transcript:BL97198_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97198_cuf1
Unique Nametranscript:BL97198_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97198_cuf1

>transcript:BL97198_cuf1-protein ID=transcript:BL97198_cuf1-protein|Name=transcript:BL97198_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=261bp
MKMDGLCAVYCVVLIAIVAVEDTMALSGPLGSVCGSQCCLGWDQVGDTCI
AHCYHPCVHGTCVDTNVCRCDPGWGGGDCSHDIDECWYETHICHHNCHNH
EGCYTCSCDDGFQLINSTHCVNSTTANMSSTTTEMASLCTTAATSTVANP
QQRTTRATASGLRTTPTAPTTTTATTTKAQQTQRTSTNTGSGLRTTTTAD
ITTSRPPQRTTRTTASGLHPRSTDTTTSTTTADDITTSRPPRRTTRTTAS
GLHPRSTDATT
Run BLAST on NCBI

mRNA from alignment at Sc0000066:1402755..1404765+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97198_cuf1 ID=transcript:BL97198_cuf1|Name=transcript:BL97198_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2011bp|location=Sequence derived from alignment at Sc0000066:1402755..1404765+ (Branchiostoma lanceolatum)
GCTTCTGCGCCACATGAGGAAGTAACCGTTTACACTCGCGGCCACACAAA
ACACAGGCAAACACCTCCCAGTCGCGGTTGGACTGTATTCCGGTCTAGGA
GGACATTTTTCCTTGTAGAAGAGGGAGAGATAGCGACATCATGAAGATGG
ACGGCCTCTGTGCTGTTTACTGTGTCGTTCTCATTGCCATCGTCGCCGTT
GAGGACACGATGGCGCTGTCTGGGTGAGTTTACGTGTACAATGTTGTGGA
GTGCTCTCTCGGAGTGCCTTGTGTACAGTAGTATTTGCTACGTGTCTCTA
AAACCATGTGTTGCTGTTCTCTAGCTACTAGGTACTAAGTGGTATCCCTA
GAACTCCAACCGTGTGGTCAGTGAAAAAGGACAAGGTAGCGTTAACTGTG
CATATCGTACTATTTAAGTGTCGGTAAGTTGGCCGATAGCATGCCATAGA
AACTGAAGCGTACTTTATTGATAGATTCTGTACTAAACCGCTGCCTAATA
TTCCAGCCCACTAGGCAGCGTATGCGGCAGTCAGTGTTGCCTTGGATGGG
ACCAAGTTGGTGACACCTGCATAGGTAAGTCTCACAATTCGTTGTCACGA
AGTTTTGTTTACAGAACTTAACGGGTTCAAGACTGGGTTAAACCCCAAAC
ACGCCATTCCTATTTCTGTCTATCCTTTTCGACCAATTCCTCTTGTATCT
ATGTACTACGTATATGCATCTACAATTCGTTTCTGCTAACTAACAACCAA
TATGCACGTAACGTGTTGCTCCTTAATTCAGCCCACTGCTACCACCCATG
TGTACACGGCACCTGTGTGGACACGAACGTCTGTCGGTGTGATCCTGGTT
GGGGAGGAGGGGACTGTAGTCACGGTAAGAAATCTTCTTACGGTCACTTA
ACACTTTCAAGCAAGCGAAGACATGAGCAAAGGTTCCGGGTTTCTATAGG
GGGAAACGTCTTCAAGAGGAAGTCTTCCTTCTTGACGCGGAGTCTTTATT
TGAGGGGTATTGTCTCCCTTCAAGAACAAATAAAGCCTTTTAACCGCAGT
GAGGAAGTCTTCCTGAAACCAATTACGTTGTTTTGTTGTGTTGCTAGACG
TTCTAGATGACAGTTAAAAGCCAACTTCCCCTTTATTGGACACTTTGTTT
CTGGACACCCTGTCCTTTGTCAAATATCATTCTGCACTTGATAATAAAAT
TCAAAGTACTATGCATGGTCAAACGAACATGAAAGGGCGCAAATTACATC
TAATCTTGTTACGAGGACATCTCTAATTCAACCATACCGTGATTTAAGAA
ATGTAGGCAGTGAAGTAAATAGCCTGGCCGTAAAAGACGAACAGACGATT
ACCTACTTTGTCCTCCATTTTGACAGAAAATAATATCTAGATAGACGAAC
