transcript:BL97235_cuf11 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97235_cuf11
Unique Nametranscript:BL97235_cuf11
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97235_cuf11

>transcript:BL97235_cuf11-protein ID=transcript:BL97235_cuf11-protein|Name=transcript:BL97235_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=191bp
MSEPNISAVLLEKGNLKLEERPIPKPGKNEVQIAMHSVGICGSDVHFWTD
GAIGPFVVKAPMVLGHEASGTVSELGEGVTHLKVGDRVAIEPGVPCRYCS
ACKGGRYNLCPDVKFCATPPVDGSLCRYYVHPADLCFKLPDNVSYEEGAL
LEPLSVGVHACRRSEVTIGSKVFICGAGPIGLVCLQVAKAR
Run BLAST on NCBI

mRNA from alignment at Sc0000002:4205060..4208306+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97235_cuf11 ID=transcript:BL97235_cuf11|Name=transcript:BL97235_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=3247bp|location=Sequence derived from alignment at Sc0000002:4205060..4208306+ (Branchiostoma lanceolatum)
CCGGTGACAAGGCAGACCCCAAACAACCGACGAGTACAAACTCGGTCATA CGTTTACAGGATCCGCAACAACAACGACCGACGGTGTCTCAAAAATGAGC GAACCTAATATCTCCGCGGTTCTTTTGGAAAAAGGCAACCTAAAACTGGT GAGTTTGAATGATCTTAGAGTACAATAAACGATGTACAAAACGAAGTAGC ATTTTATAAAGGGGCGGGGCAAAACGAGTTCGCTTGTTGTGCATGTATAT GCTCTATGACTTACATAACACTCGAGTAGATACGCCAACAATAGCAACTT TTTAAATCTCAGCCTTGTCTGTGACAATATCCACAATTGCTGCTGATAGT CGGAATCCTTTGAAAATGTTAAATCTGTAAAGCAGAGTTGTTGTTCTCAG TTACACTGAGTTGAGCAAAGTTCACGTCAAGTGACAAAGTGCAAAGTCTA ACCTTTCGATGATTGGCTTTAATGTGTACTACTTTTATTCTGCAGGAAGA GAGGCCTATTCCCAAACCTGGAAAGAATGGTGAGCAAAGTCAAGTATCAC TCACTCACTCATGACCCATGGCCTCAGTGGTCGTAGCCGTAGAGGCGTCA TGACAAGTATTCTCCAAGCAGAGGCTTCGATCGAGAGGGGTAGTTTTGTC CGGGATTTCTAACGTTCCTCTCCTCTTAGAAATCCCGGACAAAACTACCC CTCTCGATCGAAGCCTCTGCTTGGAGAATAATAACAAGTATACGTCTGCA GTAAGAATTAGTTTCAAAATTTTATCCAGGTTCTTGGGTAACTATTTTTT GGCGTACTTCTACAATAATTTAAAAAGCTATGGATGTTTTTCTTGGCACT GCAGCAGAGCATCCGGTCTTTGCAATAATGGCCGCTTCTGCCCTTGACTG CCCCCCTTTAAAGGAGTCCTTAAGTCCAGAAGGGGGAGTTATTTTCCAAT AGATGATAATTTCAGGAAGTGAAAATGAATACTTTTTACAGTATACGATA AAGTACCCACTAGTCCCGTGCGCATCAAAAAGCATTCAGTATTTTACCGA ATTCCCCAGGTGACCCTCTATTTTCTGATTGATTATATTAAACAACCTCA GCCTGTGGCTTATTACAATGTGCCTGACAAGGCCTGACAAAAGTTGGGTT ACAAACCATTTTATTATATACTTGACTCAATCTACAGAGGTCCAAATCGC GATGCACTCGGTTGGCATCTGCGGCTCTGATGTCCACTTCTGGACGGACG GCGCGATCGGACCGTTCGTGGTCAAGGCCCCCATGGTCCTGGGACACGAG