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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97279_cuf1 >transcript:BL97279_cuf1-protein ID=transcript:BL97279_cuf1-protein|Name=transcript:BL97279_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=457bp
MALWCTRRSLSAVLAVCCLLYVTTMFSLPGSRHARVNAVPTSSVRLHRVN
RAFLPPATTTQVPQALNTSVDRKAVLVLSQLRTDAEVVGEIFSQQEGLFY
FPEHLWSLLYPDPFPNSLLERGALSESDFYLNQTDRKRKWASLNVTLRAL
FRCDFDNIFNRDDGEFQVPPSVAKDMFCREIQKYAPLREGFSCHGSPAEI
VRRMTSLCAAKATVVVMMTGITHVENLQSLVEDEAMNVKVIEVVHDPRAM
LVSWMNAVPKKRGVDTDRRGFFDTRGLALTATEMKRMCVGMVTNLMFWLA
SSPPFRTNYAVLRYEDLRADPRTLADNILSFLGHQPASGAALQRVVERID
RNIEDIKDGNGEWRKNLTVAGATKIQGRCSEVIRKFGYKFVKSERDLTDN
TTSLVGTLPIEVPGFMSNRKRLVLTSPLSTNDTVILHKASVRTVVHYHLK
VPENGTQ Run BLAST on NCBI mRNA from alignment at Sc0000012:1676877..1680103+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97279_cuf1 ID=transcript:BL97279_cuf1|Name=transcript:BL97279_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3227bp|location=Sequence derived from alignment at Sc0000012:1676877..1680103+ (Branchiostoma lanceolatum)
AAGTCTGTGTACGAGGCTAGGGTTACGCAGAGTTTACAGAGTTCGGGGTT
CGCTGCTCGGCAGGCGTTCCTGTTTTTCCTGAGGCTCGGCGGTAAGTGGC
AAAACAGGTTTTGTACACGGTACGAGACGTCCAGAAAACGGGCAATGGGG
CTGTTTTCTAACGTCTGCACGGTGTTTTAGAGGTTCTCTGCTGATCATGA
TGTAACCACGTTTTACACAGGTACTGAAGATGGCTCTGTGGTGCACCAGA
CGTAGTCTGTCTGCCGTACTGGCGGTGTGTTGCCTCCTCTACGTGACTAC
CATGTTCAGCCTACCTGGGTCGCGCCATGCCCGTGTAAACGCCGTCCCCA
CTAGTAGCGTCAGACTTCACCGAGTCAACCGTGCCTTCTTACCGCCTGCT
ACGACGACTCAAGTTCCGCAGGCCCTCAACACGTCCGTGGACAGGAAGGC
TGTTTTAGTCCTGTCACAACTAAGAACAGATGCAGAGGTGGTGGGAGAGA
TTTTCAGCCAACAGGAGGGTTTGTTCTACTTCCCTGAACATCTCTGGTCG
CTCCTGTACCCTGACCCATTTCCCAACTCCCTGTTGGAAAGGGGGGCGTT
GTCAGAAAGCGACTTCTATCTGAACCAAACGGACAGAAAGAGAAAGTGGG
CGTCTCTAAATGTTACCTTGCGGGCTCTGTTTCGTTGCGACTTTGACAAC
ATTTTCAACAGAGACGACGGCGAGTTCCAGGTTCCCCCCAGCGTTGCCAA
GGACATGTTCTGCCGGGAAATCCAGAAGTACGCTCCCTTGCGAGAAGGCT
TCTCATGTCACGGCTCACCTGCTGAGATCGTCCGGCGTATGACGTCACTC
