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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97313_cuf0 >transcript:BL97313_cuf0-protein ID=transcript:BL97313_cuf0-protein|Name=transcript:BL97313_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=356bp
FILTIAIFHPFLIILHILAPNTKPGRVMKIPAIRGMCWFFSLLELLIILI VEAQMYRVSSEDIDRMVQKIPTSGLQLSWTQAFIFIWMSGLFVEEINKVW YRGLSPYFKSFWNLLDFMAVALYTSYVALRCLAILQWDGHDMSLDWAARA KWNSFQPTIVADAVFAMFTLDMFLRAMCFLRMSRNLGTLQISFGRMVMDI IKFVIFLALVDLAFACGFNQLYWFYGSVHNYLCEKYNQTNLKNIDCSKAH GYGTLSSTILTLFWAEFGMSDLSMLQLKPGPSPEEALQIQDWPVFTEVVG TAMFGLFQVVSVLVLLNLLIAIMSTSYQMTEDNKDQEWTYVSVSDTFSVM RGNLSL Run BLAST on NCBI mRNA from alignment at Sc0000129:533503..535965- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97313_cuf0 ID=transcript:BL97313_cuf0|Name=transcript:BL97313_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2463bp|location=Sequence derived from alignment at Sc0000129:533503..535965- (Branchiostoma lanceolatum) GTTCATCTTAACAATCGCCATATTTCACCCATTTCTGATTATTCTGCACA
TTTTGGCACCAAATACAAAGGTACGTAAGGTTCATGTCCTTTCATGCGCT
TGTCCATTGTTTTTATCTATAAGTACCATTAGTTTAATGGAGAAAATGTT
CTTGTCATTCTAGCCGGGGAGAGTCATGAAGATCCCAGCAATCCGTGGAA
TGTGCTGGTTCTTTTCCCTGTTGGAGCTGCTCATTATCCTGATTGTAGAG
GCGCAGATGTACCGGGTGAGCAGCGAGGATATAGACAGGATGGTGCAGAA
GATCCCGACCTCTGGCTTACAACTGTCCTGGACACAAGCTTTCATCTTCA
TATGGATGTCTGGTATGACTAGGGATCTAACTCTACGAAATATTCTGGGA
AAATGGACTAATTTATGGTAAAGGAAAGGACACAAATTAGCATGGAATTA
GAATTATTACAATTTCTGCCCATCCAAGTGGTCCTTTTTTATTCTTCAAT
TTCACAAGAAGATCATAACACTAGTTCTGAATGATACAAACGGTTAAGTG
GTCTGATACGGGAGGGTCAAAACTTAATCCCTTCCATTTTGTGCTAAAGG
AGACTTCAAGTGTACTCAGGTCAATTTGCCCACTTGTAGACTGTATTAAT
GACAGACGTCACTTGTGTGATTCACGGTTGTGCAAACCTGGCCACGCGTA
AAGAGTACTGTAATTATTGTTTCTTTCACTGTAACTTTAAGTTCACTGTT
TTCACTGTCACCTCTGTACCGTGAACTTATCATCACCGTGAAAAACCTAT
TTATGATTTCTCCACACATCCTTTCTTTAAATCACTTTCTACCACCGTGA
AGTTAAAGTTCAGTGAAAATGTAAATTTTTGTTACACAGTGAAATTTTGC
TACCGTGAACTTAAAGTATATGGGTGGCTCTGAATCATGTCTTACTCATC
TGGACGAAAAGCAATCAGACCAAAGAATCGTACCAGCACTGTACTAAGTA
GTGTCTACAAGAAATAATATACATGCAATATTCGCCATTATTTTAGGACT
CTTCGTTGAGGAAATCAACAAAGTTTGGTACCGAGGACTGTCTCCGTACT
