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transcript:BL97443_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97443_cuf1
Unique Nametranscript:BL97443_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97443_cuf1

>transcript:BL97443_cuf1-protein ID=transcript:BL97443_cuf1-protein|Name=transcript:BL97443_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=455bp
MNKSQLFLLLVLNSCVLIGYYIWHLNGTTRNLSGVRKQIVSSSTKSARQC
QTTGELGYGRVHRWLASTNRQSQRPGETCTSPRTTFVFIKVHKAGGTTAL
SIMHRLAVVRNLSAVIPRMSVVLGHPFQLRLEDYHALNEGGKFDVLGEHS
VYNRDVMDSIMKEDVVYLAVLRRPVSQLASTFHHYGIERKYRMKKARGSV
SNNPVENFLLNPWRRMPQPYRDGRNTPYSKYRNWQATEMGFPLGLSDNKV
AIHDWVQSTGREFFFVIILEHFDESMVMLRRLMCWEVKDIIYLRPSLSRS
YKYKAKPPSEQALRNHRNFSAVDYALHEYWNASLWRRISRQAPDFHEEVA
AYKQINSDAASYCEIASKEGAPPKIFPQTKWSAQFEIDPLFCKLLNLFTV
EIRRVLFYTMFAQGRLQNFQKESEKLNRHTVTWQDIVQHNFQKIASKRAK
KKHKG
Run BLAST on NCBI

mRNA from alignment at Sc0000010:867411..871056+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97443_cuf1 ID=transcript:BL97443_cuf1|Name=transcript:BL97443_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3646bp|location=Sequence derived from alignment at Sc0000010:867411..871056+ (Branchiostoma lanceolatum)
GTCACATGTCGGTTGAGATGACGTGTAAACACAAACACACACGGCCATAA CTTCGTAGAGAATTCAAGGTAATGTTTCCGTCTGCTTTTGTGAAATTTCA CGTGCGCAGGTATTTCTTAATCAACGTTAGAGCTGACATGTCTTGACAGA CTCTCAACCCATAGCTTTACTTTTAAATTTCATGTTTAAAGTCAAATGTA TCGTGTCGTCCTTTACTGTAGACTGATGCTACACATGAACAAGGGTGGCA CTGCGATTAAAAAGAACCACGTTGTTTCGCTACACTGATCGTGTATATCA AGTAAATTTCAAGTCAACCTAATCGGGTAGTGATTTCGTCCTAGCGTAGT AATAGACTACAAGTGGTTACTGTTGACGATATTACTTTCGAAGCCGCGGT GATAGTTGTCGTTGTCTCTAAAACTACAAGAAAGGTTGTTGCTATAACCC TGGATCTTCGAGTATTAATCGAGTCGCACTTTGACTGTAAATACTTATTA ATCACTACCTGATTTTTCACTTTGTTTTCCACTTTTTTTTTGTAGATTGA CGATGAACAAGAGCCAGTTGTTTCTACTCCTTGTCTTAAACAGCTGCGTT CTGATTGGTTACTACATCTGGCACCTCAATGGCACCACTCGCAACTTGTC TGGTGTTCGGAAACAAATTGTTTCGTCATCAACAAAGAGTGCACGACAGT GTCAGACCACAGGAGAACTGGGCTATGGACGTGTGCACAGATGGTTTGTA GTCCATGATTTTATTTTTGCAACATTTGCGTCACTTTTAAATGCTGCTAT