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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97443_cuf1 >transcript:BL97443_cuf1-protein ID=transcript:BL97443_cuf1-protein|Name=transcript:BL97443_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=455bp
MNKSQLFLLLVLNSCVLIGYYIWHLNGTTRNLSGVRKQIVSSSTKSARQC
QTTGELGYGRVHRWLASTNRQSQRPGETCTSPRTTFVFIKVHKAGGTTAL
SIMHRLAVVRNLSAVIPRMSVVLGHPFQLRLEDYHALNEGGKFDVLGEHS
VYNRDVMDSIMKEDVVYLAVLRRPVSQLASTFHHYGIERKYRMKKARGSV
SNNPVENFLLNPWRRMPQPYRDGRNTPYSKYRNWQATEMGFPLGLSDNKV
AIHDWVQSTGREFFFVIILEHFDESMVMLRRLMCWEVKDIIYLRPSLSRS
YKYKAKPPSEQALRNHRNFSAVDYALHEYWNASLWRRISRQAPDFHEEVA
AYKQINSDAASYCEIASKEGAPPKIFPQTKWSAQFEIDPLFCKLLNLFTV
EIRRVLFYTMFAQGRLQNFQKESEKLNRHTVTWQDIVQHNFQKIASKRAK
KKHKG Run BLAST on NCBI mRNA from alignment at Sc0000010:867411..871056+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97443_cuf1 ID=transcript:BL97443_cuf1|Name=transcript:BL97443_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3646bp|location=Sequence derived from alignment at Sc0000010:867411..871056+ (Branchiostoma lanceolatum)
GTCACATGTCGGTTGAGATGACGTGTAAACACAAACACACACGGCCATAA
CTTCGTAGAGAATTCAAGGTAATGTTTCCGTCTGCTTTTGTGAAATTTCA
CGTGCGCAGGTATTTCTTAATCAACGTTAGAGCTGACATGTCTTGACAGA
CTCTCAACCCATAGCTTTACTTTTAAATTTCATGTTTAAAGTCAAATGTA
TCGTGTCGTCCTTTACTGTAGACTGATGCTACACATGAACAAGGGTGGCA
CTGCGATTAAAAAGAACCACGTTGTTTCGCTACACTGATCGTGTATATCA
AGTAAATTTCAAGTCAACCTAATCGGGTAGTGATTTCGTCCTAGCGTAGT
AATAGACTACAAGTGGTTACTGTTGACGATATTACTTTCGAAGCCGCGGT
GATAGTTGTCGTTGTCTCTAAAACTACAAGAAAGGTTGTTGCTATAACCC
TGGATCTTCGAGTATTAATCGAGTCGCACTTTGACTGTAAATACTTATTA
ATCACTACCTGATTTTTCACTTTGTTTTCCACTTTTTTTTTGTAGATTGA
CGATGAACAAGAGCCAGTTGTTTCTACTCCTTGTCTTAAACAGCTGCGTT
CTGATTGGTTACTACATCTGGCACCTCAATGGCACCACTCGCAACTTGTC
TGGTGTTCGGAAACAAATTGTTTCGTCATCAACAAAGAGTGCACGACAGT
GTCAGACCACAGGAGAACTGGGCTATGGACGTGTGCACAGATGGTTTGTA
GTCCATGATTTTATTTTTGCAACATTTGCGTCACTTTTAAATGCTGCTAT