AGTCACGGATGAAATTGTTGAGTACAGCAATGCTCAACCAGCCTTTGTTT
AAAAAAAAAACACTTTCCCCAGATATCGACGAGTGCTGGTACGAGACTCA
CATCTGTCATCACAACTGTCATAACCACGAGGGTTGCTACACGTGTTCCT
GTGACGACGGTTTCCAGCTCATCAATTCTACACACTGTGTCAACTCTACC
ACTGCCAACATGAGCAGTACGACCACGGAGATGGCCTCACTCTGCACCAC
AGCCGCAACATCAACTGTGGCGAACCCACAACAGAGAACCACCAGGGCAA
CAGCTAGTGGTTTACGCACAACTCCCACAGCCCCAACAACGACAACAGCC
ACCACTACAAAAGCACAACAAACACAGAGGACCAGCACGAACACAGGTAG
CGGTTTACGCACAACAACTACAGCCGACATTACAACATCAAGACCACCAC
AGAGAACCACTAGGACCACAGCTAGCGGCTTGCATCCTCGTTCGACAGAT
ACGACAACATCGACAACAACTGCAGACGACATTACAACATCAAGACCACC
ACGGAGAACTACTAGGACCACAGCTAGCGGTTTGCATCCTCGTTCGACAG
ATGCGACAACA

Coding sequence (CDS) from alignment at Sc0000066:1402755..1404765+

>transcript:BL97198_cuf1 ID=transcript:BL97198_cuf1|Name=transcript:BL97198_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3132bp|location=Sequence derived from alignment at Sc0000066:1402755..1404765+ (Branchiostoma lanceolatum)
ATGAAGATGGACGGCCTCTGTGCTGTTTACTGTGTCGTTCTCATTGCCAT
CGTCGCCGTTGAGGACACGATGGCGCTGTCTGGCCCACTAGGCAGCGTAT
GCGGCAGTCAGTGTTGCCTTGGATGGGACCAAGTTGGTGACACCTGCATA
GCCCACTGCTACCACCCATGTGTACACGGCACCTGTGTGGACACGAACGT
CTGTCGGTGTGATCCTGGTTGGGGAGGAGGGGACTGTAGTCACGATATCG
ACGAGTGCTGGTACGAGACTCACATCTGTCATCACAACTGTCATAACCAC
GAGGGTTGCTACACGTGTTCCTGTGACGACGGTTTCCAGCTCATCAATTC
TACACACTGTGTCAACTCTACCACTGCCAACATGAGCAGTACGACCACGG
AGATGGCCTCACTCTGCACCACAGCCGCAACATCAACTGTGGCGAACCCA
CAACAGAGAACCACCAGGGCAACAGCTAGTGGTTTACGCACAACTCCCAC
AGCCCCAACAACGACAACAGCCACCACTACAAAAGCACAACAAACACAGA
GGACCAGCACGAACACAGGTAGCGGTTTACGCACAACAACTACAGCCGAC
ATTACAACATCAAGACCACCACAGAGAACCACTAGGACCACAGCTAGCGG
CTTGCATCCTCGTTCGACAGATACGACAACATCGACAACAACTGCAGACG
ACATTACAACATCAAGACCACCACGGAGAACTACTAGGACCACAGCTAGC
GGTTTGCATCCTCGTTCGACAGATGCGACAACAATGAAGATGGACGGCCT
CTGTGCTGTTTACTGTGTCGTTCTCATTGCCATCGTCGCCGTTGAGGACA
CGATGGCGCTGTCTGGCCCACTAGGCAGCGTATGCGGCAGTCAGTGTTGC
CTTGGATGGGACCAAGTTGGTGACACCTGCATAGCCCACTGCTACCACCC
ATGTGTACACGGCACCTGTGTGGACACGAACGTCTGTCGGTGTGATCCTG
GTTGGGGAGGAGGGGACTGTAGTCACGATATCGACGAGTGCTGGTACGAG
ACTCACATCTGTCATCACAACTGTCATAACCACGAGGGTTGCTACACGTG
TTCCTGTGACGACGGTTTCCAGCTCATCAATTCTACACACTGTGTCAACT
CTACCACTGCCAACATGAGCAGTACGACCACGGAGATGGCCTCACTCTGC
ACCACAGCCGCAACATCAACTGTGGCGAACCCACAACAGAGAACCACCAG
GGCAACAGCTAGTGGTTTACGCACAACTCCCACAGCCCCAACAACGACAA
CAGCCACCACTACAAAAGCACAACAAACACAGAGGACCAGCACGAACACA
GGTAGCGGTTTACGCACAACAACTACAGCCGACATTACAACATCAAGACC
ACCACAGAGAACCACTAGGACCACAGCTAGCGGCTTGCATCCTCGTTCGA