ACACGTACGAACCAAAATGTGGTCACGTGTACCGTATAGGCTTGGGGCAT CTTTGCATCGTTTGCAATCACCTATGATCACTTTTGAGTAGGCATGGTGT CAAAATTACATGGTAGAACACATTGACTTCATTACGTAAAAGCCAAACAG CGAAGGTTCAAAATTTGAACGACGATACCTGAATAGAAAAAAAAAAGACT TCAAACTCATTACTGTTTCTTTTGGAGACCTACCAACGACACGGGTTACA TAATAACTATGTGTATCTATAAGTACAATGACCATAACCAAGTTATAGCT TTTAAACAAACTATGTGTATCTATAAGTACTCTGACAAAGCTATTCCTTT TAAGCCTTGCGGAAGTGTTTCTAATTTGATAGAGATGTTGTTGTTTTGTT TGTTCCAGGCTCGCCAGTACAAACCGACAGTCCCAGAGACCTGGCGAGAC TTGTACGTCACCGCGTACCACGTTTGTTTTTATCAAGGTACACAAGGCCG GAGGTACCACTGCGCTCTCCATCATGCACAGGCTGGCCGTGGTACGTGGA GTGATTTTCACTTGATGATTCTGAAACTGATCGTACAGTGTTACTAAAAG CTTTTCAAATGATTTAATTTCTTTAATTTCCTTTTACAAGGATCGTCGTA TCACCCTGTAACTCACCTCTCCTCTACAGCTCTTTCGCTTCCTCTCTTCC GTTTTCACCTACTTTTCTAGTCTTTTAATTCGCCATCTAGCTCTCGGCAC AGCGTCCTCTTCGAGTAGAGATTTTTATTTGTTCATCAATGATATTGTCT CTGCAAAAATTGAGGTTTTGTCACGGATGTGTCTGTGTGTGTGTGTGTCT CTCTCTCTGTGCGTGTGTATGTGTGTCTGTTTGTGTTTCTGTTTGTTGTC CTGGACATGCTATGATCTTGATTTTTTGGTGGCAGATAGATTTTGATGTA AGGAATAAGTGGAATAGGTTTGAGATTGTTATCATACGTTTGAAACAAGT TAGTTTCCATGTCTCTTCCCCATGCATCATCATTGTTACTAAGGGCAGGC AAGGAGGTCAAATAAACCTCCTTGGGGCAGAAGAAGTTTTCGTTCTTTGC TCGTTCTCATTTAAATGTACACATTTTGTAACTTGCGTTACCGTTTGAAG TAAGACGTTCCTGACATTCAGATATGCCACATATAAGGTGCCAAACTGTC GTTCTGAAAAGGCAGAAAAGTTTTAAGTCGTCATAAAAACGACAGTTTGG CACCTTATATGTGGCAAATCTTAATGTCAGGAACGTCTTACTTCAAACGG TAACGGAAGTTACAAAATGTGTACATTTAAATGAGAACGAGCGTCTTGTC TTCATCCATGCACAGGTACGGAACCTGAGCGCAGTGATACCCCGCATGTC CGTGGTGCTCGGGCACCCCTTCCAGCTTCGTCTCGAAGATTACCACGCCC TGAACGAAGGAGGGAAGTTCGACGTCTTGGGAGAACACTCCGTCTACAAC CGTGACGTCATGGACAGCATCATGAAAGAAGATGTCGTGTACCTGGCCGT CTTGCGCCGACCGGTGTCGCAGTTGGCGTCGACGTTCCACCATTACGGCA TCGAGAGGAAATATCGGATGAAGAAAGCTCGAGGTTCTGTTTCGAACAAT CCCGTGGAGAATTTTCTCTTGAACCCCTGGCGACGGATGCCTCAACCGTA TCGCGACGGAAGAAACACGCCTTACTCTAAGTACAGAAACTGGCAGGCGA CTGAGATGGGTTTCCCCCTTGGGTTATCAGATAACAAGGTCGCCATTCAC GACTGGGTTCAGAGCACGGGGCGCGAGTTCTTTTTCGTCATCATCCTCGA ACATTTCGACGAATCCATGGTGATGTTACGAAGGCTTATGTGCTGGGAGG TCAAGGATATCATATATCTGCGACCTTCATTGTCACGGTCATATAAATAC