TCAAAAGCTTCTGGAATCTGCTTGACTTCATGGCCGTTGCACTCTACACT
AGTTATGTCGCCTTGCGATGTCTGGCCATTTTGCAGGTGAGAAAGGTTTC
GGTAAATGCATTTTTCGTCTCTGGACACAGAGGCCGCCAGTTTACTCACA
TTACGCAACAGTCTTGTATTGATATTTCAAACCTATGTGAAGTGGTCATA
GAAGTAGTGCATGTGTTTCAAAATAACGGTTTCTTATCACAACAAATTGA
GGGACCCTTGTTGTTCTATCTAGTGGGATGGCCATGATATGTCCCTGGAC
TGGGCAGCCAGAGCTAAATGGAACAGTTTCCAGCCGACCATCGTGGCCGA
TGCCGTGTTCGCCATGTTTACACTAGATATGTTTCTACGCGCGATGTGCT
TTCTGCGCATGTCACGTAATCTGGGCACTCTCCAGATCTCCTTCGGCCGG
ATGGTCATGGACATCATCAAGTTCGTCATTTTCCTCGCGCTCGTGGATCT
CGCGTTTGCCTGTGGTTTCAACCAACTCTACTGGTTCTATGGGTCTGTGC
ACAACTACCTCTGCGAAAAGTATAATCAGACCAACTTGAAGAACATTGAC
TGCTCTAAAGCTCATGGTTACGGCACGTGAGTATTGTCCCTCTATGGTGT
ACTGTTTTTTTTCACGACCATACGTATACACGTGGTATACCGCTGCCTCG
ATATTTGTACAATGCTATCCCAAAGACACGGTACTTAACGTTTCTGACGG
TCATGCTCTTGTCACGCAGCCTCTCCAGTACGATTCTGACTCTGTTCTGG
GCGGAGTTCGGCATGAGTGATCTCTCCATGCTGCAGCTGAAACCCGGCCC
CAGCCCGGAGGAGGCGCTGCAGATCCAGGACTGGCCAGTCTTTACCGAGG
TGGTGGGGACGGCCATGTTTGGGCTGTTTCAAGTGGTGTCAGTACTTGTA
CTTCTCAACCTGCTGATAGCCATCATGAGCACGTCCTACCAGATGACTGA
GGTGCTGGTTTTACTGTCATTTGTATCCCAAGGGACTGGCGTGTGTGTGT
GTCTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGCGTGTTTGTGTGTGT
GTGTGTTTGCGCGTGTGTGTGTTTGTTTGATTGTTTGTTTGTTTGTTTGT
TTGTTTGTTTGTTTGTTTGCAAAGTACAAGGATGTCTTCATTCATGTCAC
TAGCTTTCTTGACCTGCTACTATCATGTGTATATGGTGTATATGAGTCAA
TGCTCTCTGCTTTTTGTTGCTAAATCATATCCACAGGACAACAAAGACCA
GGAGTGGACGTACGTCTCTGTAAGTGACACATTTTCCGTCATGAGAGGAA
ATTTGTCGCTTCC Coding sequence (CDS) from alignment at Sc0000129:533503..535965- >transcript:BL97313_cuf0 ID=transcript:BL97313_cuf0|Name=transcript:BL97313_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=6408bp|location=Sequence derived from alignment at Sc0000129:533503..535965- (Branchiostoma lanceolatum) TTCATCTTAACAATCGCCATATTTCACCCATTTCTGATTATTCTGCACAT TTTGGCACCAAATACAAAGCCGGGGAGAGTCATGAAGATCCCAGCAATCC GTGGAATGTGCTGGTTCTTTTCCCTGTTGGAGCTGCTCATTATCCTGATT GTAGAGGCGCAGATGTACCGGGTGAGCAGCGAGGATATAGACAGGATGGT GCAGAAGATCCCGACCTCTGGCTTACAACTGTCCTGGACACAAGCTTTCA TCTTCATATGGATGTCTGGACTCTTCGTTGAGGAAATCAACAAAGTTTGG TACCGAGGACTGTCTCCGTACTTCAAAAGCTTCTGGAATCTGCTTGACTT CATGGCCGTTGCACTCTACACTAGTTATGTCGCCTTGCGATGTCTGGCCA