transcript:BL97310_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97310_cuf3
Unique Nametranscript:BL97310_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97310_cuf3

>transcript:BL97310_cuf3-protein ID=transcript:BL97310_cuf3-protein|Name=transcript:BL97310_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=214bp
MAWSGWSGCEECVAGSEFRTRSCASPPPQHGGQECTGNHTMSRPCQVDTE
LCGPECPSGLVLNTCHTGSLTCLDLKDSNELAENTTCTAVCTCPGEQLLH
DGSCVDIGDCPCTYREDELPGYVSDPGVELQMFTLSAEETISLFCNNCTC
TDGKMVCTTAVCEVDGNWSLWSSWSACSLPCGGGGQYRHRSCDNPSPANG
GQACAGLGQENRSC
Run BLAST on NCBI

mRNA from alignment at Sc0000038:1600463..1602358+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97310_cuf3 ID=transcript:BL97310_cuf3|Name=transcript:BL97310_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1896bp|location=Sequence derived from alignment at Sc0000038:1600463..1602358+ (Branchiostoma lanceolatum)
GGATGGCTTGGTCAGGCTGGTCTGGGTGTGAGGAGTGCGTGGCAGGTAGT
GAGTTCCGTACGCGGTCCTGTGCCAGCCCCCCTCCTCAACATGGCGGTCA
GGAGTGCACAGGGAACCACACCATGTCCCGCCCCTGCCAGGTGGACACAG
AGCTGTGTGGACGTGAGTAGTTCACATGTTTTCATGTCTCACAGGGTTGG
ACATGCACAATGTACAAGTCCATAGGTCTTAATGTACTGGCCCGATTTTT
GGTTTCATGCTCTAAAAGTGCATGTCATAGACCTATTTACATGCCCACAA
GAGTTCCAAAGTGACAAAAGAAAAAGGTATATACCTGTCCAGAAAACTCA
TCTTTGTATTGGATTGAAGTTAAAAAATTAATACATAATTTTATACCTAT
TTTCCCCAGCTGAATGTCCATCTGGCCTGGTGTTGAACACCTGCCACACA
GGCTCTCTAACCTGTCTAGACCTGAAGGACTCCAATGAGCTCGCAGAGAA
CACCACCTGCACAGCTGTGTGCACCTGTCCAGGTGAACAGCTGCTGCACG
ATGGGAGCTGTGTGGACATAGGGGACTGTCCATGTACCTATAGGGAGGAT
GAGCTACCAGGTAAGGGACTGTTCATGTACCTATCAGGTTGGGGACTGTA
GACCATGTATGATTTACAGTATCTCGGTGAAAGTGCCAATTTCCAATTCA
CTGAGTAGTACTCTTGGTCCACGACTCTAGACATTACTTATTTCAGTTTC
AACTCAAAATACTAAATTATGGACACAGTCCACACTATGTTGCATTTTTC
AGCCACCTCATTTAACTTCAGATTAGAAGCTATATTTATAGCCTTAATGA
AGTGGCAGTATATACATGTGGGGGATAGATCTATTTCAAGTATATACTAG
TTCTCAATGGCTCCCTCCATCTTGAACGATGAACGGATTGGTCTTCATTG
ATGACTGAACGAGCCAATTCTTCAGCAGCAGTCTCTGCCTACACCACATC
TTGTGCAGGTGAATGTTGTTGTATGGGTTGTAGGTGCTTACTTACTGTGA
CATTGAACATATAAACTGACTTTTCTATCTTTACCCAGGTTACGTGTCTG
ACCCTGGTGTGGAGCTTCAAATGTTCACATTATCTGCTGAGGAGACTATA
TCTCTTTTCTGTAACAACTGGTTAGTATATCAATCATTTTGAACAACCTT
CTAAGCTCGACTCAATGTTTTTCTACTATACAGTTGTACAGTNAATGTTT
TTCTACAATACAGTTGCACAGTACCTGTTTGTGATTTATCATAGTGAAAT
GGACAGCTTCAAATGGTCTTGACTTTCATGTCTTGGGATGTTTCCTTCCT
AATGCGTGTTTGGTTGTCCCACAGCACCTGTACTGATGGGAAGATGGTTT
GCACCACAGCTGTATGTGAAGGTACACATTCAACATTTTGTTTCTCAAGA