GCCAGCGGCACGGTGTCCGAGCTGGGGGAGGGCGTCACTCACCTGAAAGT CGGTAAGGAACCTTTTTTGCTGAATAGACCTCTATCCAGTTACGGCGGCC ATTTTGAATTTCCAGGGGTCAGCTGGGGGTCATGCATCAAAGTGAGGCTC AGGGTGTACCGGGTTAAGCCGTTCTATGGTATAACATAGGTATGCCGTAA CTGGAAAGAGGTCTATTGATGTACTTTGCCAAAAGGGGTATGTTTTCGGG AGCGTTCGTGTTTTTCCCATTGACATAAGCTTAATTCAGAATCCTCTCCG AGTACTATAACCATCTGTCTATATAGACTAGATTTGATCGGTCCCTGAGT GGTCTTCCTCTACAGTTTTGACTGTACTTTTCTCTACCTTCTTCTTGTCT ATATCTACCCGTACATATTGTAAGGGATTACATTCGTAATTTCTGATGGT GGCGTAAAGCCATCGGTCCCGTATATGAGGGAGCCTCAGGCATAGATCTA AAGCGTACAACATCTGCACATAAAAGAACCCAACACACTTATCGAGAAGA GGCTTTTTGGCTGAAGTGCGAGCCGTAGCGAAGCCGCATTGCACTGTAGC TACTACCAGTCACTTGAAAAGTATTACACCTCACCTCAGTGGAAAATGAC TGCCTTACCTTTACCTGTACCTGCCCAGGTGATCGTGTAGCGATCGAGCC AGGTGTGCCGTGCAGGTATTGTTCCGCCTGTAAGGGAGGCAGGTACAACC TGTGCCCGGATGTGAAGTTCTGTGCTACGCCGCCTGTCGACGGCTCGCTG TGCAGGTACTACGTACACCCGGCCGACCTATGCTTCAAGTAAGTTCACAC TACTACAAAAACAACTTGTTTGTTTGTTTGTTTGTTTTACTTCTTACTTC TTTTCCTTGCTTAGGTTCATTTTCAATAATCTCTTAGCTGTCTCGAGTAC TCTATTGATAAAACCGATATAGTTATGAGGCGACTATGGAAAACTCTGGA CTTCCGCATAGTACAAAAATAAATTGTTTGTTTTACTTCACAATCCTATC CTTGCTTAGGGTCATCTTCAATAATTTCTGAGCTATTTTCAAGTTAAGTA CTCTATGGAGAAAACATGATGCACATGTGAGAAACTCTGGACTTGGGTCA AATTTTATTTTCTTGCCACCTGTCCTGGACCATTCTGGCACATTTGACCT ATAAGTGTGGACATGGCCAGCATCCAAAAATTAATTCCAACTGCGGAACT GTGACAAAACTTTCCTGTAGACGCACACCATTAAGCACAAACAAAAACAA ACGAACAAACAAGCTAATGCATCGCAAACAAACAAACCGACCACAGAACC TCCTTTTTCACGGAGGTACATAAAAGTGCACGTCTTATTCTAGCTAATGC CTTCATACCAAAGTAAAATAAAAATATGTTTCAGACTCCCCGACAACGTG AGTTACGAGGAAGGTGCTCTGCTTGAACCTCTTTCTGTGGGTGTGCACGC CTGCAGGAGGTCAGAGGTCACTATTGGCAGCAAGGTGTTCATCTGTGGTG CAGGTACTGTGTCTAATAATGTTTGTGTTGTTAGCTGAGATTGACTTATA TCTCTCCATATGATCGTACTATGCTGGTGGGAACGTAAATATTTATTGCA ATCTCAGTACAAAGTCCTTTTGTAGGGCTTACAAATGTATGTACATATAC TTTGTGAGAAACGAAAACCTTGTTCTGAGTTTTATGGATGGCATTTTGTT TCTTTTATTTCTGTGTACTGCAATATGATGAAACCAGCTCGCCCGACGTA CCTGAGAGGCTAGTGTGTTATGCCGAAGGGCAGCTATATAGGGATTTATA GGTATGATAGATACAGATCCAGATGCAGGTATAATCTGTTGCTGTTCTGT TTCAGGTCCCATAGGGCTGGTGTGCCTCCAAGTGGCCAAGGCCAGGG

Coding sequence (CDS) from alignment at Sc0000002:4205060..4208306+

>transcript:BL97235_cuf11 ID=transcript:BL97235_cuf11|Name=transcript:BL97235_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=3438bp|location=Sequence derived from alignment at Sc0000002:4205060..4208306+ (Branchiostoma lanceolatum)
