transcript:BL97282_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97282_cuf5
Unique Nametranscript:BL97282_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97282_cuf5

>transcript:BL97282_cuf5-protein ID=transcript:BL97282_cuf5-protein|Name=transcript:BL97282_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=209bp
GDRRVRDVETGGPAEAPAQQGPAKRLPHWCKYVAWVLVVLSAVGSAVFTA
LYSLTWGKDKSERWLSAYFITFLVDMFLLQPAKILLLTILTSSIRKPQAI
QKIFEEKRGPVSIDARTVFAQKARFSSDAFRMRRKMERLSMTSLANIKQA
RLRQRRDRRVVNTFWDIMWFCCCLLLVIIISNEHHNTTEGFYQTQSMTNT
FVQSMDEVS
Run BLAST on NCBI

mRNA from alignment at Sc0000012:4137415..4140375+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97282_cuf5 ID=transcript:BL97282_cuf5|Name=transcript:BL97282_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2961bp|location=Sequence derived from alignment at Sc0000012:4137415..4140375+ (Branchiostoma lanceolatum)
GGCGACCGCCGGGTCCGAGATGTGGAGACGGGCGGCCCAGCTGAGGCACC
CGCCCAGCAAGGACCAGCCAAGCGCCTGCCGCACTGGTGCAAGTACGTGG
CCTGGGTGCTGGTGGTGCTGTCTGCTGTGGGATCAGCTGTCTTCACCGCG
CTGTACAGTCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGTCTGC
ATACTTCATCACCTTTCTGGTGGACATGTTCCTCCTGCAACCAGCAAAGG
TAAGGACATGCTATTTGTTGAATTGTCTAGATATTAAAGGATTATCATTG
TAACATCTTTACATGTTTGTTACTGTTGCAGTTGCTACATGTACCTGTTA
CTAACATCCATGCACAATGTTGTTTGATGATACCTGACTTCCTCAGAACA
TGTTGTATACAAACCACATCCTAAGGATCATATTGCCATATGCATCTTCA
GCTACTGTTCCATTTGTTCTCAATAGATCTACTATTAATAATAATAATAA
ACAATGTTTTCAGAAATCCTAACAAGCAATGCTTTTGTCTTTCAGATATT
GCTCCTCACAATCTTGACTTCATCCATTCGCAAGCCGCAAGCCATCCAGA
AGATTTTTGAAGAGAAGCGGGGCCCCGTTTCCATTGATGCCAGGACAGTG
TTTGCACAAAAGGCACGCTTCAGCTGTAAGTTTTAGCACACATGTTTGTA
GAAAACAGCATTATATATCATTACCATGAAGATGTAGACTATGCACATGT
TAGAGTCCATTCCAAGACACCGCACGGATGTTTTTTGCCATTGTTTAGAA
CTAATTTGAAACCTTTGTAACTATTTGTAATATAAATGTCATGGTCTCTT
ACATTTCTAAATGTGTTTACACTTTCTAAATGTTCCCACAGTTTCGTGGA
ATATTCAAAATATTCATGGCACTCGGAACAACATTTCTGATACTTTCTAA
AGATTGACTACAGCACACTGCCTTTATTTCGAAGTCTGAATCATTTTTTC
GAAAGAAGAAACTCACAATCTGCTGTTAATTAGTTAATAGCACCCAAAAA
TAGACCGTTGAAAGGAGCGGTGACACCCCGCCGTGCTCTCACGCCGAGTC
GGGCGTAATGTAAACAAACAGTTAATTTCTGCCTCTAACGTTAGCAGGAC
AACAATCCGAAAGAAACATTATCAGTGTCTCTCGGCTTCTCTATCAATCA
AAACTAGAAATCTTGCAGAAACGACCCAAATGCGACAGAAATAACAAAGT
ACCGAAGGAAGCTGTAAGTGGTAACAGTAGCCTGCCGTGCTGCCCTCCCC
