transcript:BL97362_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97362_cuf3
Unique Nametranscript:BL97362_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97362_cuf3

>transcript:BL97362_cuf3-protein ID=transcript:BL97362_cuf3-protein|Name=transcript:BL97362_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=227bp
SITGNLFTFMDEATLLTRNTYSAYVALFDNYVASTGTNEVVTSAETAEIN
AFINAIQGTDVIIKLHEFLAYKGLASSNLATFMADLREMWFGLYSRSSGA
AMDSSGFEHVFLGEFKSGRVSGFHNWITMYLLERDGQADYHGYIWDKQPG
ILAAQLKWGSLYKDLGSMFYGTSPEFDLAMYTMCYVTSPDSLCRFNMAGV
SVAIQTWSWANSSYDGGKRYLASAYAA
Run BLAST on NCBI

mRNA from alignment at Sc0000108:319679..321768+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97362_cuf3 ID=transcript:BL97362_cuf3|Name=transcript:BL97362_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2090bp|location=Sequence derived from alignment at Sc0000108:319679..321768+ (Branchiostoma lanceolatum)
TATCAATCACTGGGAAGTACGGATATTGCAGAACTTAGGTAGTGTTGAAT
TCTAATTATGATGAATCACACGATGGACGTTAAGTATGTGGTAAAATGTG
AATGCGTTTTTGAATCAACAGCTTTATCTTTTACAGCCTTTTCACGTTCA
TGGACGAAGCTACACTACTTACCAGGAACACGNGAATCACACGATGAACG
TTAAGTATGTGGTAAAATGTGAATGCGTTTCTGAATCAACAGCTTTATCT
TTTACAGCCTTTTCACGTTCATGGACGAAGCTACACTACTTACCAGGAAC
ACGTACAGCGCATACGTAGCGCTCTTCGACAACTACGTGGCCTCAACGGG
AACGAATGAAGTGGTGACGTCAGCAGAGACAGCTGAGATCAATGCCTTCA
TCAACGCCATCCAAGGCACTGACGTCATCATCAAGCTGCACGAGTTCCTG
GCATACAAAGGTAAGTTCACCATACAACTGTTACGTTACTGATACTGTTG
TGTTGTGCACACAGAAAAAGAGCAGATCAAGCAAAAGCAAACTACATTTT
GAGTAACTTTGACTTCTTTTAATGGTGCGAACTCAGAAAAAAGCAGCAAC
AAGAACCAGAGCACGGATAGCTCATGTTAGTAAGATGACAAGCATCGAGT
TGAATAAGAAGCATTTGGTTTTTCAACAGGTCTGGCAAGTTCCAACTTGG
CCACGTTCATGGCCGACCTGAGGGAGATGTGGTTCGGGCTGTACTCGCGG
TCCAGCGGAGCCGCCATGGATTCTAGTGGCTTCGAACACGTGTTTCTGGG
CGAGTTTAAAAGCGGCAGGGTCAGTCAGAGATTTAGATTACATAGTTCAG
ACACTGCTGAGTAACCAACTGTTTAGTCAACCAACTACCACATTTTTTTG
CGGTCCCCAAGAGGCATTCATACCCCCAAACAGCAACCAAAATCGACTGG
AAGCGGCACCCTTCCCAGCAGCGGCCATTTCAAATTGAGGATTTCTGCTG
GTGCCGACATCGTCGGCCATTGACTTTATTCTAATATCAGGATGAGAAAC
AACATCTTTATACAGTAATTTTCATTACGATAACACCACGGTAACGGTAA
ATGCGTTTGAACACATTCGAATGTGAAAATGTACCTTTTTTGCATCCAGC
CAACCAACCCATTTCTCTCGAGCAGCCACTCCTTCTATGCAACCACATTT
CAATCATTGAGCGGCTGCTAAGACCAGGTTTGACTGTACATTGAGAAACA
GACTATTCTTGCCGTGCGTATATATGAAGCTTGACAATGTTCAGCCACTT
TCTCCTGATGAAACAAAACATTTCTCTCCAGGTCTCGGGATTCCACAACT
GGATCACCATGTACCTGTTAGAGAGAGACGGACAGGCCGACTATCATGGC
TATATTTGGGACAAGCAGGTAAAGTTTTCCATGATTTTATTTATATGCCT
ACCCTAGCCTGGGTATCGTTTCTATCCGTGTCGATTTGTCCACTCTCTTG
GCCATTCCACAATAAAAGTGGAGCGAGCAAGACTCGTACTATCTACACTC
TTGATTCATTTGCATTTATAGAATCTCCACTGCAATATGATTTTGACTAT
