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transcript:BL97255_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97255_cuf1
Unique Nametranscript:BL97255_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97255_cuf1

>transcript:BL97255_cuf1-protein ID=transcript:BL97255_cuf1-protein|Name=transcript:BL97255_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=136bp
MTIVVMPRRWIVLAILLCFLGNGFLSCEGCLTTKGKEFVLSFLETFNNEP
RLYITSDSQTSVTIEAPADGWSTTVDVSPHEKVIVTLPRSSVEMSGSQPD
NKAVYVTSDKDISILAVSGEPGLITGTYRALPITFL
Run BLAST on NCBI

mRNA from alignment at Sc0000002:5298762..5300947-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97255_cuf1 ID=transcript:BL97255_cuf1|Name=transcript:BL97255_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2186bp|location=Sequence derived from alignment at Sc0000002:5298762..5300947- (Branchiostoma lanceolatum)
GTCAAATGTCACAAAATGTGCAACATTCGCACGAATGAGACAACCGACAT TGATGAAGAGCCTTTTCCGCCTGGTTTCTTCAGAGTCAGCCACACCCACA ATATTCTCTAGCGTACTGTTGTGTGATACGGCCGGATAAGAAGAACAATG TATAATGTTTAGTGCTTCGGTGCAGTTTTTTATGCGTGCTCAGGAGTAGA AATGACCATAGTAGTCATGCCGAGGCGTTGGATCGTGTTGGCAATTTTGC TCTGTTTCCTCGGAAACGGATTTCTTTCTTGCGAAGGTAGGTGTCAATAC TCTTTATCATGAAACGCTTTCATTGTGTATTTGGACACTTAGCCTTTAGT CATCTATCGGAAGGGGAGGGGTAAGATGTGTGGGGGAGAGAGATACAATC TCTTAATATGACAGGTCAATATAGCATGTAAATTAAATGGCATGGGTGTC GTGGGTGGGGGGATACCATTGCTGTCTGGGAGGAAAATCGTTCATCCTGT AGATAAGTTGATACGACTACAATATCTGAGGACAAATCGCAATCGACGTA CGATCGAAAACTCAGGGCTTTCTTGTGACGACGGTGATTCCAACTGTTTT GTTAGGGGAAAGGCTTTCATTGCTCCTTGTAGTCTTTTGGTTCTGTCGCA GCCTGCTTAAAAATATACGATATTGATAAAATGGTATGGCGGCTTACGGT GAATGTGATCACATGGTAATAAAAAAGACAGAAACGGGCTACTCACACGC AGGATTTCAGGTCGAAGGAAAACGTTTTCACAGTCAGACATTTGTGTCAA CCTTGAATCCATCCTCGATACATACTTTGTCTGTTAATATAGAGTCCGTT GAGCCTATAATTTTGCCTTCAACATTGATATGAAATGAGTCTATTCGACT CAAAAAGGTACTTGTAGTAAAATCCAGCAAATAAAGATTAACATGGCACA CCATATTATTGCTCATTCGTATGAAACTAACAGTAGTCACTATATTATTT TTCCTACATACCATAACAAGATAGACATTTATCTCATTTGTTTAGGTCGG AAATCATTTGAATTTTTCCCCCACATATTGTCTCGTGTTCATCATCGTTT ACAAAACCAGAAATCTGAATTTGTCCGTTTATTTCTTCAAGGATGCCTGA CCACGAAAGGCAAAGAGTTTGTGTTGTCCTTTCTGGAAACCTTCAATAAC GAGCCACGGCTCTACATAACAAGCGACTCTCAGACATCAGTGACCATAGA GGCCCCGGCGGATGGATGGAGCACAACCGTGGACGTGAGTCCACATGAGG TAAGACCTCTGGTGATGTTACCTCCATTTAAGATGGAGGGGTCTTTTTGG TGGGGCGGGGGGGGGTTGGGGTCTTGCTGTGTGTTTGTTTGTGTGTTTGT GCTTCAGGATATTTGTGGTCAGCATACTTTAAGAGCCTCTGGATGGATTA TGATGATATTTGGGATGTTGGTAGGTCTTGATAAGACAAGTCAAGGTAGA TTGTTGGACTCCTGACGACTTTCTCTGGTACTGTAGCAGAGCTTATGGTT TGTGTACCCTTTACTCTGGACATGCTTTGGTCTTGTTGAAGTTGAGTTGA GTTGAGTGAGGTTGAGTTGGAAAAACAGTAAGCATCTTTCCTCATTTTTA TAGCTTGATAAGTCATATTCTGCACCCTTTTCGAAGATTGCACATGACTG CTGACCACTGATTAAGTACAACAGAAATATACAAACACGTAAAGCCCCAT TTCCACTAAACGGCGACCGTTGTGTGCGGACCAAAACTGGATTTGTGTGA TTCTTGCTTTTGTGATTGAAATATGAAATAAAAGACAACAAGACACACAA AACTGTTCTTGGTCGCAGCCTCTAAGTAGAAAGGGATTACAACAGATCAG CCATAAAGCAGAAAATCGCATAGACCTATTTTCAATGATACCATTCAGTA TTGATGTATTACAGCAAAGGCTGTTATTGAAAATGTAACAAAGGAGGGTA TGTCACTTTACCAACACAGAAAGTGATAGTCACGTTGCCTCGGAGCTCGG TCGAGATGAGCGGCAGTCAACCCGACAACAAAGCTGTGTACGTCACTTCC GACAAAGACATCAGCATCCTGGCTGTTTCCGGCGAACCGGGGCTCATCAC AGGCACCTATAGGGCTTTGCCGATTACATTCCTCGG

