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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97279_cuf1 >transcript:BL97279_cuf1-protein ID=transcript:BL97279_cuf1-protein|Name=transcript:BL97279_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=457bp
MALWCTRRSLSAVLAVCCLLYVTTMFSLPGSRHARVNAVPTSSVRLHRVN RAFLPPATTTQVPQALNTSVDRKAVLVLSQLRTDAEVVGEIFSQQEGLFY FPEHLWSLLYPDPFPNSLLERGALSESDFYLNQTDRKRKWASLNVTLRAL FRCDFDNIFNRDDGEFQVPPSVAKDMFCREIQKYAPLREGFSCHGSPAEI VRRMTSLCAAKATVVVMMTGITHVENLQSLVEDEAMNVKVIEVVHDPRAM LVSWMNAVPKKRGVDTDRRGFFDTRGLALTATEMKRMCVGMVTNLMFWLA SSPPFRTNYAVLRYEDLRADPRTLADNILSFLGHQPASGAALQRVVERID RNIEDIKDGNGEWRKNLTVAGATKIQGRCSEVIRKFGYKFVKSERDLTDN TTSLVGTLPIEVPGFMSNRKRLVLTSPLSTNDTVILHKASVRTVVHYHLK VPENGTQ Run BLAST on NCBI mRNA from alignment at Sc0000012:1676877..1680103+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97279_cuf1 ID=transcript:BL97279_cuf1|Name=transcript:BL97279_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3227bp|location=Sequence derived from alignment at Sc0000012:1676877..1680103+ (Branchiostoma lanceolatum) AAGTCTGTGTACGAGGCTAGGGTTACGCAGAGTTTACAGAGTTCGGGGTT
CGCTGCTCGGCAGGCGTTCCTGTTTTTCCTGAGGCTCGGCGGTAAGTGGC
AAAACAGGTTTTGTACACGGTACGAGACGTCCAGAAAACGGGCAATGGGG
CTGTTTTCTAACGTCTGCACGGTGTTTTAGAGGTTCTCTGCTGATCATGA
TGTAACCACGTTTTACACAGGTACTGAAGATGGCTCTGTGGTGCACCAGA
CGTAGTCTGTCTGCCGTACTGGCGGTGTGTTGCCTCCTCTACGTGACTAC
CATGTTCAGCCTACCTGGGTCGCGCCATGCCCGTGTAAACGCCGTCCCCA
CTAGTAGCGTCAGACTTCACCGAGTCAACCGTGCCTTCTTACCGCCTGCT
ACGACGACTCAAGTTCCGCAGGCCCTCAACACGTCCGTGGACAGGAAGGC
TGTTTTAGTCCTGTCACAACTAAGAACAGATGCAGAGGTGGTGGGAGAGA
TTTTCAGCCAACAGGAGGGTTTGTTCTACTTCCCTGAACATCTCTGGTCG
CTCCTGTACCCTGACCCATTTCCCAACTCCCTGTTGGAAAGGGGGGCGTT
GTCAGAAAGCGACTTCTATCTGAACCAAACGGACAGAAAGAGAAAGTGGG
CGTCTCTAAATGTTACCTTGCGGGCTCTGTTTCGTTGCGACTTTGACAAC
ATTTTCAACAGAGACGACGGCGAGTTCCAGGTTCCCCCCAGCGTTGCCAA
GGACATGTTCTGCCGGGAAATCCAGAAGTACGCTCCCTTGCGAGAAGGCT
TCTCATGTCACGGCTCACCTGCTGAGATCGTCCGGCGTATGACGTCACTC