ATGACACAAGACAAAAACAATTTTTTTGTATTTTTTTCATGTATCAAAGA
TGTATTTTAGGACCACTCTCTTCAATATTCCCGAAAACGACTGGTCCAGG
TATAGAGATGTACTTAGATAGCAATGTTGTTACAGTGTATTATTCTTATA
TGGCCGATGAATTGTACGGCAAACTTAGCATTAGTTATGTCTGTATAAAA
CCTGCCAAGAAAAATGTTAGTATGTTGTGTCAAAATGTAATACTATTTGG
ATTTCATGATTTATTTTTTTATTTTTTTATTTATTCTGTCTAGTTGATGG
TAACTGGAGCCTGTGGTCCTCCTGGTCAGCCTGCTCTTTACCATGTGGGG
GAGGGGGGCAGTACCGCCACAGATCATGTGACAACCCGTCCCCAGCCAAT
GGTGGCCAGGCGTGTGCCGGGCTGGGCCAGGAGAACAGGTCGTGTA

Coding sequence (CDS) from alignment at Sc0000038:1600463..1602358+

>transcript:BL97310_cuf3 ID=transcript:BL97310_cuf3|Name=transcript:BL97310_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3210bp|location=Sequence derived from alignment at Sc0000038:1600463..1602358+ (Branchiostoma lanceolatum)
ATGGCTTGGTCAGGCTGGTCTGGGTGTGAGGAGTGCGTGGCAGGTAGTGA
GTTCCGTACGCGGTCCTGTGCCAGCCCCCCTCCTCAACATGGCGGTCAGG
AGTGCACAGGGAACCACACCATGTCCCGCCCCTGCCAGGTGGACACAGAG
CTGTGTGGACCTGAATGTCCATCTGGCCTGGTGTTGAACACCTGCCACAC
AGGCTCTCTAACCTGTCTAGACCTGAAGGACTCCAATGAGCTCGCAGAGA
ACACCACCTGCACAGCTGTGTGCACCTGTCCAGGTGAACAGCTGCTGCAC
GATGGGAGCTGTGTGGACATAGGGGACTGTCCATGTACCTATAGGGAGGA
TGAGCTACCAGGTTACGTGTCTGACCCTGGTGTGGAGCTTCAAATGTTCA
CATTATCTGCTGAGGAGACTATATCTCTTTTCTGTAACAACTGCACCTGT
ACTGATGGGAAGATGGTTTGCACCACAGCTGTATGTGAAGTTGATGGTAA
CTGGAGCCTGTGGTCCTCCTGGTCAGCCTGCTCTTTACCATGTGGGGGAG
GGGGGCAGTACCGCCACAGATCATGTGACAACCCGTCCCCAGCCAATGGT
GGCCAGGCGTGTGCCGGGCTGGGCCAGGAGAACAGGTCGTGTATGGCTTG
GTCAGGCTGGTCTGGGTGTGAGGAGTGCGTGGCAGGTAGTGAGTTCCGTA
CGCGGTCCTGTGCCAGCCCCCCTCCTCAACATGGCGGTCAGGAGTGCACA
GGGAACCACACCATGTCCCGCCCCTGCCAGGTGGACACAGAGCTGTGTGG
ACCTGAATGTCCATCTGGCCTGGTGTTGAACACCTGCCACACAGGCTCTC
TAACCTGTCTAGACCTGAAGGACTCCAATGAGCTCGCAGAGAACACCACC
TGCACAGCTGTGTGCACCTGTCCAGGTGAACAGCTGCTGCACGATGGGAG
CTGTGTGGACATAGGGGACTGTCCATGTACCTATAGGGAGGATGAGCTAC
CAGGTTACGTGTCTGACCCTGGTGTGGAGCTTCAAATGTTCACATTATCT
GCTGAGGAGACTATATCTCTTTTCTGTAACAACTGCACCTGTACTGATGG
GAAGATGGTTTGCACCACAGCTGTATGTGAAGTTGATGGTAACTGGAGCC
TGTGGTCCTCCTGGTCAGCCTGCTCTTTACCATGTGGGGGAGGGGGGCAG
TACCGCCACAGATCATGTGACAACCCGTCCCCAGCCAATGGTGGCCAGGC
GTGTGCCGGGCTGGGCCAGGAGAACAGGTCGTGTATGGCTTGGTCAGGCT
GGTCTGGGTGTGAGGAGTGCGTGGCAGGTAGTGAGTTCCGTACGCGGTCC
TGTGCCAGCCCCCCTCCTCAACATGGCGGTCAGGAGTGCACAGGGAACCA
CACCATGTCCCGCCCCTGCCAGGTGGACACAGAGCTGTGTGGACCTGAAT
GTCCATCTGGCCTGGTGTTGAACACCTGCCACACAGGCTCTCTAACCTGT
CTAGACCTGAAGGACTCCAATGAGCTCGCAGAGAACACCACCTGCACAGC
TGTGTGCACCTGTCCAGGTGAACAGCTGCTGCACGATGGGAGCTGTGTGG
