TACAGGTGAGGGTGACTTTCTTGTATACGTCAGGGTAAAGACTACGGTCT GGTAGAATCACCGATTCTGCCGGTAGAGATCCTGATCGGGGTCTCTGTCG ACATGGACTCCGATCAGGATCTTCACACTATAACAGCAACACCTAGCTGC AGTGCAAAGTAGAACCTGTGACCTGAGGAAGGTCAGGCCTCGAAATTAAC TTTTTCCCCTACTGTCCCAACATTGTCCCAAAAATGGATTTCAACTGTCC CGAAAGTGTCCCGAAGTGTCCCAACCAGGGCCAAAGATCTGAACTAAGTG GGGAGTCCGGTTTCGGTTCCAGAGGTTCATGTTCAGGTTCGGACCTATAC TCAAGTCTGAACCTGAACCCAAGCCATGGCATATGTGTGTTAGAATATTT TTTCTGTAATATAAAAAATTGCATATTGGCAAACAAATTGCATGAAATTT GAAAAGTATAATACCTGCAAAATTATATTCAGTTAAGTTCTAACAAAGTT AACAACCTGAAATAATGTATTTTAATAGGTTATAAAAGAAAAGGCATAAT TCTGAGTTTAAGGACTTCATTGATGTGGTGGTTCTTGGGGAGGTAGAATA AATCCTAAAAAATGTTTGATTTCCATTCTGCCATTTTCTTCATAAAAGCC TCCTTGTTCACTGTCACATTGCTGTAAGCCTCCAATCTGATCGATCTGGC ACCAATTATAATGTGCATCAATACCAAGGAGGTTAAAATCCTATTCTAAC CTCCTTGATCAACACCATCAAAATCAATATAAATTTCCCATTTTTTTCCA TCTTTGAAAACTGTTATCTTTACCTGAACAACTTTCTGACACAATGAGAG ATTTTCGATAAATTTGCAGACAGGGATTTAGGATTCTTTGATGGTTTAGG AATATTGTCAGACTACAGAACTGTACTAGTAGGTCTTGCAGGGCAAACCT TAAATCAAGTTAATGAGGTGTGACCATCCCTCTGCTGACCCCCTGTCAGG GGTGTGTCACCGGACCAGTCTACAGTTTCACAAGGGAGGTATCAAGGGAG GAGCACGATGCAACCGGAAAATCAAATCCAGTCGCACAGCAGCCTGATTT CCAGGCGTCAACCAAAGTCGCACTCAGGAGCCCTGGTTGTCCCAAAGATG TCCCAAATTGATTTTTCAGTTGTCCCGGGTCAAATTTTGGTGGCCCCGGG ACATCGGGACATGGTTAACTTCGAGCCCTGAAGGTGACAGACGGTCACCG AAACGTCGGAAGTTGATTAGTATATGTACTGGTGTGTGCACAGAACTTTC TTATCCAGTCCTGTTGATTGCTGTAATTCACTTTATCTTCATGATAGCAA AATTTCATGATGTAACGAAAATGGACACGGTGGCGGCAAGTGTTTTACAC AACAAATGTNCACAACGAATGTGTGAAGAAATCGTGAATAATAACAACAG GTTTTTTCACATTCACGGTACAGAGGTGACCGTGAAAAAAGTTACAGTGA AAGAAACAAGAATTACAGTATATATAAAAATCCCATCCCCGCACAGGTTC CATCTCCGACTTCGCCATGCCCACCCCTCCGCGGTACCAGAGGAGGACCA TCTCGATCGCTGAGCCGCCCAAAGAGCAGAAGGAAACCCCGAGGAAGATC CGCTTCGCCGCAGAAACTCCCGGCCTGCCGCCCTCTCCTGATGTGTACGT CTGAACTCTTACTTATCATCTTAACAACCACCCTGTAAGGCCATCTTGTT TTTATTATACGGATGAAATCTGCACAAGCTTCAAGTTCCGTCCATACAGT AAATCATACAAAGCAGCCGGAAAATGAAAAAATATATCCTGTACATTGTG AAACAAATATTTCAAAAAACAAATACTAATATCATAGAATGCCAAAGTCA GTTCCACTTCAAAGAAGATGTGAAAGAACAAAAGTGAAGAATCTATTTTT CGGTATACCATACTCTGTGTGTTCATCTCCCATCAGGTTTGACCCCCCGA GTTTCCCGGAGGAGAGAG