ACACGTACGAACCAAAATGTGGTCACGTGTACCGTATAGGCTTGGGGCAT
CTTTGCATCGTTTGCAATCACCTATGATCACTTTTGAGTAGGCATGGTGT
CAAAATTACATGGTAGAACACATTGACTTCATTACGTAAAAGCCAAACAG
CGAAGGTTCAAAATTTGAACGACGATACCTGAATAGAAAAAAAAAAGACT
TCAAACTCATTACTGTTTCTTTTGGAGACCTACCAACGACACGGGTTACA
TAATAACTATGTGTATCTATAAGTACAATGACCATAACCAAGTTATAGCT
TTTAAACAAACTATGTGTATCTATAAGTACTCTGACAAAGCTATTCCTTT
TAAGCCTTGCGGAAGTGTTTCTAATTTGATAGAGATGTTGTTGTTTTGTT
TGTTCCAGGCTCGCCAGTACAAACCGACAGTCCCAGAGACCTGGCGAGAC
TTGTACGTCACCGCGTACCACGTTTGTTTTTATCAAGGTACACAAGGCCG
GAGGTACCACTGCGCTCTCCATCATGCACAGGCTGGCCGTGGTACGTGGA
GTGATTTTCACTTGATGATTCTGAAACTGATCGTACAGTGTTACTAAAAG
CTTTTCAAATGATTTAATTTCTTTAATTTCCTTTTACAAGGATCGTCGTA
TCACCCTGTAACTCACCTCTCCTCTACAGCTCTTTCGCTTCCTCTCTTCC
GTTTTCACCTACTTTTCTAGTCTTTTAATTCGCCATCTAGCTCTCGGCAC
AGCGTCCTCTTCGAGTAGAGATTTTTATTTGTTCATCAATGATATTGTCT
CTGCAAAAATTGAGGTTTTGTCACGGATGTGTCTGTGTGTGTGTGTGTCT
CTCTCTCTGTGCGTGTGTATGTGTGTCTGTTTGTGTTTCTGTTTGTTGTC
CTGGACATGCTATGATCTTGATTTTTTGGTGGCAGATAGATTTTGATGTA
AGGAATAAGTGGAATAGGTTTGAGATTGTTATCATACGTTTGAAACAAGT
TAGTTTCCATGTCTCTTCCCCATGCATCATCATTGTTACTAAGGGCAGGC
AAGGAGGTCAAATAAACCTCCTTGGGGCAGAAGAAGTTTTCGTTCTTTGC
TCGTTCTCATTTAAATGTACACATTTTGTAACTTGCGTTACCGTTTGAAG
TAAGACGTTCCTGACATTCAGATATGCCACATATAAGGTGCCAAACTGTC
GTTCTGAAAAGGCAGAAAAGTTTTAAGTCGTCATAAAAACGACAGTTTGG
CACCTTATATGTGGCAAATCTTAATGTCAGGAACGTCTTACTTCAAACGG
TAACGGAAGTTACAAAATGTGTACATTTAAATGAGAACGAGCGTCTTGTC
TTCATCCATGCACAGGTACGGAACCTGAGCGCAGTGATACCCCGCATGTC
CGTGGTGCTCGGGCACCCCTTCCAGCTTCGTCTCGAAGATTACCACGCCC
TGAACGAAGGAGGGAAGTTCGACGTCTTGGGAGAACACTCCGTCTACAAC
CGTGACGTCATGGACAGCATCATGAAAGAAGATGTCGTGTACCTGGCCGT
CTTGCGCCGACCGGTGTCGCAGTTGGCGTCGACGTTCCACCATTACGGCA
TCGAGAGGAAATATCGGATGAAGAAAGCTCGAGGTTCTGTTTCGAACAAT
CCCGTGGAGAATTTTCTCTTGAACCCCTGGCGACGGATGCCTCAACCGTA
TCGCGACGGAAGAAACACGCCTTACTCTAAGTACAGAAACTGGCAGGCGA
CTGAGATGGGTTTCCCCCTTGGGTTATCAGATAACAAGGTCGCCATTCAC
GACTGGGTTCAGAGCACGGGGCGCGAGTTCTTTTTCGTCATCATCCTCGA
ACATTTCGACGAATCCATGGTGATGTTACGAAGGCTTATGTGCTGGGAGG