ACATAGGGGACTGTCCATGTACCTATAGGGAGGATGAGCTACCAGGTTAC
GTGTCTGACCCTGGTGTGGAGCTTCAAATGTTCACATTATCTGCTGAGGA
GACTATATCTCTTTTCTGTAACAACTGCACCTGTACTGATGGGAAGATGG
TTTGCACCACAGCTGTATGTGAAGTTGATGGTAACTGGAGCCTGTGGTCC
TCCTGGTCAGCCTGCTCTTTACCATGTGGGGGAGGGGGGCAGTACCGCCA
CAGATCATGTGACAACCCGTCCCCAGCCAATGGTGGCCAGGCGTGTGCCG
GGCTGGGCCAGGAGAACAGGTCGTGTATGGCTTGGTCAGGCTGGTCTGGG
TGTGAGGAGTGCGTGGCAGGTAGTGAGTTCCGTACGCGGTCCTGTGCCAG
CCCCCCTCCTCAACATGGCGGTCAGGAGTGCACAGGGAACCACACCATGT
CCCGCCCCTGCCAGGTGGACACAGAGCTGTGTGGACCTGAATGTCCATCT
GGCCTGGTGTTGAACACCTGCCACACAGGCTCTCTAACCTGTCTAGACCT
GAAGGACTCCAATGAGCTCGCAGAGAACACCACCTGCACAGCTGTGTGCA
CCTGTCCAGGTGAACAGCTGCTGCACGATGGGAGCTGTGTGGACATAGGG
GACTGTCCATGTACCTATAGGGAGGATGAGCTACCAGGTTACGTGTCTGA
CCCTGGTGTGGAGCTTCAAATGTTCACATTATCTGCTGAGGAGACTATAT
CTCTTTTCTGTAACAACTGCACCTGTACTGATGGGAAGATGGTTTGCACC
ACAGCTGTATGTGAAGTTGATGGTAACTGGAGCCTGTGGTCCTCCTGGTC
AGCCTGCTCTTTACCATGTGGGGGAGGGGGGCAGTACCGCCACAGATCAT
GTGACAACCCGTCCCCAGCCAATGGTGGCCAGGCGTGTGCCGGGCTGGGC
CAGGAGAACAGGTCGTGTATGGCTTGGTCAGGCTGGTCTGGGTGTGAGGA
GTGCGTGGCAGGTAGTGAGTTCCGTACGCGGTCCTGTGCCAGCCCCCCTC
CTCAACATGGCGGTCAGGAGTGCACAGGGAACCACACCATGTCCCGCCCC
TGCCAGGTGGACACAGAGCTGTGTGGACCTGAATGTCCATCTGGCCTGGT
GTTGAACACCTGCCACACAGGCTCTCTAACCTGTCTAGACCTGAAGGACT
CCAATGAGCTCGCAGAGAACACCACCTGCACAGCTGTGTGCACCTGTCCA
GGTGAACAGCTGCTGCACGATGGGAGCTGTGTGGACATAGGGGACTGTCC
ATGTACCTATAGGGAGGATGAGCTACCAGGTTACGTGTCTGACCCTGGTG
TGGAGCTTCAAATGTTCACATTATCTGCTGAGGAGACTATATCTCTTTTC
TGTAACAACTGCACCTGTACTGATGGGAAGATGGTTTGCACCACAGCTGT
ATGTGAAGTTGATGGTAACTGGAGCCTGTGGTCCTCCTGGTCAGCCTGCT
CTTTACCATGTGGGGGAGGGGGGCAGTACCGCCACAGATCATGTGACAAC
CCGTCCCCAGCCAATGGTGGCCAGGCGTGTGCCGGGCTGGGCCAGGAGAA
CAGGTCGTGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97310gene:BL97310Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97310_cuf3transcript:BL97310_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97310_cuf3-E1BL97310_cuf3-E1-1564476830-198468Branchiostoma lanceolatumexon
BL97310_cuf3-E2BL97310_cuf3-E2-1564476830-198470Branchiostoma lanceolatumexon
BL97310_cuf3-E3BL97310_cuf3-E3-1564476830-198472Branchiostoma lanceolatumexon
BL97310_cuf3-E4BL97310_cuf3-E4-1564476830-198474Branchiostoma lanceolatumexon
BL97310_cuf3-E5BL97310_cuf3-E5-1564476830-198477Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000038genomeSc0000038:1600463..1602358 +
Properties
Property NameValue
Transcript idBL97310_cuf3
Biotypeprotein_coding