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transcript:BL97339_cuf14 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97339_cuf14
Unique Nametranscript:BL97339_cuf14
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97339_cuf14

>transcript:BL97339_cuf14-protein ID=transcript:BL97339_cuf14-protein|Name=transcript:BL97339_cuf14|organism=Branchiostoma lanceolatum|type=polypeptide|length=174bp
MSQQPPSGRARGRARGRARGAIEEPPRRPGAGVAPPTAPPPVATVPPTDA
PAPVASGRGRQRGGVTSRPPGAPPTSQMEALSLGEKGAGAAPASQPFGGR
RRRGDVVIEEPHTRPAHIQDKKGSTGHPVPLVTNFFRVSSTPSWALYQYN
VSFAPEIDYRGVRFSMVKEHLELI
Run BLAST on NCBI

mRNA from alignment at Sc0000015:1557377..1559430+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97339_cuf14 ID=transcript:BL97339_cuf14|Name=transcript:BL97339_cuf14|organism=Branchiostoma lanceolatum|type=mRNA|length=2054bp|location=Sequence derived from alignment at Sc0000015:1557377..1559430+ (Branchiostoma lanceolatum)
AGCCTAGAGCGCTGATACTGTAAACAGTTGGCAGGTAAAACCAGGTACCA AAGATGTCACAGCAGCCACCTTCAGGACGTGCACGTGGCCGTGCCCGCGG TCGTGCCCGGGGAGCGATAGAAGAGCCGCCACGTCGCCCGGGTGCAGGGG TAGCCCCACCGACAGCCCCGCCTCCCGTAGCCACTGTCCCGCCGACCGAC GCGCCGGCCCCCGTAGCGAGCGGCCGTGGTCGTCAGAGAGGAGGGGTGAC ATCCAGGCCACCGGGAGGTCAGTAAATCGTTTGTTGTCTGCTTTTGTCTC CATTATTTTTTCACTTAGACAAGGATGTTGTTGCTGGCGTATGTCCTCTC TCTCCCTCCCTCTCTCTCTCTCCCTAGGCCTCTATCTTTGTGTGTGTTCT TTCTCTCCCTCTCTCTCTCGCTCTCTGTCCCCTCTCTTTCTCTCTGTCCT CTCTGTGTCTGTGTGTTTGTGTGCTTGCGTCTCTGTGTGTGTGCCTGTGT GTGTGTTGCTGGGGAGGGGGGGGAGAGACTGACATCCATGGCACTGGGAT GTCATTTTGTCATTTTTAGCTAGTTCAACTTCAGGCCTCCTCCCTAAGAA GGGACTTAGTTGTAGACTTCTGTGTGTGTGTATGTGTGTTCTAAGTTTTC TGACCAACAATATTATTATTAAAGCAAATTTACCCTCAATTTGTTTCAAG TAGCATTTGAATTAATTGTTATTCCTCCAAGGATTTTTGTGCAATGGCAA GACGTCAGAGCAAGATGTAGAGCCACCTTCAAGGCATCATGTGTTTTGAA GTTTTTTGTGGACAGAACTGGGATGTTTGAGACAGTTTAAGGCCAGGAGT AATTCTAGATGTCCAATTTCACACCAGGACTTCCAGACTGAAAGTGATGT ATGATGTGAGGGCGGCAGGGTTCAGTACTCAGAGACTTGTTTTGACTTCA TGAAGAAGGGAACCAAGTGTTCCCAATGTCACTGTAGACAGATCTGGGAA CTCTGAGACTGGTTCAAGCACCTGTTTTAACTAGCTGTGTAACGGTCTGT GGTGCTGAAAACACTGCAGGGTGGTAAGATTCCACTGTAGAAGTCTTGTA CTTGCCCACTTTTCATAGATAAAAAGAAAGTCAACTTATGAAAGTCTTCT AAGTGTACTACACTATGATTAAGTATCAAAAGAGAATTTATGCTATGCAT CTAACAACAATTCATTCGTCAAAATTTAGTTTATAAGTTTGCGTTTATTT TGATCTATGCTTACTCAAAGTACAAGACGACTATAATTGATGCAATGTTG TATTCCCCAGCTCCCCCCACGTCCCAGATGGAGGCCTTGTCCCTGGGTGA GAAGGGTGCAGGAGCTGCGCCAGCCTCACAGCCGTTCGGAGGGAGACGCA GGAGGGGCGATGTCGTCATCGAGGAGCCACACACCCGCCCTGCTCACATT CAGGACAAGAAAGGTGCGTATCTTAGGTAGAGCTGTGTTATGCCTGTGTA CCTAAACAAATTTTAGGTTCATGTGCAGGGTTTAGGATCAGGTCTGGGCT TTTAGGTAGTCCTTCTTGTACCTGAACTATTTGTTCAGATGATCGGTGAT TTTCAACAAGAACAAAAGCATGTTTGAACTGATAACAACATAATGCTTAA TTGTGCTATAACCACCACTACTGAGATATGAGGTTTTGTATGCATGGAAA CAAAAATTAAATTTGGCTAAGGCACTGCAAATGTGTTGTTCTATGCTGCA GGATAGTATAGATATGGCTTCAGTGTACTGCCACAGCATTTTAAAGAAAT TTTATCCGTCAAAGCTGCCATCCCTTGATGAATTTTCACTTACAGTGTGC TACAGGGTTATTAAGTTATGATGTCATTTGCCATCTTACCCCCCACAGGC TCCACGGGCCATCCGGTTCCCCTGGTAACCAACTTCTTCCGCGTGAGTTC CACCCCGTCCTGGGCGCTGTACCAGTACAACGTCAGCTTCGCGCCGGAGA TAGACTACCGAGGCGTCCGCTTCTCCATGGTGAAGGAACACCTGGAGCTG ATCG