TCAAGGATATCATATATCTGCGACCTTCATTGTCACGGTCATATAAATAC
AAGGCAAAACCGCCCTCAGAGCAGGCACTCCGTAACCATAGAAACTTCAG
CGCCGTGGACTACGCCCTACACGAGTACTGGAACGCGTCGCTGTGGAGAA
GAATATCGCGGCAAGCCCCAGACTTCCACGAAGAAGTCGCTGCTTACAAA
CAGATCAATTCCGACGCAGCCAGCTACTGCGAGATCGCATCCAAAGAGGG
CGCCCCGCCCAAGATTTTTCCTCAAACAAAATGGTCTGCGCAGTTTGAGA
TCGACCCACTGTTCTGTAAACTCCTGAATCTATTCACAGTGGAGATTAGA
AGAGTGCTGTTTTACACTATGTTTGCCCAGGGAAGGCTGCAAAATTTCCA
AAAGGAAAGTGAAAAGCTGAATCGGCACACAGTCACGTGGCAGGACATAG
TGCAGCATAACTTTCAGAAAATTGCAAGTAAGAGGGCTAAGAAGAAACAT
AAAGGGTAGACAGATACTCCTACAAGGGTTGTATGATCACAAGGACCTTC
GTTCTTAACGAATGACGGAACAAGTCACCAAATGTAAAGCTACTTACACG
TAACAGGAGGAAACATAATGTTTAGATGTTGAAAATTTATCATCTTATCA
ATGTTCTGACACTGACCAGCGTGGGTAAACCGTACATAGGATGCTGTTGT
AGTCATCTCTTTTCAAAACTGAAGTATTCAGAAATTGAGTTTAGGAATTA
CTGTTGCCTCTAGTATATTTTCATCAACGCTATCACAGTTTTTTAAAGTT
TTTATTTATTTATTTTGCTTTTGGACAGACAAGGACGACGTGAAACAGCA
CCCAAGTTTTTCACAATTCTCGTGATTTTAACAGGGCCACTTACAGAGAG
CAATTTGTAGTGACAAATCTTAGCTTTGGAAAATAAAGTAGATTTC Coding sequence (CDS) from alignment at Sc0000010:867411..871056+ >transcript:BL97443_cuf1 ID=transcript:BL97443_cuf1|Name=transcript:BL97443_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4104bp|location=Sequence derived from alignment at Sc0000010:867411..871056+ (Branchiostoma lanceolatum)
ATGAACAAGAGCCAGTTGTTTCTACTCCTTGTCTTAAACAGCTGCGTTCT
GATTGGTTACTACATCTGGCACCTCAATGGCACCACTCGCAACTTGTCTG
GTGTTCGGAAACAAATTGTTTCGTCATCAACAAAGAGTGCACGACAGTGT
CAGACCACAGGAGAACTGGGCTATGGACGTGTGCACAGATGGCTCGCCAG
TACAAACCGACAGTCCCAGAGACCTGGCGAGACTTGTACGTCACCGCGTA
CCACGTTTGTTTTTATCAAGGTACACAAGGCCGGAGGTACCACTGCGCTC
TCCATCATGCACAGGCTGGCCGTGGTACGGAACCTGAGCGCAGTGATACC
CCGCATGTCCGTGGTGCTCGGGCACCCCTTCCAGCTTCGTCTCGAAGATT
ACCACGCCCTGAACGAAGGAGGGAAGTTCGACGTCTTGGGAGAACACTCC
GTCTACAACCGTGACGTCATGGACAGCATCATGAAAGAAGATGTCGTGTA
CCTGGCCGTCTTGCGCCGACCGGTGTCGCAGTTGGCGTCGACGTTCCACC
ATTACGGCATCGAGAGGAAATATCGGATGAAGAAAGCTCGAGGTTCTGTT