CAGATACGACAACATCGACAACAACTGCAGACGACATTACAACATCAAGA
CCACCACGGAGAACTACTAGGACCACAGCTAGCGGTTTGCATCCTCGTTC
GACAGATGCGACAACAATGAAGATGGACGGCCTCTGTGCTGTTTACTGTG
TCGTTCTCATTGCCATCGTCGCCGTTGAGGACACGATGGCGCTGTCTGGC
CCACTAGGCAGCGTATGCGGCAGTCAGTGTTGCCTTGGATGGGACCAAGT
TGGTGACACCTGCATAGCCCACTGCTACCACCCATGTGTACACGGCACCT
GTGTGGACACGAACGTCTGTCGGTGTGATCCTGGTTGGGGAGGAGGGGAC
TGTAGTCACGATATCGACGAGTGCTGGTACGAGACTCACATCTGTCATCA
CAACTGTCATAACCACGAGGGTTGCTACACGTGTTCCTGTGACGACGGTT
TCCAGCTCATCAATTCTACACACTGTGTCAACTCTACCACTGCCAACATG
AGCAGTACGACCACGGAGATGGCCTCACTCTGCACCACAGCCGCAACATC
AACTGTGGCGAACCCACAACAGAGAACCACCAGGGCAACAGCTAGTGGTT
TACGCACAACTCCCACAGCCCCAACAACGACAACAGCCACCACTACAAAA
GCACAACAAACACAGAGGACCAGCACGAACACAGGTAGCGGTTTACGCAC
AACAACTACAGCCGACATTACAACATCAAGACCACCACAGAGAACCACTA
GGACCACAGCTAGCGGCTTGCATCCTCGTTCGACAGATACGACAACATCG
ACAACAACTGCAGACGACATTACAACATCAAGACCACCACGGAGAACTAC
TAGGACCACAGCTAGCGGTTTGCATCCTCGTTCGACAGATGCGACAACAA
TGAAGATGGACGGCCTCTGTGCTGTTTACTGTGTCGTTCTCATTGCCATC
GTCGCCGTTGAGGACACGATGGCGCTGTCTGGCCCACTAGGCAGCGTATG
CGGCAGTCAGTGTTGCCTTGGATGGGACCAAGTTGGTGACACCTGCATAG
CCCACTGCTACCACCCATGTGTACACGGCACCTGTGTGGACACGAACGTC
TGTCGGTGTGATCCTGGTTGGGGAGGAGGGGACTGTAGTCACGATATCGA
CGAGTGCTGGTACGAGACTCACATCTGTCATCACAACTGTCATAACCACG
AGGGTTGCTACACGTGTTCCTGTGACGACGGTTTCCAGCTCATCAATTCT
ACACACTGTGTCAACTCTACCACTGCCAACATGAGCAGTACGACCACGGA
GATGGCCTCACTCTGCACCACAGCCGCAACATCAACTGTGGCGAACCCAC
AACAGAGAACCACCAGGGCAACAGCTAGTGGTTTACGCACAACTCCCACA
GCCCCAACAACGACAACAGCCACCACTACAAAAGCACAACAAACACAGAG
GACCAGCACGAACACAGGTAGCGGTTTACGCACAACAACTACAGCCGACA
TTACAACATCAAGACCACCACAGAGAACCACTAGGACCACAGCTAGCGGC
TTGCATCCTCGTTCGACAGATACGACAACATCGACAACAACTGCAGACGA
CATTACAACATCAAGACCACCACGGAGAACTACTAGGACCACAGCTAGCG
GTTTGCATCCTCGTTCGACAGATGCGACAACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97198gene:BL97198Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97198_cuf1transcript:BL97198_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97198_cuf1-E1BL97198_cuf1-E1-1564476830-257078Branchiostoma lanceolatumexon
BL97198_cuf1-E2BL97198_cuf1-E2-1564476830-257080Branchiostoma lanceolatumexon
BL97198_cuf1-E3BL97198_cuf1-E3-1564476830-257082Branchiostoma lanceolatumexon
BL97198_cuf1-E4BL97198_cuf1-E4-1564476830-257084Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000066genomeSc0000066:1402755..1404765 +
Properties
Property NameValue
Transcript idBL97198_cuf1
Biotypeprotein_coding