TGCGCTGCCAAGGCGACGGTAGTGGTCATGATGACGGGTATAACACATGT
AGAGAACCTTCAGTCGTTAGTTGAAGACGAGGCAATGAACGTGAAGGTTA
TTGAGGTTGTTCATGACCCCCGTGCGATGCTGGTGTCGTGGATGAACGCT
GTGCCGAAAAAACGGGGAGTGGATACAGACAGACGGGGCTTCTTTGATAC
CAGAGGGTGAGTTAAGACGTTTGTAACTTAAGACGATTCCGCGTCCATAC
ACAGTGCTTTCTTTTTAACTGTTGCGTTTCTTCGAAATACTCATACGTAT
ACGTTTTATGAATGTTTATGAATAATTGTTGTGTTTTTGACGGCGACTGT
ACGCAGCACATGAGGTCATGATGGTACACTTGTATTGAACGATTTCATCC
ATTCATTCATTCACTCACTTCTTCTTCTTCGTGTTTCCTTCCTCAGGAGA
GAATAGCTTCATCACACTTAGAATATAACAGTACTGATACATCTTTAAAA
TATAAAAACATATATACAAATGTTACGGTATATGACATCCGTCACATGGA
TATGGCACTCGTTGTTCTACTGTAGTGTTCAATTTCACTTCTGTCTCTCC
TCCCCTCATCGGGTATTATTTTCTTCAACTTATACGAGGGGATGTCAATA
TAAAACGCCTTTTTTACCATAGCAGGTTAAAAAAATCTCTTCTCGAGACT
TGGAAGCTTGTCGGAGGCAAACAGCAGTAAAATGGAAGTTTTATATTGAC
GTCCCCTCGTAACTTGGCATAACATAATCACCAGTCTTATTTCCTTTCAC
AATTTCCAAGTTGTGACCCTGACATACATTCTCTAGTGTCCTTTCCTGAC
TCTTGTTTCCAGGTATAGGTAAAGTCTCAGTTCCTCTCAGCTCCGTGTTT
TATTCTTTAAATGTTCGTTCGTTCATTCGTTCATTCCATCTTTCCCTCAC
TCATTCCTTAATTCATTTTCAAATTCATACATTATGAGAAACTTTTTATC
GTTGTGGTTCTCCGTGTGAATTTTCCAATGAGTCATTCATTCATTCATTC
GTTCATTCACTCATACATCATAGCAAACTCTTATCGTTGTTGTCCTCTGG
GTGCATTTTCCAATGATTTCCATCTTGAATTCTTTGTTCATAACCGTAGT
ACGCCATTTTCTTCGCATCTTCTGTAGCCTCGCCCTCACAGCCACCGAGA
TGAAGAGAATGTGCGTTGGCATGGTTACGAACCTGATGTTCTGGTTGGCC
AGCAGCCCGCCTTTCCGTACGAACTACGCCGTGCTGAGGTACGAGGACCT
TCGGGCCGACCCGCGGACCCTCGCCGACAACATCCTCTCATTTCTCGGTC
ATCAGCCTGCTAGTGGGGCGGCCCTTCAGAGGGTGGTCGAAAGGATAGAT
AGAAATATAGAAGACATAAAAGACGGAAACGGAGAGTGGAGAAAGAACCT
AACGGTTGCCGGGGCGACTAAGATACAAGGAAGATGTTCAGAAGTGATAA
GAAAGTTTGGGTATAAGTTTGTTAAGTCGGAGAGAGACTTGACTGACAAT
ACCACCTCTCTTGTGGGAACCTTGCCGATAGAAGTTCCTGGATTTATGAG
TAACAGAAAACGTCTTGTCTTGACGTCTCCGTTGTCTACAAACGACACAG
TAATTCTACATAAGGCGAGCGTCCGAACTGTCGTTCATTATCACTTAAAA
GTCCCAGAAAACGGAACGCAGTAGTATATACATGATCGAGTGACGTAGGT
TTTCAATCACGTGACGGTGACGTCATTCACTGTCCGCCATGTTGGTGGGT
TAGAGACGCATATTATGACGTCAGAGAGTTGTAAACATTCCATCATCATC
TACCTCAGAATGCCCTTTTCTTCACTTGCAATTGTACATACATGTAGTAG