ATGAGCGAACCTAATATCTCCGCGGTTCTTTTGGAAAAAGGCAACCTAAA
ACTGGAAGAGAGGCCTATTCCCAAACCTGGAAAGAATGAGGTCCAAATCG
CGATGCACTCGGTTGGCATCTGCGGCTCTGATGTCCACTTCTGGACGGAC
GGCGCGATCGGACCGTTCGTGGTCAAGGCCCCCATGGTCCTGGGACACGA
GGCCAGCGGCACGGTGTCCGAGCTGGGGGAGGGCGTCACTCACCTGAAAG
TCGGTGATCGTGTAGCGATCGAGCCAGGTGTGCCGTGCAGGTATTGTTCC
GCCTGTAAGGGAGGCAGGTACAACCTGTGCCCGGATGTGAAGTTCTGTGC
TACGCCGCCTGTCGACGGCTCGCTGTGCAGGTACTACGTACACCCGGCCG
ACCTATGCTTCAAACTCCCCGACAACGTGAGTTACGAGGAAGGTGCTCTG
CTTGAACCTCTTTCTGTGGGTGTGCACGCCTGCAGGAGGTCAGAGGTCAC
TATTGGCAGCAAGGTGTTCATCTGTGGTGCAGGTCCCATAGGGCTGGTGT
GCCTCCAAGTGGCCAAGGCCAGGATGAGCGAACCTAATATCTCCGCGGTT
CTTTTGGAAAAAGGCAACCTAAAACTGGAAGAGAGGCCTATTCCCAAACC
TGGAAAGAATGAGGTCCAAATCGCGATGCACTCGGTTGGCATCTGCGGCT
CTGATGTCCACTTCTGGACGGACGGCGCGATCGGACCGTTCGTGGTCAAG
GCCCCCATGGTCCTGGGACACGAGGCCAGCGGCACGGTGTCCGAGCTGGG
GGAGGGCGTCACTCACCTGAAAGTCGGTGATCGTGTAGCGATCGAGCCAG
GTGTGCCGTGCAGGTATTGTTCCGCCTGTAAGGGAGGCAGGTACAACCTG
TGCCCGGATGTGAAGTTCTGTGCTACGCCGCCTGTCGACGGCTCGCTGTG
CAGGTACTACGTACACCCGGCCGACCTATGCTTCAAACTCCCCGACAACG
TGAGTTACGAGGAAGGTGCTCTGCTTGAACCTCTTTCTGTGGGTGTGCAC
GCCTGCAGGAGGTCAGAGGTCACTATTGGCAGCAAGGTGTTCATCTGTGG
TGCAGGTCCCATAGGGCTGGTGTGCCTCCAAGTGGCCAAGGCCAGGATGA
GCGAACCTAATATCTCCGCGGTTCTTTTGGAAAAAGGCAACCTAAAACTG
GAAGAGAGGCCTATTCCCAAACCTGGAAAGAATGAGGTCCAAATCGCGAT
GCACTCGGTTGGCATCTGCGGCTCTGATGTCCACTTCTGGACGGACGGCG
CGATCGGACCGTTCGTGGTCAAGGCCCCCATGGTCCTGGGACACGAGGCC
AGCGGCACGGTGTCCGAGCTGGGGGAGGGCGTCACTCACCTGAAAGTCGG
TGATCGTGTAGCGATCGAGCCAGGTGTGCCGTGCAGGTATTGTTCCGCCT
GTAAGGGAGGCAGGTACAACCTGTGCCCGGATGTGAAGTTCTGTGCTACG
CCGCCTGTCGACGGCTCGCTGTGCAGGTACTACGTACACCCGGCCGACCT
ATGCTTCAAACTCCCCGACAACGTGAGTTACGAGGAAGGTGCTCTGCTTG
AACCTCTTTCTGTGGGTGTGCACGCCTGCAGGAGGTCAGAGGTCACTATT
GGCAGCAAGGTGTTCATCTGTGGTGCAGGTCCCATAGGGCTGGTGTGCCT
CCAAGTGGCCAAGGCCAGGATGAGCGAACCTAATATCTCCGCGGTTCTTT
TGGAAAAAGGCAACCTAAAACTGGAAGAGAGGCCTATTCCCAAACCTGGA
AAGAATGAGGTCCAAATCGCGATGCACTCGGTTGGCATCTGCGGCTCTGA
TGTCCACTTCTGGACGGACGGCGCGATCGGACCGTTCGTGGTCAAGGCCC
CCATGGTCCTGGGACACGAGGCCAGCGGCACGGTGTCCGAGCTGGGGGAG
GGCGTCACTCACCTGAAAGTCGGTGATCGTGTAGCGATCGAGCCAGGTGT
GCCGTGCAGGTATTGTTCCGCCTGTAAGGGAGGCAGGTACAACCTGTGCC