CTGAATTGCAACGTAACAAGAGACGTATAGGACTAGCTGGCGATTACTGG
TGTCGCGCACCACATATTCTGTTCATCTACTGCTATATTAGTTGTCTCTG
GTAATAGTTACCACATTAAAAGAAAGTATCGAACATTTGAGTGTAATTGA
ACTCGACAAAATATTTTCCCCTCCAGCCTGGCATCCTGGCCGCCCAACTG
AAGTGGGGCTCCCTGTACAAGGACCTGGGGTCCATGTTCTACGGCACCAG
TCCGGAGTTTGACCTGGCCATGTACACCATGTGCTACGTCACCTCTCCAG
ACAGCCTTTGCCGTTTCAACATGGCGGGCGTGTCCGTGGCCATCCAGACC
TGGAGCTGGGCTAACTCCAGCTATGACGGCGGGAAGCGTTACCTTGCGTC
CGCCTATGCCGCCTGAGTGTTCTGAGCAGTCTCCAACTAACGTATCTGCA
TTACCAGCGAACCAGTTCTGGATAAGCATTTTTGATTAAG

Coding sequence (CDS) from alignment at Sc0000108:319679..321768+

>transcript:BL97362_cuf3 ID=transcript:BL97362_cuf3|Name=transcript:BL97362_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3420bp|location=Sequence derived from alignment at Sc0000108:319679..321768+ (Branchiostoma lanceolatum)
TCAATCACTGGGAACCTTTTCACGTTCATGGACGAAGCTACACTACTTAC
CAGGAACACGTACAGCGCATACGTAGCGCTCTTCGACAACTACGTGGCCT
CAACGGGAACGAATGAAGTGGTGACGTCAGCAGAGACAGCTGAGATCAAT
GCCTTCATCAACGCCATCCAAGGCACTGACGTCATCATCAAGCTGCACGA
GTTCCTGGCATACAAAGGTCTGGCAAGTTCCAACTTGGCCACGTTCATGG
CCGACCTGAGGGAGATGTGGTTCGGGCTGTACTCGCGGTCCAGCGGAGCC
GCCATGGATTCTAGTGGCTTCGAACACGTGTTTCTGGGCGAGTTTAAAAG
CGGCAGGGTCTCGGGATTCCACAACTGGATCACCATGTACCTGTTAGAGA
GAGACGGACAGGCCGACTATCATGGCTATATTTGGGACAAGCAGCCTGGC
ATCCTGGCCGCCCAACTGAAGTGGGGCTCCCTGTACAAGGACCTGGGGTC
CATGTTCTACGGCACCAGTCCGGAGTTTGACCTGGCCATGTACACCATGT
GCTACGTCACCTCTCCAGACAGCCTTTGCCGTTTCAACATGGCGGGCGTG
TCCGTGGCCATCCAGACCTGGAGCTGGGCTAACTCCAGCTATGACGGCGG
GAAGCGTTACCTTGCGTCCGCCTATGCCGCCTGATCAATCACTGGGAACC
TTTTCACGTTCATGGACGAAGCTACACTACTTACCAGGAACACGTACAGC
GCATACGTAGCGCTCTTCGACAACTACGTGGCCTCAACGGGAACGAATGA
AGTGGTGACGTCAGCAGAGACAGCTGAGATCAATGCCTTCATCAACGCCA
TCCAAGGCACTGACGTCATCATCAAGCTGCACGAGTTCCTGGCATACAAA
GGTCTGGCAAGTTCCAACTTGGCCACGTTCATGGCCGACCTGAGGGAGAT
GTGGTTCGGGCTGTACTCGCGGTCCAGCGGAGCCGCCATGGATTCTAGTG
GCTTCGAACACGTGTTTCTGGGCGAGTTTAAAAGCGGCAGGGTCTCGGGA
TTCCACAACTGGATCACCATGTACCTGTTAGAGAGAGACGGACAGGCCGA
CTATCATGGCTATATTTGGGACAAGCAGCCTGGCATCCTGGCCGCCCAAC
TGAAGTGGGGCTCCCTGTACAAGGACCTGGGGTCCATGTTCTACGGCACC
AGTCCGGAGTTTGACCTGGCCATGTACACCATGTGCTACGTCACCTCTCC
AGACAGCCTTTGCCGTTTCAACATGGCGGGCGTGTCCGTGGCCATCCAGA
CCTGGAGCTGGGCTAACTCCAGCTATGACGGCGGGAAGCGTTACCTTGCG
TCCGCCTATGCCGCCTGATCAATCACTGGGAACCTTTTCACGTTCATGGA
CGAAGCTACACTACTTACCAGGAACACGTACAGCGCATACGTAGCGCTCT
TCGACAACTACGTGGCCTCAACGGGAACGAATGAAGTGGTGACGTCAGCA
GAGACAGCTGAGATCAATGCCTTCATCAACGCCATCCAAGGCACTGACGT
CATCATCAAGCTGCACGAGTTCCTGGCATACAAAGGTCTGGCAAGTTCCA
ACTTGGCCACGTTCATGGCCGACCTGAGGGAGATGTGGTTCGGGCTGTAC
