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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97235_cuf11 >transcript:BL97235_cuf11-protein ID=transcript:BL97235_cuf11-protein|Name=transcript:BL97235_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=191bp
MSEPNISAVLLEKGNLKLEERPIPKPGKNEVQIAMHSVGICGSDVHFWTD
GAIGPFVVKAPMVLGHEASGTVSELGEGVTHLKVGDRVAIEPGVPCRYCS
ACKGGRYNLCPDVKFCATPPVDGSLCRYYVHPADLCFKLPDNVSYEEGAL
LEPLSVGVHACRRSEVTIGSKVFICGAGPIGLVCLQVAKAR Run BLAST on NCBI mRNA from alignment at Sc0000002:4205060..4208306+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97235_cuf11 ID=transcript:BL97235_cuf11|Name=transcript:BL97235_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=3247bp|location=Sequence derived from alignment at Sc0000002:4205060..4208306+ (Branchiostoma lanceolatum)
CCGGTGACAAGGCAGACCCCAAACAACCGACGAGTACAAACTCGGTCATA
CGTTTACAGGATCCGCAACAACAACGACCGACGGTGTCTCAAAAATGAGC
GAACCTAATATCTCCGCGGTTCTTTTGGAAAAAGGCAACCTAAAACTGGT
GAGTTTGAATGATCTTAGAGTACAATAAACGATGTACAAAACGAAGTAGC
ATTTTATAAAGGGGCGGGGCAAAACGAGTTCGCTTGTTGTGCATGTATAT
GCTCTATGACTTACATAACACTCGAGTAGATACGCCAACAATAGCAACTT
TTTAAATCTCAGCCTTGTCTGTGACAATATCCACAATTGCTGCTGATAGT
CGGAATCCTTTGAAAATGTTAAATCTGTAAAGCAGAGTTGTTGTTCTCAG
TTACACTGAGTTGAGCAAAGTTCACGTCAAGTGACAAAGTGCAAAGTCTA
ACCTTTCGATGATTGGCTTTAATGTGTACTACTTTTATTCTGCAGGAAGA
GAGGCCTATTCCCAAACCTGGAAAGAATGGTGAGCAAAGTCAAGTATCAC
TCACTCACTCATGACCCATGGCCTCAGTGGTCGTAGCCGTAGAGGCGTCA
TGACAAGTATTCTCCAAGCAGAGGCTTCGATCGAGAGGGGTAGTTTTGTC
CGGGATTTCTAACGTTCCTCTCCTCTTAGAAATCCCGGACAAAACTACCC
CTCTCGATCGAAGCCTCTGCTTGGAGAATAATAACAAGTATACGTCTGCA
GTAAGAATTAGTTTCAAAATTTTATCCAGGTTCTTGGGTAACTATTTTTT
GGCGTACTTCTACAATAATTTAAAAAGCTATGGATGTTTTTCTTGGCACT
GCAGCAGAGCATCCGGTCTTTGCAATAATGGCCGCTTCTGCCCTTGACTG
CCCCCCTTTAAAGGAGTCCTTAAGTCCAGAAGGGGGAGTTATTTTCCAAT
AGATGATAATTTCAGGAAGTGAAAATGAATACTTTTTACAGTATACGATA
AAGTACCCACTAGTCCCGTGCGCATCAAAAAGCATTCAGTATTTTACCGA
ATTCCCCAGGTGACCCTCTATTTTCTGATTGATTATATTAAACAACCTCA
GCCTGTGGCTTATTACAATGTGCCTGACAAGGCCTGACAAAAGTTGGGTT
ACAAACCATTTTATTATATACTTGACTCAATCTACAGAGGTCCAAATCGC