AGTACGTTGCCACAAAAACATAAACATGATAACTCAAGAAGGGAATTTTT
GAAGAAGTGACCAAATACGTTTTTATCTCCGTGAAAACGGAGGTATATTG
TTTTTGGTCTGTGTTCGTCTTGGCCAGGTGGACTCATTCGGTCAGCCAAT
GAGAGAGCGCCTTTCAAATCACCCATGTATTTTCAAAACTGGAGCTGATT
TGTTGAAATATAGTCAATCCAATTACTCAGCCGATTTAAGGCCTGTGACT
GTAACTTTTGATGTATATATCTGTTTCTAACAAAATTTGCCCAGGTGATG
GAAATAACAAATATTTAGAATATCAAAACAAGAATTTTCAATCTCATTTA
TTTGAGGTGAAAAAATCACTTTTTGGTGAAAAATGTATATGTTATTAAAA
GGGCTTGTGCCTACTATGAAACGACTATTTAACAGAGTGATTTTTCCGGG
GTAATAGATAGTATCTCTGTGATGTCT Coding sequence (CDS) from alignment at Sc0000012:1676877..1680103+ >transcript:BL97279_cuf1 ID=transcript:BL97279_cuf1|Name=transcript:BL97279_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2748bp|location=Sequence derived from alignment at Sc0000012:1676877..1680103+ (Branchiostoma lanceolatum)
ATGGCTCTGTGGTGCACCAGACGTAGTCTGTCTGCCGTACTGGCGGTGTG
TTGCCTCCTCTACGTGACTACCATGTTCAGCCTACCTGGGTCGCGCCATG
CCCGTGTAAACGCCGTCCCCACTAGTAGCGTCAGACTTCACCGAGTCAAC
CGTGCCTTCTTACCGCCTGCTACGACGACTCAAGTTCCGCAGGCCCTCAA
CACGTCCGTGGACAGGAAGGCTGTTTTAGTCCTGTCACAACTAAGAACAG
ATGCAGAGGTGGTGGGAGAGATTTTCAGCCAACAGGAGGGTTTGTTCTAC
TTCCCTGAACATCTCTGGTCGCTCCTGTACCCTGACCCATTTCCCAACTC
CCTGTTGGAAAGGGGGGCGTTGTCAGAAAGCGACTTCTATCTGAACCAAA
CGGACAGAAAGAGAAAGTGGGCGTCTCTAAATGTTACCTTGCGGGCTCTG
TTTCGTTGCGACTTTGACAACATTTTCAACAGAGACGACGGCGAGTTCCA
GGTTCCCCCCAGCGTTGCCAAGGACATGTTCTGCCGGGAAATCCAGAAGT
ACGCTCCCTTGCGAGAAGGCTTCTCATGTCACGGCTCACCTGCTGAGATC
GTCCGGCGTATGACGTCACTCTGCGCTGCCAAGGCGACGGTAGTGGTCAT
GATGACGGGTATAACACATGTAGAGAACCTTCAGTCGTTAGTTGAAGACG
AGGCAATGAACGTGAAGGTTATTGAGGTTGTTCATGACCCCCGTGCGATG
CTGGTGTCGTGGATGAACGCTGTGCCGAAAAAACGGGGAGTGGATACAGA
CAGACGGGGCTTCTTTGATACCAGAGGCCTCGCCCTCACAGCCACCGAGA
TGAAGAGAATGTGCGTTGGCATGGTTACGAACCTGATGTTCTGGTTGGCC
AGCAGCCCGCCTTTCCGTACGAACTACGCCGTGCTGAGGTACGAGGACCT
TCGGGCCGACCCGCGGACCCTCGCCGACAACATCCTCTCATTTCTCGGTC
ATCAGCCTGCTAGTGGGGCGGCCCTTCAGAGGGTGGTCGAAAGGATAGAT
AGAAATATAGAAGACATAAAAGACGGAAACGGAGAGTGGAGAAAGAACCT
