transcript:BL97347_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97347_cuf3
Unique Nametranscript:BL97347_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97347_cuf3

>transcript:BL97347_cuf3-protein ID=transcript:BL97347_cuf3-protein|Name=transcript:BL97347_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=142bp
MKARNTCRLFWYAVVYCYLLLRSASAQSQPGLADPTESVLYCPSPVHLDN
DRGTFSTPLYPQKYPSDENCVWEISVDSSRVVQLKFHTFDLESDDLCGFD
RVTVYEGTGALHHKIGTFCGSDVPPLLNSPGNSMTVSFRSDS
Run BLAST on NCBI

mRNA from alignment at Sc0000056:1716063..1719830-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97347_cuf3 ID=transcript:BL97347_cuf3|Name=transcript:BL97347_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3768bp|location=Sequence derived from alignment at Sc0000056:1716063..1719830- (Branchiostoma lanceolatum)
GGATGATCAGTGCTAGGACAGTGTTCTCCAGTTCGGACGCCCGACAAGAC
ATTGTATTTTCTCGAGTCGAAAGCGTCGCATCGCTGAAGACATGATATTC
AGTATAACATACGCCGCATTCTCTTCTGTATTTGACAAGATGATGAAGAA
TGGGACATCTTTCTTACGTTAGAAGAGGACCGTTTCTCACACGCAAGGAT
AGGTAAGGTGTGATTATACATACAGTAGTTGTTGCTGTTGTGTGTGGTTA
TTTTTTCTTCTGTTGAGTTTTCATTCATGCTCATGAAGTGAGCCAGCGCA
TTGCTGGCTGTGATATGATCTGGCTCACCTCATATCACTACAATAATAGA
TAAAGATCTAACGTTGGGTAACATAAATTCGCGGGGTACTTAAATTCGGG
ATTTTTCGAAAACGGGGTATTTAGGGATATGTGCTAGATGCAACATCAGT
AATACCGCCAGAAATGCAAACTTGACAGACTAACGTATTCAGAACACTGT
CTGAAAAGCTTCGATAACCATGCATTAGAAGTTGGCTACGTCAAAAACTC
TCCGTCCCTTATTGTCACAGTCTGAGGGCTTCGTGGGAGAATTATACTGC
ATAGTTGTTCACTGGTTTATAAGACAAATGTCACATCCGCTTCCTGCTCA
ACACAATTATTTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGATATTCAGTATAACATACGCCGCATTCTCTTC
TGTATTTGACAAGATGATGAAGAATGGGACATCTTTCTTACGTTAGAAGA
GGACCGTTTCTCACACGCAAGGATAGGTAAGGTGTGATTATACATACAGT
AGTTGTTGTTGTTGGTGTGGTTATTGTTTCTTCTGTTGAGTTTTCATTCA
CGCTTATGAAGTGAGCCAGCGCATTGCTGACTGTGATATGATCTTGCTCA
CCTCATATCACTACAATAATAGATAAAGATCTATATCTTAAGCTGGATAA
AGCATGTTCGTCCCGTGTTTCATATTATATCGACTTATTGTAAAATTTCG
GGAGCTTAGAATGGCGTATACGTATCTTCGACCATTGCTTGCCTTTCAGT
ATATGTTTTTGTATTGCCGGTCAAGTTACAATGTACTTGTCGACTGGTCA
CCGTCCCAGCTACCGTATCAAGTTTGTTTTTATATGGACCTATGATTATG
ATTGACATCTTCAGAACTACATAGCCCTTGCGGATAAGTGTTTCGCTAGT
ACAAAACTATCAGATGCTTTCCGATGACCATGCCATTCCAAAGTGTGAGT
TTACCCGCATACGAAACCACCGAATGCACATGGAACACCCTATGGCAATA
TGTTTACAAGAGCTTGTAGCCAAAATTCAGAACACACTGAATGATACAAC
TAAGCTCACGGTTTCTTTGTTTCAGCTGTGTAAGAGAACGAGAATCGGAA
AATAAATGTCAAGATGCACTCAATAATCTTTACTCAATATCAGACAGTAT
CTCGGCATTGGTAGACATTGTGACCTGAAAAACAAGCTTTAAGAAGATAG
GAAATCAAATAGACCAAATGTACAAAATCTGATTTGGTACCACACCACTT
ATGGTTAATAGCTACCCCAGCAGGATAAGGGCATTTAATACAATAAAGAC
CATCGATATCGTGTCTAATCAGCTAATAAAGGCTGTTTGTCTTACTTGTT
CTATAGTCCAAGCAAGGATATAATGTCCTTGGTCCAAGCAATGGAATTAT
CCCACAACCTATTGCTTTCTAGATTCTTTCATGTCACCTTCAACTGAAGT
CAGCCCTCCTGCTGGAATAGGACAAAGAAACACTGATTTTGTATGTTTAT
TTGTTTAATATTTGTATCCTAACTGAAAAAAAAAGCATTTGAAAACAAAA
GCTTTCCATAGCTCAACACCTTAAGACCAGCTCGGGTGGAAATGTTTCAT
TGTATTTACACGGGGTCGTCTGATATTTTACAGTGTCCTGTGGAACTGCG
ACAATGAAGGCCCGAAACACCTGCAGATTATTTTGGTATGCCGTTGTCTA
CTGCTATCTTCTTCTCCGAAGCGCTTCAGCACAATCACAGCCAGGTAAGA
CCTTACATGGAGATTTGTATGTATACGTATCTTTTGCTACAGACCGAATG
TGGCACGGCACAAAGCACAACCAACACTGATGGGGTTGCGTATTCCTGAC
TTGTCCAATCTCCGTTTATTCGTTACCTCTTGAATGCCCAAACGAATACA
TGTACACCTTGCAGGATTGGCAGATCCTACTGAATCCGTGCTCTACTGCC
CATCTCCTGTTCATCTCGACAACGACAGGGGAACGTTTAGCACTCCCCTG
TACCCGCAGAAGTATCCGTCTGACGAAAACTGTGTGTGGGAGATATCCGT
GGACAGCTCCAGAGTTGTACAGTTGAAGTTTCACACGTTTGACCTGGAGA
GCGATGACCTGTGTGGGTTCGACCGTGTCACGGTGTACGAGGGAACCGGA
GCTTTACATCATAAGATAGGTGAGAGTCCAAGTGCAACGTACAAGCGGCA
GAAACGCAAACTGAACAATATATGGTATTGTAATTTCACCGGGCAGTGTT
GGATACACTCCTGATGATAGACCAGGAATCACACGTTATTTTCTATAGAA
CCCAAGAGAGAGACTAAGTACTCCAATTCCCTGCAGGTACATTTTGCGGA
AGTGACGTTCCGCCGCTACTGAACTCACCCGGGAACTCCATGACTGTTTC
TTTCCGGTCTGACAGTAT