ACCGGGACCGCTAGAACAAGAATGTTCAACTGGGACGTAAAAAACCCCTG
CAGAAACTCCGCCAGGTCCAGTCTGATTATGAACGCCAATCAGCCAGTAC
AGAAAACATACAGGCTTTATTGTTAGCTGGACTGTGTAAGATAAAGTCCT
CTCTTGTGGGATTTGTTTCCGAACCAGAACGCCTCGTGGGAAGTTTGTCC
CTGTGTTGTTGTTCCCCCGGCAGACGGCATGGCTGTTTCTCCCGGGGAGG
AGTTAAAACACGTTGTCTAAAATGTCTATAGCTATCTTTTAACGTATGTT
GATAGAATTTAAGACTTGAATGCTACAATCTAAGCATTACAGTAGTATTG
GTGTGATGTTATTACTGTGAACTTTTGTATCTATAATTATTTGACAATAA
TTTCTAAGAATGTTCCCCCTACACACAGAATAGACTTCCCCAGGCAGGCC
GCCACATGTTAGAATTGTTGCAACAGAAATCTACGTTCTTTTTTGGTGTT
TTCCTCCAGAATCTTCGTGATTTTGTCGGTAAGAATCTCTACAAAAAACA
GTTTACAATTTACTGATACCATGGGAAAAGGAAGCCTCCCTTTGACTGTA
CATGTCGCCGAACTGAGTGACAGATCAAAAAACCCTTTGGGGCTAGCCGG
CTCTCCTTGAGCTCCCTTTGCATTGTGCCGATTGTTGGGCTTATTTGACG
TGGATAAAACTTTTGCCTTTGCTCAGTACGTGTGTTATTTTGACCACTGA
TCATTTGCAATGTTTGCTAGCCCTTTTTGTGCAGCAAAATTACAGTTGAA
TTGTGCTTATCCTCTGGAGGAATTCTTCCCGATGTCCACAGACAGTGTCA
CGCCACAGTGCCTTCCTGCGCGGTCGGCGGTCCCCGCTCGATCCAAAACA
TGCTTTGTTAGGATTAGCGGCTCGTTACGGGGGGCAAATGACCCAAATCT
TTATTTCGAAATCTTTCGAAACTTGACACAAACCAATATATATTTCAAAT
CTATTAAAAAAAATGATCTCTTTTGACTGTCACTTTCGAAATGTTTGCAA
ATTATCATAACAACTTCTAAAACATGGTACTCTCGTATTTCTTTTTTTTC
GAAACATTTATGAATATTTCTAAAGATTTGTAATTATATAACAATAATTC
GAATATATTACAAATATCATAAAAAAATCCGTGTGGTGACTTGGAATGGA
CTCTACTACAAGATTAGAAACTGTTTGTTAGATGGTGAAAGAAAGCCTGT
GTGAGTGTGCTCCTAGTTCCACACCCTGTTTTGTGAATTGAGTTGACATT
TCCTCTTGCATGATAGTTTGTATATTATCCAGGTGCTGGGGGTTTCCACT
TTTCTAACAAATACAGAGCGTATATGTGACTCTATTGATATTTTTTGATA
TGCTTACTACAGCCGATGCATTTCGCATGAGGAGGAAGATGGAACGTCTT
TCGATGACATCCCTTGCCAACATCAAACAAGCGAGACTGAGGCAGCGCAG
GGACAGGAGAGTTGTGAACACCTTTTGGGACATCATGTGGTTCTGCTGTT
GCCTCCTGCTTGTCATCATCATCTCCAACGAGCACCACAACACCACAGAG
GGTTTCTATCAGACACAGAGCATGACCAACACCTTTGTGCAGTCGATGGA
CGAGGTAAGTT

Coding sequence (CDS) from alignment at Sc0000012:4137415..4140375+

>transcript:BL97282_cuf5 ID=transcript:BL97282_cuf5|Name=transcript:BL97282_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1881bp|location=Sequence derived from alignment at Sc0000012:4137415..4140375+ (Branchiostoma lanceolatum)
GGCGACCGCCGGGTCCGAGATGTGGAGACGGGCGGCCCAGCTGAGGCACC
CGCCCAGCAAGGACCAGCCAAGCGCCTGCCGCACTGGTGCAAGTACGTGG
CCTGGGTGCTGGTGGTGCTGTCTGCTGTGGGATCAGCTGTCTTCACCGCG
CTGTACAGTCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGTCTGC
ATACTTCATCACCTTTCTGGTGGACATGTTCCTCCTGCAACCAGCAAAGA