Coding sequence (CDS) from alignment at Sc0000010:5417162..5420229-

>transcript:BL97449_cuf0 ID=transcript:BL97449_cuf0|Name=transcript:BL97449_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2895bp|location=Sequence derived from alignment at Sc0000010:5417162..5420229- (Branchiostoma lanceolatum)
GTGGCAGAGAACGAACCATTTGTAGGAACTCCTGTCACACCTCGGTGTGC
GCCAAGAGTCAGGGAGGCCAGTAAGGTGATCTACCCCAGTCTGGATGAGA
TGCTGGCGGAAGCTCAGGAGGAGACACCTGTGAAAGCCCTCCTCACCTCA
CCTGGGCGACGCCCTCGCACCTCACCTGTGGGACTGCTGGAGAGACTCAG
AAGGCACACAGTAAACCTGGGCGGAGACGCCCTGTCCCTGCTGTCCACCC
CCCCAGTGAAGCGTCGCCGCGCCTCCTACGCCCAGCACCTGCCCGAGGCA
CCCCCCCAGCAGACACCCCCCTCCATCCTCAAGGTGCGGAGGGCTGTCAG
GAAGTCTGTCAGTCCTCAGGCATCGGAGGCAAGGACCAGGCAGGCTACAG
GTTCCATCTCCGACTTCGCCATGCCCACCCCTCCGCGGTACCAGAGGAGG
ACCATCTCGATCGCTGAGCCGCCCAAAGAGCAGAAGGAAACCCCGAGGAA
GATCCGCTTCGCCGCAGAAACTCCCGGCCTGCCGCCCTCTCCTGATGTGT
TTGACCCCCCGAGTTTCCCGGAGGAGAGAGTGGCAGAGAACGAACCATTT
GTAGGAACTCCTGTCACACCTCGGTGTGCGCCAAGAGTCAGGGAGGCCAG
TAAGGTGATCTACCCCAGTCTGGATGAGATGCTGGCGGAAGCTCAGGAGG
AGACACCTGTGAAAGCCCTCCTCACCTCACCTGGGCGACGCCCTCGCACC
TCACCTGTGGGACTGCTGGAGAGACTCAGAAGGCACACAGTAAACCTGGG
CGGAGACGCCCTGTCCCTGCTGTCCACCCCCCCAGTGAAGCGTCGCCGCG
CCTCCTACGCCCAGCACCTGCCCGAGGCACCCCCCCAGCAGACACCCCCC
TCCATCCTCAAGGTGCGGAGGGCTGTCAGGAAGTCTGTCAGTCCTCAGGC
ATCGGAGGCAAGGACCAGGCAGGCTACAGGTTCCATCTCCGACTTCGCCA
TGCCCACCCCTCCGCGGTACCAGAGGAGGACCATCTCGATCGCTGAGCCG
CCCAAAGAGCAGAAGGAAACCCCGAGGAAGATCCGCTTCGCCGCAGAAAC
TCCCGGCCTGCCGCCCTCTCCTGATGTGTTTGACCCCCCGAGTTTCCCGG
AGGAGAGAGTGGCAGAGAACGAACCATTTGTAGGAACTCCTGTCACACCT
CGGTGTGCGCCAAGAGTCAGGGAGGCCAGTAAGGTGATCTACCCCAGTCT
GGATGAGATGCTGGCGGAAGCTCAGGAGGAGACACCTGTGAAAGCCCTCC
TCACCTCACCTGGGCGACGCCCTCGCACCTCACCTGTGGGACTGCTGGAG
AGACTCAGAAGGCACACAGTAAACCTGGGCGGAGACGCCCTGTCCCTGCT
GTCCACCCCCCCAGTGAAGCGTCGCCGCGCCTCCTACGCCCAGCACCTGC
CCGAGGCACCCCCCCAGCAGACACCCCCCTCCATCCTCAAGGTGCGGAGG
GCTGTCAGGAAGTCTGTCAGTCCTCAGGCATCGGAGGCAAGGACCAGGCA
GGCTACAGGTTCCATCTCCGACTTCGCCATGCCCACCCCTCCGCGGTACC