Coding sequence (CDS) from alignment at Sc0000056:1716063..1719830-

>transcript:BL97347_cuf3 ID=transcript:BL97347_cuf3|Name=transcript:BL97347_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1278bp|location=Sequence derived from alignment at Sc0000056:1716063..1719830- (Branchiostoma lanceolatum)
ATGAAGGCCCGAAACACCTGCAGATTATTTTGGTATGCCGTTGTCTACTG
CTATCTTCTTCTCCGAAGCGCTTCAGCACAATCACAGCCAGGATTGGCAG
ATCCTACTGAATCCGTGCTCTACTGCCCATCTCCTGTTCATCTCGACAAC
GACAGGGGAACGTTTAGCACTCCCCTGTACCCGCAGAAGTATCCGTCTGA
CGAAAACTGTGTGTGGGAGATATCCGTGGACAGCTCCAGAGTTGTACAGT
TGAAGTTTCACACGTTTGACCTGGAGAGCGATGACCTGTGTGGGTTCGAC
CGTGTCACGGTGTACGAGGGAACCGGAGCTTTACATCATAAGATAGGTAC
ATTTTGCGGAAGTGACGTTCCGCCGCTACTGAACTCACCCGGGAACTCCA
TGACTGTTTCTTTCCGGTCTGACAGTATGAAGGCCCGAAACACCTGCAGA
TTATTTTGGTATGCCGTTGTCTACTGCTATCTTCTTCTCCGAAGCGCTTC
AGCACAATCACAGCCAGGATTGGCAGATCCTACTGAATCCGTGCTCTACT
GCCCATCTCCTGTTCATCTCGACAACGACAGGGGAACGTTTAGCACTCCC
CTGTACCCGCAGAAGTATCCGTCTGACGAAAACTGTGTGTGGGAGATATC
CGTGGACAGCTCCAGAGTTGTACAGTTGAAGTTTCACACGTTTGACCTGG
AGAGCGATGACCTGTGTGGGTTCGACCGTGTCACGGTGTACGAGGGAACC
GGAGCTTTACATCATAAGATAGGTACATTTTGCGGAAGTGACGTTCCGCC
GCTACTGAACTCACCCGGGAACTCCATGACTGTTTCTTTCCGGTCTGACA
GTATGAAGGCCCGAAACACCTGCAGATTATTTTGGTATGCCGTTGTCTAC
TGCTATCTTCTTCTCCGAAGCGCTTCAGCACAATCACAGCCAGGATTGGC
AGATCCTACTGAATCCGTGCTCTACTGCCCATCTCCTGTTCATCTCGACA
ACGACAGGGGAACGTTTAGCACTCCCCTGTACCCGCAGAAGTATCCGTCT
GACGAAAACTGTGTGTGGGAGATATCCGTGGACAGCTCCAGAGTTGTACA
GTTGAAGTTTCACACGTTTGACCTGGAGAGCGATGACCTGTGTGGGTTCG
ACCGTGTCACGGTGTACGAGGGAACCGGAGCTTTACATCATAAGATAGGT
ACATTTTGCGGAAGTGACGTTCCGCCGCTACTGAACTCACCCGGGAACTC
CATGACTGTTTCTTTCCGGTCTGACAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97347gene:BL97347Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97347_cuf3transcript:BL97347_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97347_cuf3-E1BL97347_cuf3-E1-1564476830-238850Branchiostoma lanceolatumexon
BL97347_cuf3-E2BL97347_cuf3-E2-1564476830-238848Branchiostoma lanceolatumexon
BL97347_cuf3-E3BL97347_cuf3-E3-1564476830-238845Branchiostoma lanceolatumexon
BL97347_cuf3-E4BL97347_cuf3-E4-1564476830-238843Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000056genomeSc0000056:1716063..1719830 -
Properties
Property NameValue
Transcript idBL97347_cuf3
Biotypeprotein_coding