TCGCGGTCCAGCGGAGCCGCCATGGATTCTAGTGGCTTCGAACACGTGTT
TCTGGGCGAGTTTAAAAGCGGCAGGGTCTCGGGATTCCACAACTGGATCA
CCATGTACCTGTTAGAGAGAGACGGACAGGCCGACTATCATGGCTATATT
TGGGACAAGCAGCCTGGCATCCTGGCCGCCCAACTGAAGTGGGGCTCCCT
GTACAAGGACCTGGGGTCCATGTTCTACGGCACCAGTCCGGAGTTTGACC
TGGCCATGTACACCATGTGCTACGTCACCTCTCCAGACAGCCTTTGCCGT
TTCAACATGGCGGGCGTGTCCGTGGCCATCCAGACCTGGAGCTGGGCTAA
CTCCAGCTATGACGGCGGGAAGCGTTACCTTGCGTCCGCCTATGCCGCCT
GATCAATCACTGGGAACCTTTTCACGTTCATGGACGAAGCTACACTACTT
ACCAGGAACACGTACAGCGCATACGTAGCGCTCTTCGACAACTACGTGGC
CTCAACGGGAACGAATGAAGTGGTGACGTCAGCAGAGACAGCTGAGATCA
ATGCCTTCATCAACGCCATCCAAGGCACTGACGTCATCATCAAGCTGCAC
GAGTTCCTGGCATACAAAGGTCTGGCAAGTTCCAACTTGGCCACGTTCAT
GGCCGACCTGAGGGAGATGTGGTTCGGGCTGTACTCGCGGTCCAGCGGAG
CCGCCATGGATTCTAGTGGCTTCGAACACGTGTTTCTGGGCGAGTTTAAA
AGCGGCAGGGTCTCGGGATTCCACAACTGGATCACCATGTACCTGTTAGA
GAGAGACGGACAGGCCGACTATCATGGCTATATTTGGGACAAGCAGCCTG
GCATCCTGGCCGCCCAACTGAAGTGGGGCTCCCTGTACAAGGACCTGGGG
TCCATGTTCTACGGCACCAGTCCGGAGTTTGACCTGGCCATGTACACCAT
GTGCTACGTCACCTCTCCAGACAGCCTTTGCCGTTTCAACATGGCGGGCG
TGTCCGTGGCCATCCAGACCTGGAGCTGGGCTAACTCCAGCTATGACGGC
GGGAAGCGTTACCTTGCGTCCGCCTATGCCGCCTGATCAATCACTGGGAA
CCTTTTCACGTTCATGGACGAAGCTACACTACTTACCAGGAACACGTACA
GCGCATACGTAGCGCTCTTCGACAACTACGTGGCCTCAACGGGAACGAAT
GAAGTGGTGACGTCAGCAGAGACAGCTGAGATCAATGCCTTCATCAACGC
CATCCAAGGCACTGACGTCATCATCAAGCTGCACGAGTTCCTGGCATACA
AAGGTCTGGCAAGTTCCAACTTGGCCACGTTCATGGCCGACCTGAGGGAG
ATGTGGTTCGGGCTGTACTCGCGGTCCAGCGGAGCCGCCATGGATTCTAG
TGGCTTCGAACACGTGTTTCTGGGCGAGTTTAAAAGCGGCAGGGTCTCGG
GATTCCACAACTGGATCACCATGTACCTGTTAGAGAGAGACGGACAGGCC
GACTATCATGGCTATATTTGGGACAAGCAGCCTGGCATCCTGGCCGCCCA
ACTGAAGTGGGGCTCCCTGTACAAGGACCTGGGGTCCATGTTCTACGGCA
CCAGTCCGGAGTTTGACCTGGCCATGTACACCATGTGCTACGTCACCTCT
CCAGACAGCCTTTGCCGTTTCAACATGGCGGGCGTGTCCGTGGCCATCCA
GACCTGGAGCTGGGCTAACTCCAGCTATGACGGCGGGAAGCGTTACCTTG
CGTCCGCCTATGCCGCCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97362gene:BL97362Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97362_cuf3transcript:BL97362_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97362_cuf3-E1BL97362_cuf3-E1-1564476830-310061Branchiostoma lanceolatumexon
BL97362_cuf3-E2BL97362_cuf3-E2-1564476830-310063Branchiostoma lanceolatumexon
BL97362_cuf3-E3BL97362_cuf3-E3-1564476830-310065Branchiostoma lanceolatumexon
BL97362_cuf3-E4BL97362_cuf3-E4-1564476830-310067Branchiostoma lanceolatumexon
BL97362_cuf3-E5BL97362_cuf3-E5-1564476830-310070Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000108genomeSc0000108:319679..321768 +
Properties
Property NameValue
Transcript idBL97362_cuf3
Biotypeprotein_coding