AACGGTTGCCGGGGCGACTAAGATACAAGGAAGATGTTCAGAAGTGATAA
GAAAGTTTGGGTATAAGTTTGTTAAGTCGGAGAGAGACTTGACTGACAAT
ACCACCTCTCTTGTGGGAACCTTGCCGATAGAAGTTCCTGGATTTATGAG
TAACAGAAAACGTCTTGTCTTGACGTCTCCGTTGTCTACAAACGACACAG
TAATTCTACATAAGGCGAGCGTCCGAACTGTCGTTCATTATCACTTAAAA
GTCCCAGAAAACGGAACGCAGTAGATGGCTCTGTGGTGCACCAGACGTAG
TCTGTCTGCCGTACTGGCGGTGTGTTGCCTCCTCTACGTGACTACCATGT
TCAGCCTACCTGGGTCGCGCCATGCCCGTGTAAACGCCGTCCCCACTAGT
AGCGTCAGACTTCACCGAGTCAACCGTGCCTTCTTACCGCCTGCTACGAC
GACTCAAGTTCCGCAGGCCCTCAACACGTCCGTGGACAGGAAGGCTGTTT
TAGTCCTGTCACAACTAAGAACAGATGCAGAGGTGGTGGGAGAGATTTTC
AGCCAACAGGAGGGTTTGTTCTACTTCCCTGAACATCTCTGGTCGCTCCT
GTACCCTGACCCATTTCCCAACTCCCTGTTGGAAAGGGGGGCGTTGTCAG
AAAGCGACTTCTATCTGAACCAAACGGACAGAAAGAGAAAGTGGGCGTCT
CTAAATGTTACCTTGCGGGCTCTGTTTCGTTGCGACTTTGACAACATTTT
CAACAGAGACGACGGCGAGTTCCAGGTTCCCCCCAGCGTTGCCAAGGACA
TGTTCTGCCGGGAAATCCAGAAGTACGCTCCCTTGCGAGAAGGCTTCTCA
TGTCACGGCTCACCTGCTGAGATCGTCCGGCGTATGACGTCACTCTGCGC
TGCCAAGGCGACGGTAGTGGTCATGATGACGGGTATAACACATGTAGAGA
ACCTTCAGTCGTTAGTTGAAGACGAGGCAATGAACGTGAAGGTTATTGAG
GTTGTTCATGACCCCCGTGCGATGCTGGTGTCGTGGATGAACGCTGTGCC
GAAAAAACGGGGAGTGGATACAGACAGACGGGGCTTCTTTGATACCAGAG
GCCTCGCCCTCACAGCCACCGAGATGAAGAGAATGTGCGTTGGCATGGTT
ACGAACCTGATGTTCTGGTTGGCCAGCAGCCCGCCTTTCCGTACGAACTA
CGCCGTGCTGAGGTACGAGGACCTTCGGGCCGACCCGCGGACCCTCGCCG
ACAACATCCTCTCATTTCTCGGTCATCAGCCTGCTAGTGGGGCGGCCCTT
CAGAGGGTGGTCGAAAGGATAGATAGAAATATAGAAGACATAAAAGACGG
AAACGGAGAGTGGAGAAAGAACCTAACGGTTGCCGGGGCGACTAAGATAC
AAGGAAGATGTTCAGAAGTGATAAGAAAGTTTGGGTATAAGTTTGTTAAG
TCGGAGAGAGACTTGACTGACAATACCACCTCTCTTGTGGGAACCTTGCC
GATAGAAGTTCCTGGATTTATGAGTAACAGAAAACGTCTTGTCTTGACGT
CTCCGTTGTCTACAAACGACACAGTAATTCTACATAAGGCGAGCGTCCGA
ACTGTCGTTCATTATCACTTAAAAGTCCCAGAAAACGGAACGCAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000012 | genome | Sc0000012:1676877..1680103 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97279_cuf1 |
| Biotype | protein_coding |
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