GATGCACTCGGTTGGCATCTGCGGCTCTGATGTCCACTTCTGGACGGACG
GCGCGATCGGACCGTTCGTGGTCAAGGCCCCCATGGTCCTGGGACACGAG
GCCAGCGGCACGGTGTCCGAGCTGGGGGAGGGCGTCACTCACCTGAAAGT
CGGTAAGGAACCTTTTTTGCTGAATAGACCTCTATCCAGTTACGGCGGCC
ATTTTGAATTTCCAGGGGTCAGCTGGGGGTCATGCATCAAAGTGAGGCTC
AGGGTGTACCGGGTTAAGCCGTTCTATGGTATAACATAGGTATGCCGTAA
CTGGAAAGAGGTCTATTGATGTACTTTGCCAAAAGGGGTATGTTTTCGGG
AGCGTTCGTGTTTTTCCCATTGACATAAGCTTAATTCAGAATCCTCTCCG
AGTACTATAACCATCTGTCTATATAGACTAGATTTGATCGGTCCCTGAGT
GGTCTTCCTCTACAGTTTTGACTGTACTTTTCTCTACCTTCTTCTTGTCT
ATATCTACCCGTACATATTGTAAGGGATTACATTCGTAATTTCTGATGGT
GGCGTAAAGCCATCGGTCCCGTATATGAGGGAGCCTCAGGCATAGATCTA
AAGCGTACAACATCTGCACATAAAAGAACCCAACACACTTATCGAGAAGA
GGCTTTTTGGCTGAAGTGCGAGCCGTAGCGAAGCCGCATTGCACTGTAGC
TACTACCAGTCACTTGAAAAGTATTACACCTCACCTCAGTGGAAAATGAC
TGCCTTACCTTTACCTGTACCTGCCCAGGTGATCGTGTAGCGATCGAGCC
AGGTGTGCCGTGCAGGTATTGTTCCGCCTGTAAGGGAGGCAGGTACAACC
TGTGCCCGGATGTGAAGTTCTGTGCTACGCCGCCTGTCGACGGCTCGCTG
TGCAGGTACTACGTACACCCGGCCGACCTATGCTTCAAGTAAGTTCACAC
TACTACAAAAACAACTTGTTTGTTTGTTTGTTTGTTTTACTTCTTACTTC
TTTTCCTTGCTTAGGTTCATTTTCAATAATCTCTTAGCTGTCTCGAGTAC
TCTATTGATAAAACCGATATAGTTATGAGGCGACTATGGAAAACTCTGGA
CTTCCGCATAGTACAAAAATAAATTGTTTGTTTTACTTCACAATCCTATC
CTTGCTTAGGGTCATCTTCAATAATTTCTGAGCTATTTTCAAGTTAAGTA
CTCTATGGAGAAAACATGATGCACATGTGAGAAACTCTGGACTTGGGTCA
AATTTTATTTTCTTGCCACCTGTCCTGGACCATTCTGGCACATTTGACCT
ATAAGTGTGGACATGGCCAGCATCCAAAAATTAATTCCAACTGCGGAACT
GTGACAAAACTTTCCTGTAGACGCACACCATTAAGCACAAACAAAAACAA
ACGAACAAACAAGCTAATGCATCGCAAACAAACAAACCGACCACAGAACC
TCCTTTTTCACGGAGGTACATAAAAGTGCACGTCTTATTCTAGCTAATGC
CTTCATACCAAAGTAAAATAAAAATATGTTTCAGACTCCCCGACAACGTG
AGTTACGAGGAAGGTGCTCTGCTTGAACCTCTTTCTGTGGGTGTGCACGC
CTGCAGGAGGTCAGAGGTCACTATTGGCAGCAAGGTGTTCATCTGTGGTG
CAGGTACTGTGTCTAATAATGTTTGTGTTGTTAGCTGAGATTGACTTATA
TCTCTCCATATGATCGTACTATGCTGGTGGGAACGTAAATATTTATTGCA
ATCTCAGTACAAAGTCCTTTTGTAGGGCTTACAAATGTATGTACATATAC
TTTGTGAGAAACGAAAACCTTGTTCTGAGTTTTATGGATGGCATTTTGTT
TCTTTTATTTCTGTGTACTGCAATATGATGAAACCAGCTCGCCCGACGTA
CCTGAGAGGCTAGTGTGTTATGCCGAAGGGCAGCTATATAGGGATTTATA
GGTATGATAGATACAGATCCAGATGCAGGTATAATCTGTTGCTGTTCTGT
