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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97373_cuf1 >transcript:BL97373_cuf1-protein ID=transcript:BL97373_cuf1-protein|Name=transcript:BL97373_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=237bp
FMQSSGDAGVVIVTFGSMVATMPAERADMLAAAFARLPQKVVWRYAGTPP
PSLGSNTKTMKWLPQSDLLAHPKTKAFVSHCGYNGITEAMHHGVPLIGMP
LFGDQHDNIVRVVARGMAVSLDIHSVTSEDVYQAITTVITDPRYKEKAKF
ISTIRQDQPQSPMERAIWWIEHVIKHGGLPHLRSRATELPFYQYYLLDVL
ALIVAVITVILLSCWKCCLFACGMCKRSRTDIKHKTS Run BLAST on NCBI mRNA from alignment at Sc0000030:1185880..1188622+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97373_cuf1 ID=transcript:BL97373_cuf1|Name=transcript:BL97373_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2743bp|location=Sequence derived from alignment at Sc0000030:1185880..1188622+ (Branchiostoma lanceolatum)
GTTCATGCAGAGCTCTGGAGATGCCGGGGTCGTGATTGTAACGTTCGGCT
CCATGGTAGCGACTATGCCTGCAGAGAGAGCCGACATGCTGGCCGCTGCT
TTTGCCCGTCTGCCGCAGAAGGTCGTGTGGCGCTACGCTGGGACGCCACC
TCCAAGTCTGGGGTCCAACACCAAGACCATGAAGTGGTTACCTCAAAGCG
ACTTACTAGGTAAATGTCTGTAGAGTCCATTATATTGCCATGTCAGAGTT
TGTTTATGCAGTTATAGTCTAGTGGATGATGAAAGCATTTTGTATAAAAC
CACATTGATCCAATGTTGTCACACATTCAAGCTTTAATTTTTATNTGATT
ACAGTCATACAATATGGTTCTTTGTGATGTGTTGCAGACACCCGCGCCAA
TGGTGTCCCCACCCCTCTTGCCTACGTACCAACAGTGTCCTCAAGGCTGT
CTGATCGAATGACCTTTTTCCAGAGAGTCAAGAATGTTTTAGCTTCTGTT
GGGTTGAATGCTATAGGACGTCTAGTCTTCGAGAGAACTTACGACGGTAT
GGCAAGGAGGTACGTGGATGAATAATTGCTCGTCTTGTTTTATACATGAA
GGAGATGTCTCGTCTCTGTAGTCAGTGTAAAACAAAGGTTGACATGACTT
TTTGTGCACAAACAGAACCATTGGGGGCAACTACACCATGTCGGCTGCCT
TGGCAAGAACCGACGTGTGGCTCTACCAATCAGACGTCATGTTCGACTTC
CCTAGACCCACCATGCCAAATATGGTCAGCATAGCGGGTCACATGGCTGA
TAAGGTCAAGCCACTCAGTGAGGTTAGTCAATGATTGAAATTAGAAGCAA
CATAACATTAACGTCGACCAGCTTTGTGACCTTTTTCGCTGAAATCATAT
TTGATTGTGTTCTAATTGAAACAATAAACTTTATTGTCTTATTCTGTCAG
AAATGACCTTCAAGGATGGTCCTAACTCTTGTATTCTACTGAATTAATAG
GAGCTGGAAAAGTTCATGCAGAGCTCTGGAGATGCCGGGGTCGTGATTGT
AACGTTCGGCTCCATGGTAGCGACTATGCCTGCAGAGAGAGCCGACATGC
TGGCCGCTGCTTTTGCCCGTCTGCCGCAGAAGGTCGTGTGGCGCTACGCT
GGGACGCCACCTCCAAGTCTGGGGTCCAACACCAAGACCATGAAGTGGTT
ACCTCAAAGCGACTTACTAGGTAAATGTCTGTAGAGTCCATTATATTGCC