TCGAACAATCCCGTGGAGAATTTTCTCTTGAACCCCTGGCGACGGATGCC
TCAACCGTATCGCGACGGAAGAAACACGCCTTACTCTAAGTACAGAAACT
GGCAGGCGACTGAGATGGGTTTCCCCCTTGGGTTATCAGATAACAAGGTC
GCCATTCACGACTGGGTTCAGAGCACGGGGCGCGAGTTCTTTTTCGTCAT
CATCCTCGAACATTTCGACGAATCCATGGTGATGTTACGAAGGCTTATGT
GCTGGGAGGTCAAGGATATCATATATCTGCGACCTTCATTGTCACGGTCA
TATAAATACAAGGCAAAACCGCCCTCAGAGCAGGCACTCCGTAACCATAG
AAACTTCAGCGCCGTGGACTACGCCCTACACGAGTACTGGAACGCGTCGC
TGTGGAGAAGAATATCGCGGCAAGCCCCAGACTTCCACGAAGAAGTCGCT
GCTTACAAACAGATCAATTCCGACGCAGCCAGCTACTGCGAGATCGCATC
CAAAGAGGGCGCCCCGCCCAAGATTTTTCCTCAAACAAAATGGTCTGCGC
AGTTTGAGATCGACCCACTGTTCTGTAAACTCCTGAATCTATTCACAGTG
GAGATTAGAAGAGTGCTGTTTTACACTATGTTTGCCCAGGGAAGGCTGCA
AAATTTCCAAAAGGAAAGTGAAAAGCTGAATCGGCACACAGTCACGTGGC
AGGACATAGTGCAGCATAACTTTCAGAAAATTGCAAGTAAGAGGGCTAAG
AAGAAACATAAAGGGTAGATGAACAAGAGCCAGTTGTTTCTACTCCTTGT
CTTAAACAGCTGCGTTCTGATTGGTTACTACATCTGGCACCTCAATGGCA
CCACTCGCAACTTGTCTGGTGTTCGGAAACAAATTGTTTCGTCATCAACA
AAGAGTGCACGACAGTGTCAGACCACAGGAGAACTGGGCTATGGACGTGT
GCACAGATGGCTCGCCAGTACAAACCGACAGTCCCAGAGACCTGGCGAGA
CTTGTACGTCACCGCGTACCACGTTTGTTTTTATCAAGGTACACAAGGCC
GGAGGTACCACTGCGCTCTCCATCATGCACAGGCTGGCCGTGGTACGGAA
CCTGAGCGCAGTGATACCCCGCATGTCCGTGGTGCTCGGGCACCCCTTCC
AGCTTCGTCTCGAAGATTACCACGCCCTGAACGAAGGAGGGAAGTTCGAC
GTCTTGGGAGAACACTCCGTCTACAACCGTGACGTCATGGACAGCATCAT
GAAAGAAGATGTCGTGTACCTGGCCGTCTTGCGCCGACCGGTGTCGCAGT
TGGCGTCGACGTTCCACCATTACGGCATCGAGAGGAAATATCGGATGAAG
AAAGCTCGAGGTTCTGTTTCGAACAATCCCGTGGAGAATTTTCTCTTGAA
CCCCTGGCGACGGATGCCTCAACCGTATCGCGACGGAAGAAACACGCCTT
ACTCTAAGTACAGAAACTGGCAGGCGACTGAGATGGGTTTCCCCCTTGGG
TTATCAGATAACAAGGTCGCCATTCACGACTGGGTTCAGAGCACGGGGCG
CGAGTTCTTTTTCGTCATCATCCTCGAACATTTCGACGAATCCATGGTGA
TGTTACGAAGGCTTATGTGCTGGGAGGTCAAGGATATCATATATCTGCGA
CCTTCATTGTCACGGTCATATAAATACAAGGCAAAACCGCCCTCAGAGCA
GGCACTCCGTAACCATAGAAACTTCAGCGCCGTGGACTACGCCCTACACG
AGTACTGGAACGCGTCGCTGTGGAGAAGAATATCGCGGCAAGCCCCAGAC
TTCCACGAAGAAGTCGCTGCTTACAAACAGATCAATTCCGACGCAGCCAG