Coding sequence (CDS) from alignment at Sc0000002:5298762..5300947-

>transcript:BL97255_cuf1 ID=transcript:BL97255_cuf1|Name=transcript:BL97255_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1224bp|location=Sequence derived from alignment at Sc0000002:5298762..5300947- (Branchiostoma lanceolatum)
ATGACCATAGTAGTCATGCCGAGGCGTTGGATCGTGTTGGCAATTTTGCT
CTGTTTCCTCGGAAACGGATTTCTTTCTTGCGAAGGATGCCTGACCACGA
AAGGCAAAGAGTTTGTGTTGTCCTTTCTGGAAACCTTCAATAACGAGCCA
CGGCTCTACATAACAAGCGACTCTCAGACATCAGTGACCATAGAGGCCCC
GGCGGATGGATGGAGCACAACCGTGGACGTGAGTCCACATGAGAAAGTGA
TAGTCACGTTGCCTCGGAGCTCGGTCGAGATGAGCGGCAGTCAACCCGAC
AACAAAGCTGTGTACGTCACTTCCGACAAAGACATCAGCATCCTGGCTGT
TTCCGGCGAACCGGGGCTCATCACAGGCACCTATAGGGCTTTGCCGATTA
CATTCCTCATGACCATAGTAGTCATGCCGAGGCGTTGGATCGTGTTGGCA
ATTTTGCTCTGTTTCCTCGGAAACGGATTTCTTTCTTGCGAAGGATGCCT
GACCACGAAAGGCAAAGAGTTTGTGTTGTCCTTTCTGGAAACCTTCAATA
ACGAGCCACGGCTCTACATAACAAGCGACTCTCAGACATCAGTGACCATA
GAGGCCCCGGCGGATGGATGGAGCACAACCGTGGACGTGAGTCCACATGA
GAAAGTGATAGTCACGTTGCCTCGGAGCTCGGTCGAGATGAGCGGCAGTC
AACCCGACAACAAAGCTGTGTACGTCACTTCCGACAAAGACATCAGCATC
CTGGCTGTTTCCGGCGAACCGGGGCTCATCACAGGCACCTATAGGGCTTT
GCCGATTACATTCCTCATGACCATAGTAGTCATGCCGAGGCGTTGGATCG
TGTTGGCAATTTTGCTCTGTTTCCTCGGAAACGGATTTCTTTCTTGCGAA
GGATGCCTGACCACGAAAGGCAAAGAGTTTGTGTTGTCCTTTCTGGAAAC
CTTCAATAACGAGCCACGGCTCTACATAACAAGCGACTCTCAGACATCAG
TGACCATAGAGGCCCCGGCGGATGGATGGAGCACAACCGTGGACGTGAGT
CCACATGAGAAAGTGATAGTCACGTTGCCTCGGAGCTCGGTCGAGATGAG
CGGCAGTCAACCCGACAACAAAGCTGTGTACGTCACTTCCGACAAAGACA
TCAGCATCCTGGCTGTTTCCGGCGAACCGGGGCTCATCACAGGCACCTAT
AGGGCTTTGCCGATTACATTCCTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97255gene:BL97255Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97255_cuf1transcript:BL97255_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97255_cuf1-E1BL97255_cuf1-E1-1564476830-36403Branchiostoma lanceolatumexon
BL97255_cuf1-E2BL97255_cuf1-E2-1564476830-36400Branchiostoma lanceolatumexon
BL97255_cuf1-E3BL97255_cuf1-E3-1564476830-36398Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:5298762..5300947 -
Properties
Property NameValue
Transcript idBL97255_cuf1
Biotypeprotein_coding