AAGGCAAAACCGCCCTCAGAGCAGGCACTCCGTAACCATAGAAACTTCAG CGCCGTGGACTACGCCCTACACGAGTACTGGAACGCGTCGCTGTGGAGAA GAATATCGCGGCAAGCCCCAGACTTCCACGAAGAAGTCGCTGCTTACAAA CAGATCAATTCCGACGCAGCCAGCTACTGCGAGATCGCATCCAAAGAGGG CGCCCCGCCCAAGATTTTTCCTCAAACAAAATGGTCTGCGCAGTTTGAGA TCGACCCACTGTTCTGTAAACTCCTGAATCTATTCACAGTGGAGATTAGA AGAGTGCTGTTTTACACTATGTTTGCCCAGGGAAGGCTGCAAAATTTCCA AAAGGAAAGTGAAAAGCTGAATCGGCACACAGTCACGTGGCAGGACATAG TGCAGCATAACTTTCAGAAAATTGCAAGTAAGAGGGCTAAGAAGAAACAT AAAGGGTAGACAGATACTCCTACAAGGGTTGTATGATCACAAGGACCTTC GTTCTTAACGAATGACGGAACAAGTCACCAAATGTAAAGCTACTTACACG TAACAGGAGGAAACATAATGTTTAGATGTTGAAAATTTATCATCTTATCA ATGTTCTGACACTGACCAGCGTGGGTAAACCGTACATAGGATGCTGTTGT AGTCATCTCTTTTCAAAACTGAAGTATTCAGAAATTGAGTTTAGGAATTA CTGTTGCCTCTAGTATATTTTCATCAACGCTATCACAGTTTTTTAAAGTT TTTATTTATTTATTTTGCTTTTGGACAGACAAGGACGACGTGAAACAGCA CCCAAGTTTTTCACAATTCTCGTGATTTTAACAGGGCCACTTACAGAGAG CAATTTGTAGTGACAAATCTTAGCTTTGGAAAATAAAGTAGATTTC

Coding sequence (CDS) from alignment at Sc0000010:867411..871056+

>transcript:BL97443_cuf1 ID=transcript:BL97443_cuf1|Name=transcript:BL97443_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4104bp|location=Sequence derived from alignment at Sc0000010:867411..871056+ (Branchiostoma lanceolatum)
ATGAACAAGAGCCAGTTGTTTCTACTCCTTGTCTTAAACAGCTGCGTTCT
GATTGGTTACTACATCTGGCACCTCAATGGCACCACTCGCAACTTGTCTG
GTGTTCGGAAACAAATTGTTTCGTCATCAACAAAGAGTGCACGACAGTGT
CAGACCACAGGAGAACTGGGCTATGGACGTGTGCACAGATGGCTCGCCAG
TACAAACCGACAGTCCCAGAGACCTGGCGAGACTTGTACGTCACCGCGTA
CCACGTTTGTTTTTATCAAGGTACACAAGGCCGGAGGTACCACTGCGCTC
TCCATCATGCACAGGCTGGCCGTGGTACGGAACCTGAGCGCAGTGATACC
CCGCATGTCCGTGGTGCTCGGGCACCCCTTCCAGCTTCGTCTCGAAGATT
ACCACGCCCTGAACGAAGGAGGGAAGTTCGACGTCTTGGGAGAACACTCC
GTCTACAACCGTGACGTCATGGACAGCATCATGAAAGAAGATGTCGTGTA
CCTGGCCGTCTTGCGCCGACCGGTGTCGCAGTTGGCGTCGACGTTCCACC
ATTACGGCATCGAGAGGAAATATCGGATGAAGAAAGCTCGAGGTTCTGTT
TCGAACAATCCCGTGGAGAATTTTCTCTTGAACCCCTGGCGACGGATGCC
TCAACCGTATCGCGACGGAAGAAACACGCCTTACTCTAAGTACAGAAACT
GGCAGGCGACTGAGATGGGTTTCCCCCTTGGGTTATCAGATAACAAGGTC
GCCATTCACGACTGGGTTCAGAGCACGGGGCGCGAGTTCTTTTTCGTCAT