TTTTGCAGTGGGATGGCCATGATATGTCCCTGGACTGGGCAGCCAGAGCT AAATGGAACAGTTTCCAGCCGACCATCGTGGCCGATGCCGTGTTCGCCAT GTTTACACTAGATATGTTTCTACGCGCGATGTGCTTTCTGCGCATGTCAC GTAATCTGGGCACTCTCCAGATCTCCTTCGGCCGGATGGTCATGGACATC ATCAAGTTCGTCATTTTCCTCGCGCTCGTGGATCTCGCGTTTGCCTGTGG TTTCAACCAACTCTACTGGTTCTATGGGTCTGTGCACAACTACCTCTGCG AAAAGTATAATCAGACCAACTTGAAGAACATTGACTGCTCTAAAGCTCAT GGTTACGGCACCCTCTCCAGTACGATTCTGACTCTGTTCTGGGCGGAGTT CGGCATGAGTGATCTCTCCATGCTGCAGCTGAAACCCGGCCCCAGCCCGG AGGAGGCGCTGCAGATCCAGGACTGGCCAGTCTTTACCGAGGTGGTGGGG ACGGCCATGTTTGGGCTGTTTCAAGTGGTGTCAGTACTTGTACTTCTCAA CCTGCTGATAGCCATCATGAGCACGTCCTACCAGATGACTGAGGACAACA AAGACCAGGAGTGGACGTACGTCTCTGTAAGTGACACATTTTCCGTCATG AGAGGAAATTTGTCGCTTTTCATCTTAACAATCGCCATATTTCACCCATT TCTGATTATTCTGCACATTTTGGCACCAAATACAAAGCCGGGGAGAGTCA TGAAGATCCCAGCAATCCGTGGAATGTGCTGGTTCTTTTCCCTGTTGGAG CTGCTCATTATCCTGATTGTAGAGGCGCAGATGTACCGGGTGAGCAGCGA GGATATAGACAGGATGGTGCAGAAGATCCCGACCTCTGGCTTACAACTGT CCTGGACACAAGCTTTCATCTTCATATGGATGTCTGGACTCTTCGTTGAG GAAATCAACAAAGTTTGGTACCGAGGACTGTCTCCGTACTTCAAAAGCTT CTGGAATCTGCTTGACTTCATGGCCGTTGCACTCTACACTAGTTATGTCG CCTTGCGATGTCTGGCCATTTTGCAGTGGGATGGCCATGATATGTCCCTG GACTGGGCAGCCAGAGCTAAATGGAACAGTTTCCAGCCGACCATCGTGGC CGATGCCGTGTTCGCCATGTTTACACTAGATATGTTTCTACGCGCGATGT GCTTTCTGCGCATGTCACGTAATCTGGGCACTCTCCAGATCTCCTTCGGC CGGATGGTCATGGACATCATCAAGTTCGTCATTTTCCTCGCGCTCGTGGA TCTCGCGTTTGCCTGTGGTTTCAACCAACTCTACTGGTTCTATGGGTCTG TGCACAACTACCTCTGCGAAAAGTATAATCAGACCAACTTGAAGAACATT GACTGCTCTAAAGCTCATGGTTACGGCACCCTCTCCAGTACGATTCTGAC TCTGTTCTGGGCGGAGTTCGGCATGAGTGATCTCTCCATGCTGCAGCTGA AACCCGGCCCCAGCCCGGAGGAGGCGCTGCAGATCCAGGACTGGCCAGTC TTTACCGAGGTGGTGGGGACGGCCATGTTTGGGCTGTTTCAAGTGGTGTC AGTACTTGTACTTCTCAACCTGCTGATAGCCATCATGAGCACGTCCTACC AGATGACTGAGGACAACAAAGACCAGGAGTGGACGTACGTCTCTGTAAGT GACACATTTTCCGTCATGAGAGGAAATTTGTCGCTTTTCATCTTAACAAT CGCCATATTTCACCCATTTCTGATTATTCTGCACATTTTGGCACCAAATA CAAAGCCGGGGAGAGTCATGAAGATCCCAGCAATCCGTGGAATGTGCTGG TTCTTTTCCCTGTTGGAGCTGCTCATTATCCTGATTGTAGAGGCGCAGAT GTACCGGGTGAGCAGCGAGGATATAGACAGGATGGTGCAGAAGATCCCGA CCTCTGGCTTACAACTGTCCTGGACACAAGCTTTCATCTTCATATGGATG TCTGGACTCTTCGTTGAGGAAATCAACAAAGTTTGGTACCGAGGACTGTC TCCGTACTTCAAAAGCTTCTGGAATCTGCTTGACTTCATGGCCGTTGCAC