TGCGCTGCCAAGGCGACGGTAGTGGTCATGATGACGGGTATAACACATGT
AGAGAACCTTCAGTCGTTAGTTGAAGACGAGGCAATGAACGTGAAGGTTA
TTGAGGTTGTTCATGACCCCCGTGCGATGCTGGTGTCGTGGATGAACGCT
GTGCCGAAAAAACGGGGAGTGGATACAGACAGACGGGGCTTCTTTGATAC
CAGAGGGTGAGTTAAGACGTTTGTAACTTAAGACGATTCCGCGTCCATAC
ACAGTGCTTTCTTTTTAACTGTTGCGTTTCTTCGAAATACTCATACGTAT
ACGTTTTATGAATGTTTATGAATAATTGTTGTGTTTTTGACGGCGACTGT
ACGCAGCACATGAGGTCATGATGGTACACTTGTATTGAACGATTTCATCC
ATTCATTCATTCACTCACTTCTTCTTCTTCGTGTTTCCTTCCTCAGGAGA
GAATAGCTTCATCACACTTAGAATATAACAGTACTGATACATCTTTAAAA
TATAAAAACATATATACAAATGTTACGGTATATGACATCCGTCACATGGA
TATGGCACTCGTTGTTCTACTGTAGTGTTCAATTTCACTTCTGTCTCTCC
TCCCCTCATCGGGTATTATTTTCTTCAACTTATACGAGGGGATGTCAATA
TAAAACGCCTTTTTTACCATAGCAGGTTAAAAAAATCTCTTCTCGAGACT
TGGAAGCTTGTCGGAGGCAAACAGCAGTAAAATGGAAGTTTTATATTGAC
GTCCCCTCGTAACTTGGCATAACATAATCACCAGTCTTATTTCCTTTCAC
AATTTCCAAGTTGTGACCCTGACATACATTCTCTAGTGTCCTTTCCTGAC
TCTTGTTTCCAGGTATAGGTAAAGTCTCAGTTCCTCTCAGCTCCGTGTTT
TATTCTTTAAATGTTCGTTCGTTCATTCGTTCATTCCATCTTTCCCTCAC
TCATTCCTTAATTCATTTTCAAATTCATACATTATGAGAAACTTTTTATC
GTTGTGGTTCTCCGTGTGAATTTTCCAATGAGTCATTCATTCATTCATTC
GTTCATTCACTCATACATCATAGCAAACTCTTATCGTTGTTGTCCTCTGG
GTGCATTTTCCAATGATTTCCATCTTGAATTCTTTGTTCATAACCGTAGT
ACGCCATTTTCTTCGCATCTTCTGTAGCCTCGCCCTCACAGCCACCGAGA
TGAAGAGAATGTGCGTTGGCATGGTTACGAACCTGATGTTCTGGTTGGCC
AGCAGCCCGCCTTTCCGTACGAACTACGCCGTGCTGAGGTACGAGGACCT
TCGGGCCGACCCGCGGACCCTCGCCGACAACATCCTCTCATTTCTCGGTC
ATCAGCCTGCTAGTGGGGCGGCCCTTCAGAGGGTGGTCGAAAGGATAGAT
AGAAATATAGAAGACATAAAAGACGGAAACGGAGAGTGGAGAAAGAACCT
AACGGTTGCCGGGGCGACTAAGATACAAGGAAGATGTTCAGAAGTGATAA
GAAAGTTTGGGTATAAGTTTGTTAAGTCGGAGAGAGACTTGACTGACAAT
ACCACCTCTCTTGTGGGAACCTTGCCGATAGAAGTTCCTGGATTTATGAG
TAACAGAAAACGTCTTGTCTTGACGTCTCCGTTGTCTACAAACGACACAG
TAATTCTACATAAGGCGAGCGTCCGAACTGTCGTTCATTATCACTTAAAA
GTCCCAGAAAACGGAACGCAGTAGTATATACATGATCGAGTGACGTAGGT
TTTCAATCACGTGACGGTGACGTCATTCACTGTCCGCCATGTTGGTGGGT
TAGAGACGCATATTATGACGTCAGAGAGTTGTAAACATTCCATCATCATC
TACCTCAGAATGCCCTTTTCTTCACTTGCAATTGTACATACATGTAGTAG