TTCAGGTCCCATAGGGCTGGTGTGCCTCCAAGTGGCCAAGGCCAGGG Coding sequence (CDS) from alignment at Sc0000002:4205060..4208306+ >transcript:BL97235_cuf11 ID=transcript:BL97235_cuf11|Name=transcript:BL97235_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=3438bp|location=Sequence derived from alignment at Sc0000002:4205060..4208306+ (Branchiostoma lanceolatum)
ATGAGCGAACCTAATATCTCCGCGGTTCTTTTGGAAAAAGGCAACCTAAA
ACTGGAAGAGAGGCCTATTCCCAAACCTGGAAAGAATGAGGTCCAAATCG
CGATGCACTCGGTTGGCATCTGCGGCTCTGATGTCCACTTCTGGACGGAC
GGCGCGATCGGACCGTTCGTGGTCAAGGCCCCCATGGTCCTGGGACACGA
GGCCAGCGGCACGGTGTCCGAGCTGGGGGAGGGCGTCACTCACCTGAAAG
TCGGTGATCGTGTAGCGATCGAGCCAGGTGTGCCGTGCAGGTATTGTTCC
GCCTGTAAGGGAGGCAGGTACAACCTGTGCCCGGATGTGAAGTTCTGTGC
TACGCCGCCTGTCGACGGCTCGCTGTGCAGGTACTACGTACACCCGGCCG
ACCTATGCTTCAAACTCCCCGACAACGTGAGTTACGAGGAAGGTGCTCTG
CTTGAACCTCTTTCTGTGGGTGTGCACGCCTGCAGGAGGTCAGAGGTCAC
TATTGGCAGCAAGGTGTTCATCTGTGGTGCAGGTCCCATAGGGCTGGTGT
GCCTCCAAGTGGCCAAGGCCAGGATGAGCGAACCTAATATCTCCGCGGTT
CTTTTGGAAAAAGGCAACCTAAAACTGGAAGAGAGGCCTATTCCCAAACC
TGGAAAGAATGAGGTCCAAATCGCGATGCACTCGGTTGGCATCTGCGGCT
CTGATGTCCACTTCTGGACGGACGGCGCGATCGGACCGTTCGTGGTCAAG
GCCCCCATGGTCCTGGGACACGAGGCCAGCGGCACGGTGTCCGAGCTGGG
GGAGGGCGTCACTCACCTGAAAGTCGGTGATCGTGTAGCGATCGAGCCAG
GTGTGCCGTGCAGGTATTGTTCCGCCTGTAAGGGAGGCAGGTACAACCTG
TGCCCGGATGTGAAGTTCTGTGCTACGCCGCCTGTCGACGGCTCGCTGTG
CAGGTACTACGTACACCCGGCCGACCTATGCTTCAAACTCCCCGACAACG
TGAGTTACGAGGAAGGTGCTCTGCTTGAACCTCTTTCTGTGGGTGTGCAC
GCCTGCAGGAGGTCAGAGGTCACTATTGGCAGCAAGGTGTTCATCTGTGG
TGCAGGTCCCATAGGGCTGGTGTGCCTCCAAGTGGCCAAGGCCAGGATGA
GCGAACCTAATATCTCCGCGGTTCTTTTGGAAAAAGGCAACCTAAAACTG
GAAGAGAGGCCTATTCCCAAACCTGGAAAGAATGAGGTCCAAATCGCGAT
GCACTCGGTTGGCATCTGCGGCTCTGATGTCCACTTCTGGACGGACGGCG
CGATCGGACCGTTCGTGGTCAAGGCCCCCATGGTCCTGGGACACGAGGCC
AGCGGCACGGTGTCCGAGCTGGGGGAGGGCGTCACTCACCTGAAAGTCGG
TGATCGTGTAGCGATCGAGCCAGGTGTGCCGTGCAGGTATTGTTCCGCCT
GTAAGGGAGGCAGGTACAACCTGTGCCCGGATGTGAAGTTCTGTGCTACG
CCGCCTGTCGACGGCTCGCTGTGCAGGTACTACGTACACCCGGCCGACCT
ATGCTTCAAACTCCCCGACAACGTGAGTTACGAGGAAGGTGCTCTGCTTG
AACCTCTTTCTGTGGGTGTGCACGCCTGCAGGAGGTCAGAGGTCACTATT