TATTGCTCCTCACAATCTTGACTTCATCCATTCGCAAGCCGCAAGCCATC
CAGAAGATTTTTGAAGAGAAGCGGGGCCCCGTTTCCATTGATGCCAGGAC
AGTGTTTGCACAAAAGGCACGCTTCAGCTCCGATGCATTTCGCATGAGGA
GGAAGATGGAACGTCTTTCGATGACATCCCTTGCCAACATCAAACAAGCG
AGACTGAGGCAGCGCAGGGACAGGAGAGTTGTGAACACCTTTTGGGACAT
CATGTGGTTCTGCTGTTGCCTCCTGCTTGTCATCATCATCTCCAACGAGC
ACCACAACACCACAGAGGGTTTCTATCAGACACAGAGCATGACCAACACC
TTTGTGCAGTCGATGGACGAGGTAAGTGGCGACCGCCGGGTCCGAGATGT
GGAGACGGGCGGCCCAGCTGAGGCACCCGCCCAGCAAGGACCAGCCAAGC
GCCTGCCGCACTGGTGCAAGTACGTGGCCTGGGTGCTGGTGGTGCTGTCT
GCTGTGGGATCAGCTGTCTTCACCGCGCTGTACAGTCTGACGTGGGGCAA
GGACAAGTCCGAGAGGTGGCTGTCTGCATACTTCATCACCTTTCTGGTGG
ACATGTTCCTCCTGCAACCAGCAAAGATATTGCTCCTCACAATCTTGACT
TCATCCATTCGCAAGCCGCAAGCCATCCAGAAGATTTTTGAAGAGAAGCG
GGGCCCCGTTTCCATTGATGCCAGGACAGTGTTTGCACAAAAGGCACGCT
TCAGCTCCGATGCATTTCGCATGAGGAGGAAGATGGAACGTCTTTCGATG
ACATCCCTTGCCAACATCAAACAAGCGAGACTGAGGCAGCGCAGGGACAG
GAGAGTTGTGAACACCTTTTGGGACATCATGTGGTTCTGCTGTTGCCTCC
TGCTTGTCATCATCATCTCCAACGAGCACCACAACACCACAGAGGGTTTC
TATCAGACACAGAGCATGACCAACACCTTTGTGCAGTCGATGGACGAGGT
AAGTGGCGACCGCCGGGTCCGAGATGTGGAGACGGGCGGCCCAGCTGAGG
CACCCGCCCAGCAAGGACCAGCCAAGCGCCTGCCGCACTGGTGCAAGTAC
GTGGCCTGGGTGCTGGTGGTGCTGTCTGCTGTGGGATCAGCTGTCTTCAC
CGCGCTGTACAGTCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGT
CTGCATACTTCATCACCTTTCTGGTGGACATGTTCCTCCTGCAACCAGCA
AAGATATTGCTCCTCACAATCTTGACTTCATCCATTCGCAAGCCGCAAGC
CATCCAGAAGATTTTTGAAGAGAAGCGGGGCCCCGTTTCCATTGATGCCA
GGACAGTGTTTGCACAAAAGGCACGCTTCAGCTCCGATGCATTTCGCATG
AGGAGGAAGATGGAACGTCTTTCGATGACATCCCTTGCCAACATCAAACA
AGCGAGACTGAGGCAGCGCAGGGACAGGAGAGTTGTGAACACCTTTTGGG
ACATCATGTGGTTCTGCTGTTGCCTCCTGCTTGTCATCATCATCTCCAAC
GAGCACCACAACACCACAGAGGGTTTCTATCAGACACAGAGCATGACCAA
CACCTTTGTGCAGTCGATGGACGAGGTAAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97282gene:BL97282Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97282_cuf5-E1BL97282_cuf5-E1-1564476830-112241Branchiostoma lanceolatumexon
BL97282_cuf5-E2BL97282_cuf5-E2-1564476830-112243Branchiostoma lanceolatumexon
BL97282_cuf5-E3BL97282_cuf5-E3-1564476830-112246Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97282_cuf5transcript:BL97282_cuf5-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000012genomeSc0000012:4137415..4140375 +
Properties
Property NameValue
Transcript idBL97282_cuf5
Biotypeprotein_coding