ATGTCAGAGTTTGTTTATGCAGTTATAGTCTAGTGGATGATGAAAGCATT
TTGTATAAAACCACATTGATCCAATGTTGTCACACATTCAAGCTTTAATT
TTTATCCCTTCAGCTCATCCCAAGACAAAGGCGTTTGTATCACACTGTGG
CTACAACGGTATAACAGAGGCCATGCACCACGGGGTGCCCCTGATCGGCA
TGCCTCTGTTCGGTGACCAACACGACAACATCGTCCGAGTGGTGGCCCGA
GGGATGGCAGTGTCACTGGACATCCACAGCGTGACGTCAGAAGACGTTTA
TCAGGCCATCACTACCGTTATTACAGACCCAAGGTAAGTGCAGGAAGCCT
AGGTAGAGTTAGAAGACTTTAAAGATGATATGAAAACGAACAGATTCTTG
GCGTCTTCACTGATTTGCGATCTGAGCAAGTTTTGTCCACCCTGTTTGAT
GGCGGACCTCGACAAGTTAAGTCCACGGAGCGTTGTACATGTCCTGTGTT
GGATATCAAATGTGCATCAACGGCTCTCACCTCTTTCAATGAACTAAAGC
GATCAGTTACCTGAAACAATCTACATCACATTATCGTTCTTAAAAACCAT
TTACACATATGATTCACAACAGCCCTGCGCTGGTATAGTTTGTGCGAATG
GGCTGACTTAAGAATGTATTTCAGGTACAAGGAAAAGGCCAAATTCATCT
CCACCATCCGCCAAGACCAACCACAGTCACCCATGGAGCGGGCAATATGG
TGGATAGAACACGTCATCAAACATGGCGGCCTCCCTCATCTCAGGTCAAG
GGCAACCGAACTGCCATTCTACCAGTACTACCTGTTAGACGTCCTGGCTC
TGATTGTGGCAGTTATAACTGTTATATTGTTGAGCTGTTGGAAGTGCTGT
TTGTTTGCTTGCGGCATGTGCAAAAGGAGTAGAACCGACATCAAACATAA
AACTTCCTAACTCTTCATGTGCGCCAAATATGTCACAGAGAAAAAGAAGT
GAATATGTAGATGTTTTGGGAAAGTGTCAACGTAGATGCACTTTACCTTT
TATTTCAATGTAATATGTACGATTGGAGTTGTAGAAATCTTTATGTAAAT
TCGCAGAAGTGGTGGTGACTATCACTAACTAATGGACAGTGCAGAACATC
AAAATAGTTAGCATGTGAAATTGAACAAAATAGGAAGAATAACACTTGAG
TTATTGCAACGTAATATTTCGCAAGGGAAGAGGCATGTTGTCGACTTCGC
ACGTAGAAAGTAATGAAAATACGAAATCCTTTGGAAATAATTGCATTCAA
TAAAGACACCAGGATGACATTACGAGTACTAGTAACATTCGTCACATATG
TCGTTTCAACATGATTTGTCTGTCTTCATATACATGTACATGTATATTAT
ATTGATCTATGTGTATGAGCTGTAGCGCAAGTTCGTATGAATAGTTGAAA
CAAAGACACTGTCCTTCAGGTAAACGTTGTTAAATGAAAGCTG Coding sequence (CDS) from alignment at Sc0000030:1185880..1188622+ >transcript:BL97373_cuf1 ID=transcript:BL97373_cuf1|Name=transcript:BL97373_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2142bp|location=Sequence derived from alignment at Sc0000030:1185880..1188622+ (Branchiostoma lanceolatum)
TTCATGCAGAGCTCTGGAGATGCCGGGGTCGTGATTGTAACGTTCGGCTC
CATGGTAGCGACTATGCCTGCAGAGAGAGCCGACATGCTGGCCGCTGCTT
TTGCCCGTCTGCCGCAGAAGGTCGTGTGGCGCTACGCTGGGACGCCACCT
CCAAGTCTGGGGTCCAACACCAAGACCATGAAGTGGTTACCTCAAAGCGA
CTTACTAGCTCATCCCAAGACAAAGGCGTTTGTATCACACTGTGGCTACA
ACGGTATAACAGAGGCCATGCACCACGGGGTGCCCCTGATCGGCATGCCT