TCTACACTAGTTATGTCGCCTTGCGATGTCTGGCCATTTTGCAGTGGGAT GGCCATGATATGTCCCTGGACTGGGCAGCCAGAGCTAAATGGAACAGTTT CCAGCCGACCATCGTGGCCGATGCCGTGTTCGCCATGTTTACACTAGATA TGTTTCTACGCGCGATGTGCTTTCTGCGCATGTCACGTAATCTGGGCACT CTCCAGATCTCCTTCGGCCGGATGGTCATGGACATCATCAAGTTCGTCAT TTTCCTCGCGCTCGTGGATCTCGCGTTTGCCTGTGGTTTCAACCAACTCT ACTGGTTCTATGGGTCTGTGCACAACTACCTCTGCGAAAAGTATAATCAG ACCAACTTGAAGAACATTGACTGCTCTAAAGCTCATGGTTACGGCACCCT CTCCAGTACGATTCTGACTCTGTTCTGGGCGGAGTTCGGCATGAGTGATC TCTCCATGCTGCAGCTGAAACCCGGCCCCAGCCCGGAGGAGGCGCTGCAG ATCCAGGACTGGCCAGTCTTTACCGAGGTGGTGGGGACGGCCATGTTTGG GCTGTTTCAAGTGGTGTCAGTACTTGTACTTCTCAACCTGCTGATAGCCA TCATGAGCACGTCCTACCAGATGACTGAGGACAACAAAGACCAGGAGTGG ACGTACGTCTCTGTAAGTGACACATTTTCCGTCATGAGAGGAAATTTGTC GCTTTTCATCTTAACAATCGCCATATTTCACCCATTTCTGATTATTCTGC ACATTTTGGCACCAAATACAAAGCCGGGGAGAGTCATGAAGATCCCAGCA ATCCGTGGAATGTGCTGGTTCTTTTCCCTGTTGGAGCTGCTCATTATCCT GATTGTAGAGGCGCAGATGTACCGGGTGAGCAGCGAGGATATAGACAGGA TGGTGCAGAAGATCCCGACCTCTGGCTTACAACTGTCCTGGACACAAGCT TTCATCTTCATATGGATGTCTGGACTCTTCGTTGAGGAAATCAACAAAGT TTGGTACCGAGGACTGTCTCCGTACTTCAAAAGCTTCTGGAATCTGCTTG ACTTCATGGCCGTTGCACTCTACACTAGTTATGTCGCCTTGCGATGTCTG GCCATTTTGCAGTGGGATGGCCATGATATGTCCCTGGACTGGGCAGCCAG AGCTAAATGGAACAGTTTCCAGCCGACCATCGTGGCCGATGCCGTGTTCG CCATGTTTACACTAGATATGTTTCTACGCGCGATGTGCTTTCTGCGCATG TCACGTAATCTGGGCACTCTCCAGATCTCCTTCGGCCGGATGGTCATGGA CATCATCAAGTTCGTCATTTTCCTCGCGCTCGTGGATCTCGCGTTTGCCT GTGGTTTCAACCAACTCTACTGGTTCTATGGGTCTGTGCACAACTACCTC TGCGAAAAGTATAATCAGACCAACTTGAAGAACATTGACTGCTCTAAAGC TCATGGTTACGGCACCCTCTCCAGTACGATTCTGACTCTGTTCTGGGCGG AGTTCGGCATGAGTGATCTCTCCATGCTGCAGCTGAAACCCGGCCCCAGC CCGGAGGAGGCGCTGCAGATCCAGGACTGGCCAGTCTTTACCGAGGTGGT GGGGACGGCCATGTTTGGGCTGTTTCAAGTGGTGTCAGTACTTGTACTTC TCAACCTGCTGATAGCCATCATGAGCACGTCCTACCAGATGACTGAGGAC AACAAAGACCAGGAGTGGACGTACGTCTCTGTAAGTGACACATTTTCCGT CATGAGAGGAAATTTGTCGCTTTTCATCTTAACAATCGCCATATTTCACC CATTTCTGATTATTCTGCACATTTTGGCACCAAATACAAAGCCGGGGAGA GTCATGAAGATCCCAGCAATCCGTGGAATGTGCTGGTTCTTTTCCCTGTT GGAGCTGCTCATTATCCTGATTGTAGAGGCGCAGATGTACCGGGTGAGCA GCGAGGATATAGACAGGATGGTGCAGAAGATCCCGACCTCTGGCTTACAA CTGTCCTGGACACAAGCTTTCATCTTCATATGGATGTCTGGACTCTTCGT