GGCAGCAAGGTGTTCATCTGTGGTGCAGGTCCCATAGGGCTGGTGTGCCT
CCAAGTGGCCAAGGCCAGGATGAGCGAACCTAATATCTCCGCGGTTCTTT
TGGAAAAAGGCAACCTAAAACTGGAAGAGAGGCCTATTCCCAAACCTGGA
AAGAATGAGGTCCAAATCGCGATGCACTCGGTTGGCATCTGCGGCTCTGA
TGTCCACTTCTGGACGGACGGCGCGATCGGACCGTTCGTGGTCAAGGCCC
CCATGGTCCTGGGACACGAGGCCAGCGGCACGGTGTCCGAGCTGGGGGAG
GGCGTCACTCACCTGAAAGTCGGTGATCGTGTAGCGATCGAGCCAGGTGT
GCCGTGCAGGTATTGTTCCGCCTGTAAGGGAGGCAGGTACAACCTGTGCC
CGGATGTGAAGTTCTGTGCTACGCCGCCTGTCGACGGCTCGCTGTGCAGG
TACTACGTACACCCGGCCGACCTATGCTTCAAACTCCCCGACAACGTGAG
TTACGAGGAAGGTGCTCTGCTTGAACCTCTTTCTGTGGGTGTGCACGCCT
GCAGGAGGTCAGAGGTCACTATTGGCAGCAAGGTGTTCATCTGTGGTGCA
GGTCCCATAGGGCTGGTGTGCCTCCAAGTGGCCAAGGCCAGGATGAGCGA
ACCTAATATCTCCGCGGTTCTTTTGGAAAAAGGCAACCTAAAACTGGAAG
AGAGGCCTATTCCCAAACCTGGAAAGAATGAGGTCCAAATCGCGATGCAC
TCGGTTGGCATCTGCGGCTCTGATGTCCACTTCTGGACGGACGGCGCGAT
CGGACCGTTCGTGGTCAAGGCCCCCATGGTCCTGGGACACGAGGCCAGCG
GCACGGTGTCCGAGCTGGGGGAGGGCGTCACTCACCTGAAAGTCGGTGAT
CGTGTAGCGATCGAGCCAGGTGTGCCGTGCAGGTATTGTTCCGCCTGTAA
GGGAGGCAGGTACAACCTGTGCCCGGATGTGAAGTTCTGTGCTACGCCGC
CTGTCGACGGCTCGCTGTGCAGGTACTACGTACACCCGGCCGACCTATGC
TTCAAACTCCCCGACAACGTGAGTTACGAGGAAGGTGCTCTGCTTGAACC
TCTTTCTGTGGGTGTGCACGCCTGCAGGAGGTCAGAGGTCACTATTGGCA
GCAAGGTGTTCATCTGTGGTGCAGGTCCCATAGGGCTGGTGTGCCTCCAA
GTGGCCAAGGCCAGGATGAGCGAACCTAATATCTCCGCGGTTCTTTTGGA
AAAAGGCAACCTAAAACTGGAAGAGAGGCCTATTCCCAAACCTGGAAAGA
ATGAGGTCCAAATCGCGATGCACTCGGTTGGCATCTGCGGCTCTGATGTC
CACTTCTGGACGGACGGCGCGATCGGACCGTTCGTGGTCAAGGCCCCCAT
GGTCCTGGGACACGAGGCCAGCGGCACGGTGTCCGAGCTGGGGGAGGGCG
TCACTCACCTGAAAGTCGGTGATCGTGTAGCGATCGAGCCAGGTGTGCCG
TGCAGGTATTGTTCCGCCTGTAAGGGAGGCAGGTACAACCTGTGCCCGGA
TGTGAAGTTCTGTGCTACGCCGCCTGTCGACGGCTCGCTGTGCAGGTACT
ACGTACACCCGGCCGACCTATGCTTCAAACTCCCCGACAACGTGAGTTAC
GAGGAAGGTGCTCTGCTTGAACCTCTTTCTGTGGGTGTGCACGCCTGCAG
GAGGTCAGAGGTCACTATTGGCAGCAAGGTGTTCATCTGTGGTGCAGGTC
CCATAGGGCTGGTGTGCCTCCAAGTGGCCAAGGCCAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:4205060..4208306 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97235_cuf11 |
| Biotype | protein_coding |
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