CTGTTCGGTGACCAACACGACAACATCGTCCGAGTGGTGGCCCGAGGGAT
GGCAGTGTCACTGGACATCCACAGCGTGACGTCAGAAGACGTTTATCAGG
CCATCACTACCGTTATTACAGACCCAAGGTACAAGGAAAAGGCCAAATTC
ATCTCCACCATCCGCCAAGACCAACCACAGTCACCCATGGAGCGGGCAAT
ATGGTGGATAGAACACGTCATCAAACATGGCGGCCTCCCTCATCTCAGGT
CAAGGGCAACCGAACTGCCATTCTACCAGTACTACCTGTTAGACGTCCTG
GCTCTGATTGTGGCAGTTATAACTGTTATATTGTTGAGCTGTTGGAAGTG
CTGTTTGTTTGCTTGCGGCATGTGCAAAAGGAGTAGAACCGACATCAAAC
ATAAAACTTCCTAATTCATGCAGAGCTCTGGAGATGCCGGGGTCGTGATT
GTAACGTTCGGCTCCATGGTAGCGACTATGCCTGCAGAGAGAGCCGACAT
GCTGGCCGCTGCTTTTGCCCGTCTGCCGCAGAAGGTCGTGTGGCGCTACG
CTGGGACGCCACCTCCAAGTCTGGGGTCCAACACCAAGACCATGAAGTGG
TTACCTCAAAGCGACTTACTAGCTCATCCCAAGACAAAGGCGTTTGTATC
ACACTGTGGCTACAACGGTATAACAGAGGCCATGCACCACGGGGTGCCCC
TGATCGGCATGCCTCTGTTCGGTGACCAACACGACAACATCGTCCGAGTG
GTGGCCCGAGGGATGGCAGTGTCACTGGACATCCACAGCGTGACGTCAGA
AGACGTTTATCAGGCCATCACTACCGTTATTACAGACCCAAGGTACAAGG
AAAAGGCCAAATTCATCTCCACCATCCGCCAAGACCAACCACAGTCACCC
ATGGAGCGGGCAATATGGTGGATAGAACACGTCATCAAACATGGCGGCCT
CCCTCATCTCAGGTCAAGGGCAACCGAACTGCCATTCTACCAGTACTACC
TGTTAGACGTCCTGGCTCTGATTGTGGCAGTTATAACTGTTATATTGTTG
AGCTGTTGGAAGTGCTGTTTGTTTGCTTGCGGCATGTGCAAAAGGAGTAG
AACCGACATCAAACATAAAACTTCCTAATTCATGCAGAGCTCTGGAGATG
CCGGGGTCGTGATTGTAACGTTCGGCTCCATGGTAGCGACTATGCCTGCA
GAGAGAGCCGACATGCTGGCCGCTGCTTTTGCCCGTCTGCCGCAGAAGGT
CGTGTGGCGCTACGCTGGGACGCCACCTCCAAGTCTGGGGTCCAACACCA
AGACCATGAAGTGGTTACCTCAAAGCGACTTACTAGCTCATCCCAAGACA
AAGGCGTTTGTATCACACTGTGGCTACAACGGTATAACAGAGGCCATGCA
CCACGGGGTGCCCCTGATCGGCATGCCTCTGTTCGGTGACCAACACGACA
ACATCGTCCGAGTGGTGGCCCGAGGGATGGCAGTGTCACTGGACATCCAC
AGCGTGACGTCAGAAGACGTTTATCAGGCCATCACTACCGTTATTACAGA
CCCAAGGTACAAGGAAAAGGCCAAATTCATCTCCACCATCCGCCAAGACC
AACCACAGTCACCCATGGAGCGGGCAATATGGTGGATAGAACACGTCATC
AAACATGGCGGCCTCCCTCATCTCAGGTCAAGGGCAACCGAACTGCCATT
CTACCAGTACTACCTGTTAGACGTCCTGGCTCTGATTGTGGCAGTTATAA
CTGTTATATTGTTGAGCTGTTGGAAGTGCTGTTTGTTTGCTTGCGGCATG
TGCAAAAGGAGTAGAACCGACATCAAACATAAAACTTCCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000030 | genome | Sc0000030:1185880..1188622 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97373_cuf1 |
| Biotype | protein_coding |
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