TGAGGAAATCAACAAAGTTTGGTACCGAGGACTGTCTCCGTACTTCAAAA GCTTCTGGAATCTGCTTGACTTCATGGCCGTTGCACTCTACACTAGTTAT GTCGCCTTGCGATGTCTGGCCATTTTGCAGTGGGATGGCCATGATATGTC CCTGGACTGGGCAGCCAGAGCTAAATGGAACAGTTTCCAGCCGACCATCG TGGCCGATGCCGTGTTCGCCATGTTTACACTAGATATGTTTCTACGCGCG ATGTGCTTTCTGCGCATGTCACGTAATCTGGGCACTCTCCAGATCTCCTT CGGCCGGATGGTCATGGACATCATCAAGTTCGTCATTTTCCTCGCGCTCG TGGATCTCGCGTTTGCCTGTGGTTTCAACCAACTCTACTGGTTCTATGGG TCTGTGCACAACTACCTCTGCGAAAAGTATAATCAGACCAACTTGAAGAA CATTGACTGCTCTAAAGCTCATGGTTACGGCACCCTCTCCAGTACGATTC TGACTCTGTTCTGGGCGGAGTTCGGCATGAGTGATCTCTCCATGCTGCAG CTGAAACCCGGCCCCAGCCCGGAGGAGGCGCTGCAGATCCAGGACTGGCC AGTCTTTACCGAGGTGGTGGGGACGGCCATGTTTGGGCTGTTTCAAGTGG TGTCAGTACTTGTACTTCTCAACCTGCTGATAGCCATCATGAGCACGTCC TACCAGATGACTGAGGACAACAAAGACCAGGAGTGGACGTACGTCTCTGT AAGTGACACATTTTCCGTCATGAGAGGAAATTTGTCGCTTTTCATCTTAA CAATCGCCATATTTCACCCATTTCTGATTATTCTGCACATTTTGGCACCA AATACAAAGCCGGGGAGAGTCATGAAGATCCCAGCAATCCGTGGAATGTG CTGGTTCTTTTCCCTGTTGGAGCTGCTCATTATCCTGATTGTAGAGGCGC AGATGTACCGGGTGAGCAGCGAGGATATAGACAGGATGGTGCAGAAGATC CCGACCTCTGGCTTACAACTGTCCTGGACACAAGCTTTCATCTTCATATG GATGTCTGGACTCTTCGTTGAGGAAATCAACAAAGTTTGGTACCGAGGAC TGTCTCCGTACTTCAAAAGCTTCTGGAATCTGCTTGACTTCATGGCCGTT GCACTCTACACTAGTTATGTCGCCTTGCGATGTCTGGCCATTTTGCAGTG GGATGGCCATGATATGTCCCTGGACTGGGCAGCCAGAGCTAAATGGAACA GTTTCCAGCCGACCATCGTGGCCGATGCCGTGTTCGCCATGTTTACACTA GATATGTTTCTACGCGCGATGTGCTTTCTGCGCATGTCACGTAATCTGGG CACTCTCCAGATCTCCTTCGGCCGGATGGTCATGGACATCATCAAGTTCG TCATTTTCCTCGCGCTCGTGGATCTCGCGTTTGCCTGTGGTTTCAACCAA CTCTACTGGTTCTATGGGTCTGTGCACAACTACCTCTGCGAAAAGTATAA TCAGACCAACTTGAAGAACATTGACTGCTCTAAAGCTCATGGTTACGGCA CCCTCTCCAGTACGATTCTGACTCTGTTCTGGGCGGAGTTCGGCATGAGT GATCTCTCCATGCTGCAGCTGAAACCCGGCCCCAGCCCGGAGGAGGCGCT GCAGATCCAGGACTGGCCAGTCTTTACCGAGGTGGTGGGGACGGCCATGT TTGGGCTGTTTCAAGTGGTGTCAGTACTTGTACTTCTCAACCTGCTGATA GCCATCATGAGCACGTCCTACCAGATGACTGAGGACAACAAAGACCAGGA GTGGACGTACGTCTCTGTAAGTGACACATTTTCCGTCATGAGAGGAAATT TGTCGCTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000129 | genome | Sc0000129:533503..535965 - |
Properties
Property Name | Value |
Transcript id | BL97313_cuf0 |
Biotype | protein_coding |
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