CATCCTCGAACATTTCGACGAATCCATGGTGATGTTACGAAGGCTTATGT
GCTGGGAGGTCAAGGATATCATATATCTGCGACCTTCATTGTCACGGTCA
TATAAATACAAGGCAAAACCGCCCTCAGAGCAGGCACTCCGTAACCATAG
AAACTTCAGCGCCGTGGACTACGCCCTACACGAGTACTGGAACGCGTCGC
TGTGGAGAAGAATATCGCGGCAAGCCCCAGACTTCCACGAAGAAGTCGCT
GCTTACAAACAGATCAATTCCGACGCAGCCAGCTACTGCGAGATCGCATC
CAAAGAGGGCGCCCCGCCCAAGATTTTTCCTCAAACAAAATGGTCTGCGC
AGTTTGAGATCGACCCACTGTTCTGTAAACTCCTGAATCTATTCACAGTG
GAGATTAGAAGAGTGCTGTTTTACACTATGTTTGCCCAGGGAAGGCTGCA
AAATTTCCAAAAGGAAAGTGAAAAGCTGAATCGGCACACAGTCACGTGGC
AGGACATAGTGCAGCATAACTTTCAGAAAATTGCAAGTAAGAGGGCTAAG
AAGAAACATAAAGGGTAGATGAACAAGAGCCAGTTGTTTCTACTCCTTGT
CTTAAACAGCTGCGTTCTGATTGGTTACTACATCTGGCACCTCAATGGCA
CCACTCGCAACTTGTCTGGTGTTCGGAAACAAATTGTTTCGTCATCAACA
AAGAGTGCACGACAGTGTCAGACCACAGGAGAACTGGGCTATGGACGTGT
GCACAGATGGCTCGCCAGTACAAACCGACAGTCCCAGAGACCTGGCGAGA
CTTGTACGTCACCGCGTACCACGTTTGTTTTTATCAAGGTACACAAGGCC
GGAGGTACCACTGCGCTCTCCATCATGCACAGGCTGGCCGTGGTACGGAA
CCTGAGCGCAGTGATACCCCGCATGTCCGTGGTGCTCGGGCACCCCTTCC
AGCTTCGTCTCGAAGATTACCACGCCCTGAACGAAGGAGGGAAGTTCGAC
GTCTTGGGAGAACACTCCGTCTACAACCGTGACGTCATGGACAGCATCAT
GAAAGAAGATGTCGTGTACCTGGCCGTCTTGCGCCGACCGGTGTCGCAGT
TGGCGTCGACGTTCCACCATTACGGCATCGAGAGGAAATATCGGATGAAG
AAAGCTCGAGGTTCTGTTTCGAACAATCCCGTGGAGAATTTTCTCTTGAA
CCCCTGGCGACGGATGCCTCAACCGTATCGCGACGGAAGAAACACGCCTT
ACTCTAAGTACAGAAACTGGCAGGCGACTGAGATGGGTTTCCCCCTTGGG
TTATCAGATAACAAGGTCGCCATTCACGACTGGGTTCAGAGCACGGGGCG
CGAGTTCTTTTTCGTCATCATCCTCGAACATTTCGACGAATCCATGGTGA
TGTTACGAAGGCTTATGTGCTGGGAGGTCAAGGATATCATATATCTGCGA
CCTTCATTGTCACGGTCATATAAATACAAGGCAAAACCGCCCTCAGAGCA
GGCACTCCGTAACCATAGAAACTTCAGCGCCGTGGACTACGCCCTACACG
AGTACTGGAACGCGTCGCTGTGGAGAAGAATATCGCGGCAAGCCCCAGAC
TTCCACGAAGAAGTCGCTGCTTACAAACAGATCAATTCCGACGCAGCCAG
CTACTGCGAGATCGCATCCAAAGAGGGCGCCCCGCCCAAGATTTTTCCTC
AAACAAAATGGTCTGCGCAGTTTGAGATCGACCCACTGTTCTGTAAACTC
CTGAATCTATTCACAGTGGAGATTAGAAGAGTGCTGTTTTACACTATGTT
TGCCCAGGGAAGGCTGCAAAATTTCCAAAAGGAAAGTGAAAAGCTGAATC
GGCACACAGTCACGTGGCAGGACATAGTGCAGCATAACTTTCAGAAAATT
GCAAGTAAGAGGGCTAAGAAGAAACATAAAGGGTAGATGAACAAGAGCCA