AGTACGTTGCCACAAAAACATAAACATGATAACTCAAGAAGGGAATTTTT
GAAGAAGTGACCAAATACGTTTTTATCTCCGTGAAAACGGAGGTATATTG
TTTTTGGTCTGTGTTCGTCTTGGCCAGGTGGACTCATTCGGTCAGCCAAT
GAGAGAGCGCCTTTCAAATCACCCATGTATTTTCAAAACTGGAGCTGATT
TGTTGAAATATAGTCAATCCAATTACTCAGCCGATTTAAGGCCTGTGACT
GTAACTTTTGATGTATATATCTGTTTCTAACAAAATTTGCCCAGGTGATG
GAAATAACAAATATTTAGAATATCAAAACAAGAATTTTCAATCTCATTTA
TTTGAGGTGAAAAAATCACTTTTTGGTGAAAAATGTATATGTTATTAAAA
GGGCTTGTGCCTACTATGAAACGACTATTTAACAGAGTGATTTTTCCGGG
GTAATAGATAGTATCTCTGTGATGTCT Coding sequence (CDS) from alignment at Sc0000012:1676877..1680103+ >transcript:BL97279_cuf1 ID=transcript:BL97279_cuf1|Name=transcript:BL97279_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2748bp|location=Sequence derived from alignment at Sc0000012:1676877..1680103+ (Branchiostoma lanceolatum) ATGGCTCTGTGGTGCACCAGACGTAGTCTGTCTGCCGTACTGGCGGTGTG TTGCCTCCTCTACGTGACTACCATGTTCAGCCTACCTGGGTCGCGCCATG CCCGTGTAAACGCCGTCCCCACTAGTAGCGTCAGACTTCACCGAGTCAAC CGTGCCTTCTTACCGCCTGCTACGACGACTCAAGTTCCGCAGGCCCTCAA CACGTCCGTGGACAGGAAGGCTGTTTTAGTCCTGTCACAACTAAGAACAG ATGCAGAGGTGGTGGGAGAGATTTTCAGCCAACAGGAGGGTTTGTTCTAC TTCCCTGAACATCTCTGGTCGCTCCTGTACCCTGACCCATTTCCCAACTC CCTGTTGGAAAGGGGGGCGTTGTCAGAAAGCGACTTCTATCTGAACCAAA CGGACAGAAAGAGAAAGTGGGCGTCTCTAAATGTTACCTTGCGGGCTCTG TTTCGTTGCGACTTTGACAACATTTTCAACAGAGACGACGGCGAGTTCCA GGTTCCCCCCAGCGTTGCCAAGGACATGTTCTGCCGGGAAATCCAGAAGT ACGCTCCCTTGCGAGAAGGCTTCTCATGTCACGGCTCACCTGCTGAGATC GTCCGGCGTATGACGTCACTCTGCGCTGCCAAGGCGACGGTAGTGGTCAT GATGACGGGTATAACACATGTAGAGAACCTTCAGTCGTTAGTTGAAGACG AGGCAATGAACGTGAAGGTTATTGAGGTTGTTCATGACCCCCGTGCGATG CTGGTGTCGTGGATGAACGCTGTGCCGAAAAAACGGGGAGTGGATACAGA CAGACGGGGCTTCTTTGATACCAGAGGCCTCGCCCTCACAGCCACCGAGA TGAAGAGAATGTGCGTTGGCATGGTTACGAACCTGATGTTCTGGTTGGCC AGCAGCCCGCCTTTCCGTACGAACTACGCCGTGCTGAGGTACGAGGACCT TCGGGCCGACCCGCGGACCCTCGCCGACAACATCCTCTCATTTCTCGGTC ATCAGCCTGCTAGTGGGGCGGCCCTTCAGAGGGTGGTCGAAAGGATAGAT AGAAATATAGAAGACATAAAAGACGGAAACGGAGAGTGGAGAAAGAACCT