Coding sequence (CDS) from alignment at Sc0000015:1557377..1559430+

>transcript:BL97339_cuf14 ID=transcript:BL97339_cuf14|Name=transcript:BL97339_cuf14|organism=Branchiostoma lanceolatum|type=CDS|length=1566bp|location=Sequence derived from alignment at Sc0000015:1557377..1559430+ (Branchiostoma lanceolatum)
ATGTCACAGCAGCCACCTTCAGGACGTGCACGTGGCCGTGCCCGCGGTCG
TGCCCGGGGAGCGATAGAAGAGCCGCCACGTCGCCCGGGTGCAGGGGTAG
CCCCACCGACAGCCCCGCCTCCCGTAGCCACTGTCCCGCCGACCGACGCG
CCGGCCCCCGTAGCGAGCGGCCGTGGTCGTCAGAGAGGAGGGGTGACATC
CAGGCCACCGGGAGCTCCCCCCACGTCCCAGATGGAGGCCTTGTCCCTGG
GTGAGAAGGGTGCAGGAGCTGCGCCAGCCTCACAGCCGTTCGGAGGGAGA
CGCAGGAGGGGCGATGTCGTCATCGAGGAGCCACACACCCGCCCTGCTCA
CATTCAGGACAAGAAAGGCTCCACGGGCCATCCGGTTCCCCTGGTAACCA
ACTTCTTCCGCGTGAGTTCCACCCCGTCCTGGGCGCTGTACCAGTACAAC
GTCAGCTTCGCGCCGGAGATAGACTACCGAGGCGTCCGCTTCTCCATGGT
GAAGGAACACCTGGAGCTGATCATGTCACAGCAGCCACCTTCAGGACGTG
CACGTGGCCGTGCCCGCGGTCGTGCCCGGGGAGCGATAGAAGAGCCGCCA
CGTCGCCCGGGTGCAGGGGTAGCCCCACCGACAGCCCCGCCTCCCGTAGC
CACTGTCCCGCCGACCGACGCGCCGGCCCCCGTAGCGAGCGGCCGTGGTC
GTCAGAGAGGAGGGGTGACATCCAGGCCACCGGGAGCTCCCCCCACGTCC
CAGATGGAGGCCTTGTCCCTGGGTGAGAAGGGTGCAGGAGCTGCGCCAGC
CTCACAGCCGTTCGGAGGGAGACGCAGGAGGGGCGATGTCGTCATCGAGG
AGCCACACACCCGCCCTGCTCACATTCAGGACAAGAAAGGCTCCACGGGC
CATCCGGTTCCCCTGGTAACCAACTTCTTCCGCGTGAGTTCCACCCCGTC
CTGGGCGCTGTACCAGTACAACGTCAGCTTCGCGCCGGAGATAGACTACC
GAGGCGTCCGCTTCTCCATGGTGAAGGAACACCTGGAGCTGATCATGTCA
CAGCAGCCACCTTCAGGACGTGCACGTGGCCGTGCCCGCGGTCGTGCCCG
GGGAGCGATAGAAGAGCCGCCACGTCGCCCGGGTGCAGGGGTAGCCCCAC
CGACAGCCCCGCCTCCCGTAGCCACTGTCCCGCCGACCGACGCGCCGGCC
CCCGTAGCGAGCGGCCGTGGTCGTCAGAGAGGAGGGGTGACATCCAGGCC
ACCGGGAGCTCCCCCCACGTCCCAGATGGAGGCCTTGTCCCTGGGTGAGA
AGGGTGCAGGAGCTGCGCCAGCCTCACAGCCGTTCGGAGGGAGACGCAGG
AGGGGCGATGTCGTCATCGAGGAGCCACACACCCGCCCTGCTCACATTCA
GGACAAGAAAGGCTCCACGGGCCATCCGGTTCCCCTGGTAACCAACTTCT
TCCGCGTGAGTTCCACCCCGTCCTGGGCGCTGTACCAGTACAACGTCAGC
TTCGCGCCGGAGATAGACTACCGAGGCGTCCGCTTCTCCATGGTGAAGGA
ACACCTGGAGCTGATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97339gene:BL97339Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97339_cuf14transcript:BL97339_cuf14-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97339_cuf14-E1BL97339_cuf14-E1-1564476830-125142Branchiostoma lanceolatumexon
BL97339_cuf14-E2BL97339_cuf14-E2-1564476830-125144Branchiostoma lanceolatumexon
BL97339_cuf14-E3BL97339_cuf14-E3-1564476830-125147Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000015genomeSc0000015:1557377..1559430 +
Properties
Property NameValue
Transcript idBL97339_cuf14
Biotypeprotein_coding