GTTGTTTCTACTCCTTGTCTTAAACAGCTGCGTTCTGATTGGTTACTACA
TCTGGCACCTCAATGGCACCACTCGCAACTTGTCTGGTGTTCGGAAACAA
ATTGTTTCGTCATCAACAAAGAGTGCACGACAGTGTCAGACCACAGGAGA
ACTGGGCTATGGACGTGTGCACAGATGGCTCGCCAGTACAAACCGACAGT
CCCAGAGACCTGGCGAGACTTGTACGTCACCGCGTACCACGTTTGTTTTT
ATCAAGGTACACAAGGCCGGAGGTACCACTGCGCTCTCCATCATGCACAG
GCTGGCCGTGGTACGGAACCTGAGCGCAGTGATACCCCGCATGTCCGTGG
TGCTCGGGCACCCCTTCCAGCTTCGTCTCGAAGATTACCACGCCCTGAAC
GAAGGAGGGAAGTTCGACGTCTTGGGAGAACACTCCGTCTACAACCGTGA
CGTCATGGACAGCATCATGAAAGAAGATGTCGTGTACCTGGCCGTCTTGC
GCCGACCGGTGTCGCAGTTGGCGTCGACGTTCCACCATTACGGCATCGAG
AGGAAATATCGGATGAAGAAAGCTCGAGGTTCTGTTTCGAACAATCCCGT
GGAGAATTTTCTCTTGAACCCCTGGCGACGGATGCCTCAACCGTATCGCG
ACGGAAGAAACACGCCTTACTCTAAGTACAGAAACTGGCAGGCGACTGAG
ATGGGTTTCCCCCTTGGGTTATCAGATAACAAGGTCGCCATTCACGACTG
GGTTCAGAGCACGGGGCGCGAGTTCTTTTTCGTCATCATCCTCGAACATT
TCGACGAATCCATGGTGATGTTACGAAGGCTTATGTGCTGGGAGGTCAAG
GATATCATATATCTGCGACCTTCATTGTCACGGTCATATAAATACAAGGC
AAAACCGCCCTCAGAGCAGGCACTCCGTAACCATAGAAACTTCAGCGCCG
TGGACTACGCCCTACACGAGTACTGGAACGCGTCGCTGTGGAGAAGAATA
TCGCGGCAAGCCCCAGACTTCCACGAAGAAGTCGCTGCTTACAAACAGAT
CAATTCCGACGCAGCCAGCTACTGCGAGATCGCATCCAAAGAGGGCGCCC
CGCCCAAGATTTTTCCTCAAACAAAATGGTCTGCGCAGTTTGAGATCGAC
CCACTGTTCTGTAAACTCCTGAATCTATTCACAGTGGAGATTAGAAGAGT
GCTGTTTTACACTATGTTTGCCCAGGGAAGGCTGCAAAATTTCCAAAAGG
AAAGTGAAAAGCTGAATCGGCACACAGTCACGTGGCAGGACATAGTGCAG
CATAACTTTCAGAAAATTGCAAGTAAGAGGGCTAAGAAGAAACATAAAGG
GTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97443gene:BL97443Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97443_cuf1transcript:BL97443_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97443_cuf1-E1BL97443_cuf1-E1-1564476830-95126Branchiostoma lanceolatumexon
BL97443_cuf1-E2BL97443_cuf1-E2-1564476830-95129Branchiostoma lanceolatumexon
BL97443_cuf1-E3BL97443_cuf1-E3-1564476830-95131Branchiostoma lanceolatumexon
BL97443_cuf1-E4BL97443_cuf1-E4-1564476830-95134Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:867411..871056 +
Properties
Property NameValue
Transcript idBL97443_cuf1
Biotypeprotein_coding