AGAGGAGGACCATCTCGATCGCTGAGCCGCCCAAAGAGCAGAAGGAAACC
CCGAGGAAGATCCGCTTCGCCGCAGAAACTCCCGGCCTGCCGCCCTCTCC
TGATGTGTTTGACCCCCCGAGTTTCCCGGAGGAGAGAGTGGCAGAGAACG
AACCATTTGTAGGAACTCCTGTCACACCTCGGTGTGCGCCAAGAGTCAGG
GAGGCCAGTAAGGTGATCTACCCCAGTCTGGATGAGATGCTGGCGGAAGC
TCAGGAGGAGACACCTGTGAAAGCCCTCCTCACCTCACCTGGGCGACGCC
CTCGCACCTCACCTGTGGGACTGCTGGAGAGACTCAGAAGGCACACAGTA
AACCTGGGCGGAGACGCCCTGTCCCTGCTGTCCACCCCCCCAGTGAAGCG
TCGCCGCGCCTCCTACGCCCAGCACCTGCCCGAGGCACCCCCCCAGCAGA
CACCCCCCTCCATCCTCAAGGTGCGGAGGGCTGTCAGGAAGTCTGTCAGT
CCTCAGGCATCGGAGGCAAGGACCAGGCAGGCTACAGGTTCCATCTCCGA
CTTCGCCATGCCCACCCCTCCGCGGTACCAGAGGAGGACCATCTCGATCG
CTGAGCCGCCCAAAGAGCAGAAGGAAACCCCGAGGAAGATCCGCTTCGCC
GCAGAAACTCCCGGCCTGCCGCCCTCTCCTGATGTGTTTGACCCCCCGAG
TTTCCCGGAGGAGAGAGTGGCAGAGAACGAACCATTTGTAGGAACTCCTG
TCACACCTCGGTGTGCGCCAAGAGTCAGGGAGGCCAGTAAGGTGATCTAC
CCCAGTCTGGATGAGATGCTGGCGGAAGCTCAGGAGGAGACACCTGTGAA
AGCCCTCCTCACCTCACCTGGGCGACGCCCTCGCACCTCACCTGTGGGAC
TGCTGGAGAGACTCAGAAGGCACACAGTAAACCTGGGCGGAGACGCCCTG
TCCCTGCTGTCCACCCCCCCAGTGAAGCGTCGCCGCGCCTCCTACGCCCA
GCACCTGCCCGAGGCACCCCCCCAGCAGACACCCCCCTCCATCCTCAAGG
TGCGGAGGGCTGTCAGGAAGTCTGTCAGTCCTCAGGCATCGGAGGCAAGG
ACCAGGCAGGCTACAGGTTCCATCTCCGACTTCGCCATGCCCACCCCTCC
GCGGTACCAGAGGAGGACCATCTCGATCGCTGAGCCGCCCAAAGAGCAGA
AGGAAACCCCGAGGAAGATCCGCTTCGCCGCAGAAACTCCCGGCCTGCCG
CCCTCTCCTGATGTGTTTGACCCCCCGAGTTTCCCGGAGGAGAGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97449gene:BL97449Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97449_cuf0transcript:BL97449_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97449_cuf0-E1BL97449_cuf0-E1-1564476830-100178Branchiostoma lanceolatumexon
BL97449_cuf0-E2BL97449_cuf0-E2-1564476830-100176Branchiostoma lanceolatumexon
BL97449_cuf0-E3BL97449_cuf0-E3-1564476830-100174Branchiostoma lanceolatumexon
BL97449_cuf0-E4BL97449_cuf0-E4-1564476830-100172Branchiostoma lanceolatumexon
BL97449_cuf0-E5BL97449_cuf0-E5-1564476830-100170Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:5417162..5420229 -
Properties
Property NameValue
Transcript idBL97449_cuf0
Biotypeprotein_coding