AACGGTTGCCGGGGCGACTAAGATACAAGGAAGATGTTCAGAAGTGATAA GAAAGTTTGGGTATAAGTTTGTTAAGTCGGAGAGAGACTTGACTGACAAT ACCACCTCTCTTGTGGGAACCTTGCCGATAGAAGTTCCTGGATTTATGAG TAACAGAAAACGTCTTGTCTTGACGTCTCCGTTGTCTACAAACGACACAG TAATTCTACATAAGGCGAGCGTCCGAACTGTCGTTCATTATCACTTAAAA GTCCCAGAAAACGGAACGCAGTAGATGGCTCTGTGGTGCACCAGACGTAG TCTGTCTGCCGTACTGGCGGTGTGTTGCCTCCTCTACGTGACTACCATGT TCAGCCTACCTGGGTCGCGCCATGCCCGTGTAAACGCCGTCCCCACTAGT AGCGTCAGACTTCACCGAGTCAACCGTGCCTTCTTACCGCCTGCTACGAC GACTCAAGTTCCGCAGGCCCTCAACACGTCCGTGGACAGGAAGGCTGTTT TAGTCCTGTCACAACTAAGAACAGATGCAGAGGTGGTGGGAGAGATTTTC AGCCAACAGGAGGGTTTGTTCTACTTCCCTGAACATCTCTGGTCGCTCCT GTACCCTGACCCATTTCCCAACTCCCTGTTGGAAAGGGGGGCGTTGTCAG AAAGCGACTTCTATCTGAACCAAACGGACAGAAAGAGAAAGTGGGCGTCT CTAAATGTTACCTTGCGGGCTCTGTTTCGTTGCGACTTTGACAACATTTT CAACAGAGACGACGGCGAGTTCCAGGTTCCCCCCAGCGTTGCCAAGGACA TGTTCTGCCGGGAAATCCAGAAGTACGCTCCCTTGCGAGAAGGCTTCTCA TGTCACGGCTCACCTGCTGAGATCGTCCGGCGTATGACGTCACTCTGCGC TGCCAAGGCGACGGTAGTGGTCATGATGACGGGTATAACACATGTAGAGA ACCTTCAGTCGTTAGTTGAAGACGAGGCAATGAACGTGAAGGTTATTGAG GTTGTTCATGACCCCCGTGCGATGCTGGTGTCGTGGATGAACGCTGTGCC GAAAAAACGGGGAGTGGATACAGACAGACGGGGCTTCTTTGATACCAGAG GCCTCGCCCTCACAGCCACCGAGATGAAGAGAATGTGCGTTGGCATGGTT ACGAACCTGATGTTCTGGTTGGCCAGCAGCCCGCCTTTCCGTACGAACTA CGCCGTGCTGAGGTACGAGGACCTTCGGGCCGACCCGCGGACCCTCGCCG ACAACATCCTCTCATTTCTCGGTCATCAGCCTGCTAGTGGGGCGGCCCTT CAGAGGGTGGTCGAAAGGATAGATAGAAATATAGAAGACATAAAAGACGG AAACGGAGAGTGGAGAAAGAACCTAACGGTTGCCGGGGCGACTAAGATAC AAGGAAGATGTTCAGAAGTGATAAGAAAGTTTGGGTATAAGTTTGTTAAG TCGGAGAGAGACTTGACTGACAATACCACCTCTCTTGTGGGAACCTTGCC GATAGAAGTTCCTGGATTTATGAGTAACAGAAAACGTCTTGTCTTGACGT CTCCGTTGTCTACAAACGACACAGTAATTCTACATAAGGCGAGCGTCCGA ACTGTCGTTCATTATCACTTAAAAGTCCCAGAAAACGGAACGCAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000012 | genome | Sc0000012:1676877..1680103 + |
Properties
Property Name | Value |
Transcript id | BL97279_cuf1 |
Biotype | protein_coding |
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