CGGATGTGAAGTTCTGTGCTACGCCGCCTGTCGACGGCTCGCTGTGCAGG
TACTACGTACACCCGGCCGACCTATGCTTCAAACTCCCCGACAACGTGAG
TTACGAGGAAGGTGCTCTGCTTGAACCTCTTTCTGTGGGTGTGCACGCCT
GCAGGAGGTCAGAGGTCACTATTGGCAGCAAGGTGTTCATCTGTGGTGCA
GGTCCCATAGGGCTGGTGTGCCTCCAAGTGGCCAAGGCCAGGATGAGCGA
ACCTAATATCTCCGCGGTTCTTTTGGAAAAAGGCAACCTAAAACTGGAAG
AGAGGCCTATTCCCAAACCTGGAAAGAATGAGGTCCAAATCGCGATGCAC
TCGGTTGGCATCTGCGGCTCTGATGTCCACTTCTGGACGGACGGCGCGAT
CGGACCGTTCGTGGTCAAGGCCCCCATGGTCCTGGGACACGAGGCCAGCG
GCACGGTGTCCGAGCTGGGGGAGGGCGTCACTCACCTGAAAGTCGGTGAT
CGTGTAGCGATCGAGCCAGGTGTGCCGTGCAGGTATTGTTCCGCCTGTAA
GGGAGGCAGGTACAACCTGTGCCCGGATGTGAAGTTCTGTGCTACGCCGC
CTGTCGACGGCTCGCTGTGCAGGTACTACGTACACCCGGCCGACCTATGC
TTCAAACTCCCCGACAACGTGAGTTACGAGGAAGGTGCTCTGCTTGAACC
TCTTTCTGTGGGTGTGCACGCCTGCAGGAGGTCAGAGGTCACTATTGGCA
GCAAGGTGTTCATCTGTGGTGCAGGTCCCATAGGGCTGGTGTGCCTCCAA
GTGGCCAAGGCCAGGATGAGCGAACCTAATATCTCCGCGGTTCTTTTGGA
AAAAGGCAACCTAAAACTGGAAGAGAGGCCTATTCCCAAACCTGGAAAGA
ATGAGGTCCAAATCGCGATGCACTCGGTTGGCATCTGCGGCTCTGATGTC
CACTTCTGGACGGACGGCGCGATCGGACCGTTCGTGGTCAAGGCCCCCAT
GGTCCTGGGACACGAGGCCAGCGGCACGGTGTCCGAGCTGGGGGAGGGCG
TCACTCACCTGAAAGTCGGTGATCGTGTAGCGATCGAGCCAGGTGTGCCG
TGCAGGTATTGTTCCGCCTGTAAGGGAGGCAGGTACAACCTGTGCCCGGA
TGTGAAGTTCTGTGCTACGCCGCCTGTCGACGGCTCGCTGTGCAGGTACT
ACGTACACCCGGCCGACCTATGCTTCAAACTCCCCGACAACGTGAGTTAC
GAGGAAGGTGCTCTGCTTGAACCTCTTTCTGTGGGTGTGCACGCCTGCAG
GAGGTCAGAGGTCACTATTGGCAGCAAGGTGTTCATCTGTGGTGCAGGTC
CCATAGGGCTGGTGTGCCTCCAAGTGGCCAAGGCCAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97235gene:BL97235Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97235_cuf11transcript:BL97235_cuf11-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97235_cuf11-E1BL97235_cuf11-E1-1564476830-35647Branchiostoma lanceolatumexon
BL97235_cuf11-E2BL97235_cuf11-E2-1564476830-35649Branchiostoma lanceolatumexon
BL97235_cuf11-E3BL97235_cuf11-E3-1564476830-35651Branchiostoma lanceolatumexon
BL97235_cuf11-E4BL97235_cuf11-E4-1564476830-35653Branchiostoma lanceolatumexon
BL97235_cuf11-E5BL97235_cuf11-E5-1564476830-35655Branchiostoma lanceolatumexon
BL97235_cuf11-E6BL97235_cuf11-E6-1564476830-35658Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:4205060..4208306 +
Properties
Property NameValue
Transcript idBL97235_cuf11
Biotypeprotein_coding