CTACTGCGAGATCGCATCCAAAGAGGGCGCCCCGCCCAAGATTTTTCCTC
AAACAAAATGGTCTGCGCAGTTTGAGATCGACCCACTGTTCTGTAAACTC
CTGAATCTATTCACAGTGGAGATTAGAAGAGTGCTGTTTTACACTATGTT
TGCCCAGGGAAGGCTGCAAAATTTCCAAAAGGAAAGTGAAAAGCTGAATC
GGCACACAGTCACGTGGCAGGACATAGTGCAGCATAACTTTCAGAAAATT
GCAAGTAAGAGGGCTAAGAAGAAACATAAAGGGTAGATGAACAAGAGCCA
GTTGTTTCTACTCCTTGTCTTAAACAGCTGCGTTCTGATTGGTTACTACA
TCTGGCACCTCAATGGCACCACTCGCAACTTGTCTGGTGTTCGGAAACAA
ATTGTTTCGTCATCAACAAAGAGTGCACGACAGTGTCAGACCACAGGAGA
ACTGGGCTATGGACGTGTGCACAGATGGCTCGCCAGTACAAACCGACAGT
CCCAGAGACCTGGCGAGACTTGTACGTCACCGCGTACCACGTTTGTTTTT
ATCAAGGTACACAAGGCCGGAGGTACCACTGCGCTCTCCATCATGCACAG
GCTGGCCGTGGTACGGAACCTGAGCGCAGTGATACCCCGCATGTCCGTGG
TGCTCGGGCACCCCTTCCAGCTTCGTCTCGAAGATTACCACGCCCTGAAC
GAAGGAGGGAAGTTCGACGTCTTGGGAGAACACTCCGTCTACAACCGTGA
CGTCATGGACAGCATCATGAAAGAAGATGTCGTGTACCTGGCCGTCTTGC
GCCGACCGGTGTCGCAGTTGGCGTCGACGTTCCACCATTACGGCATCGAG
AGGAAATATCGGATGAAGAAAGCTCGAGGTTCTGTTTCGAACAATCCCGT
GGAGAATTTTCTCTTGAACCCCTGGCGACGGATGCCTCAACCGTATCGCG
ACGGAAGAAACACGCCTTACTCTAAGTACAGAAACTGGCAGGCGACTGAG
ATGGGTTTCCCCCTTGGGTTATCAGATAACAAGGTCGCCATTCACGACTG
GGTTCAGAGCACGGGGCGCGAGTTCTTTTTCGTCATCATCCTCGAACATT
TCGACGAATCCATGGTGATGTTACGAAGGCTTATGTGCTGGGAGGTCAAG
GATATCATATATCTGCGACCTTCATTGTCACGGTCATATAAATACAAGGC
AAAACCGCCCTCAGAGCAGGCACTCCGTAACCATAGAAACTTCAGCGCCG
TGGACTACGCCCTACACGAGTACTGGAACGCGTCGCTGTGGAGAAGAATA
TCGCGGCAAGCCCCAGACTTCCACGAAGAAGTCGCTGCTTACAAACAGAT
CAATTCCGACGCAGCCAGCTACTGCGAGATCGCATCCAAAGAGGGCGCCC
CGCCCAAGATTTTTCCTCAAACAAAATGGTCTGCGCAGTTTGAGATCGAC
CCACTGTTCTGTAAACTCCTGAATCTATTCACAGTGGAGATTAGAAGAGT
GCTGTTTTACACTATGTTTGCCCAGGGAAGGCTGCAAAATTTCCAAAAGG
AAAGTGAAAAGCTGAATCGGCACACAGTCACGTGGCAGGACATAGTGCAG
CATAACTTTCAGAAAATTGCAAGTAAGAGGGCTAAGAAGAAACATAAAGG
GTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000010 | genome | Sc0000010:867411..871056 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97443_cuf1 |
| Biotype | protein_coding |
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