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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97191_cuf2 >transcript:BL97191_cuf2-protein ID=transcript:BL97191_cuf2-protein|Name=transcript:BL97191_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=294bp
IPADFNLGGRLAMLPNQLGQMTFEEIQNSSVMELLSNPASNAEKQHPEFR
EFASTVIFPQCAASDENSTSCSSSQHADNTTSCMNTQLLPCRSWCEEVNK
ADGRMKNRFPTCDLFPSPPHRCWNPEPETKSNKGCFHGNGMNYRGTWSTT
KSRAECANWSAAQAGFYAIKYPWANMDNNYCRNPTGLERPFCLVEDGSQE
DCDVTACGAVGCWDLGPPNYGNRSPMKRFYNVGERVVYTCNRGYSIKSGH
PGEVRCTKGGLWEYDKPSCSENIEQKLAEELLDVYSPSQAPVTE Run BLAST on NCBI mRNA from alignment at Sc0000069:1135078..1140280- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97191_cuf2 ID=transcript:BL97191_cuf2|Name=transcript:BL97191_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5203bp|location=Sequence derived from alignment at Sc0000069:1135078..1140280- (Branchiostoma lanceolatum)
GATTCCTGCGGATTTCAACCTCGGCGGTAGACTTGCGATGCTGCCAAATC
AGCTGGGCCAGATGACGTTTGAGGAGATACAGAATTCCTCTGTCATGGAG
CTGCTCAGCAATCCTGCCAGCAACGCAGAGAAACAGCATCCTGAGTTCCG
GGAATTCGCGTCTACGGTCATCTTCCCGCAATGTGCTGCCTCCGACGAGA
ACAGCACTTCCTGCTCTTCGTCTCAACATGCAGACAACACGACCTCATGC
ATGTGAGTAAAACATGCTGCAGTTGATTTTGATATTGTTACCGTGATTCT
GATAATTTACATTAGATTCACTTTTATTTCTTAAGATATATCTCAAAACA
TGCTTCATTTGATTTTGAGTGGACATTTGTTGCAATAATTTTGGTTCTCT
ACATTAAAGTCACTTTTATTTCTTAATATTGACTGGTTAACAACAGCCAC
CTGGCCATCTATACTCAGGATTGCGACATAAACTATAAGCACTTATTTGT
TGTTTTATTTTACAGGTCTAAGCATATGTAGTAGCTGTTGTAACTGGTAA
CAAACCTCACATTGTATGTCCAGTAGTTTTTCTAAATATGCCGCTGTTTT
GTAGGAACACACAGCTGCTGCCGTGCCGTTCGTGGTGCGAGGAAGTCAAC
AAGGCTGATGGCCGGATGAAGAACCGGTTCCCTACCTGTGACCTGTTCCC
GTCACCACCACACCGCTGTTGGAACCCTGAACCAGAGACCAAGAGCAACA
AAGGTATATTCAATTTCTTAACTGAAAGTAGCATTTGAGATTGTCACTTT
AATTTTAACATTTCTGTATCAATTCCCAATGGATCAGAGAACTGATTGTA
ATGTAAAATGCTGCATGATTTGGTATTTTTTTCTGCCAGCTGTTGCAGCT
TTTGGTTCTTGTATCTCATTGTCATGTTAGAAGTTTGATTTCACCATAAG
CATTCAGGGGTGCATCATTTAGTAAATCTATATGCTAAATTGCTGATCAG
AAATATGGCTGTTTCTTTTCCTCAGGTTGCTTCCACGGCAATGGCATGAA
CTACCGTGGTACATGGAGTACAACCAAGTCTAGGGCGGAGTGTGCAAATT
GGTCCGCTGCCCAGGCTGGTTTCTACGCGATCAAGTATCCGTGGGCCAAC
ATGGACAACAACTACTGTCGCANTGAAATGTAGACTGAGACAACTGATAA
GAGATCACATTGTATGTATGGTCGATGTACATAATATAAGTTTTGCCCAG
GAAAGGCCACAGTAGGAGATACTTCCTTATTGCTGTACCCAGGGCACAAC
CATCTCATCTTTAATGTTTTTTTTTATAGGTTGTCCTCCTGGCTACGCTC
CGTTCGGGGGTTCGTGCTTCAAGGCGTACAACCAAGACAAAACCTACAAC
CAGGCCAGGCAGGTGTGTGCAGCGGACGGAGGGCTTCTGGCCATGCCGAA
GGACAAAGACGCGGACGACTTCTTGAGGAACCTGAAGAACGGCGTAGATC
CCAACTCCCCTTTCTGGCTCGGCCTGAGCAGTGAGAAAGGCAAGGCTGGT
TGGGTGTGGGAAGATGGGACTCCACACGACACAGCCGCAGACCGGCCGTA
TGGTGGATGGCAGCTGGGGGAACCCAGCAATAAAGGAGGAGGAGGAGGAG
TCTGCGCAAACCACTTCGAAACCGGATGGAACGACGCGCCCTGCTCGTCT
GCGCAGAAGTTCATCTGCCAGCTGAATGATGGTATGTCATGTAACATTGT
ATAGTTACACAAACATGCACAAAACACGTACATACAATGTCTATATTAGA
AGCAGTTAGATGTTAATATTTTGGTGCAAAATCCACTGTTTTGCCAATGA
AAAAAAAAAGTTTCACCAAAAGGGCTCAGATACCGGGAACGTCCATGAAA
TGCTTTTTTGTGTACTGTTCATTCTGGTTTAAAGCTTATAATTAGACGAC
GTGCTTTTTTATAGATGGAGCGTAACAAAATGAAGAACACAAGTAACAGT
CTGAGATTGTTTCTCTGCACAGCAGTCCACTGCCCCCTGGGGTACCTCCG
GTGCGGACACGGACATGGCTGCATCCTGGCCTGGAAGCGCTGTGACGGGC
GGACGGACTGTTCAGACGGGAGTGACGAGGAAGGTTGTGGTGAGTTGGGC
TCGCATCTTAACCGTACGTGCGGTTGCTATATATACAACATATTAGTATC
TTTAGTAGGAGTCATCATCTTTCCACTGTTGGCAAAGACACTAGCTTGGA
AAAGTTATTGATATTCATTATTTCTCCAGCCCTTGTCTAGCTAATGCTAA
TCCACCTCACTCAACTTTTGTTGTAACGGTGTAATCATTAACCTCCCTTG
GCTTTTTAGCCTTTTCTTATCATGACCATGTTCCTATCATAACCGTTAAT
GTGCTCTTGATCTATCAAATCAAGGGCACAAATAAAACACTTGCTTTGAG
GCTGCTGCTACTTGGTGCAGGAAAGACCAGGTTACTCAGTTCTACCCTGG
GAAAATTTGCTCAATAAAGTCAAAACTGTATTTTTCTTACAAACATTCTG
TTATGGTTTATCATATGTATTGCATGTTGGTCAGATTTTTTAATCAGTGA
TTATTTCATGTTGTTTGTCAGTGCTTCCTGTCAATGTTAACGAAGCATGT
GATGTCTAATCAACGTCTGTATTGTTGTTATTTTCAGAGTGTCGGCCGAT
TCCTGCGGATTTCAACCTCGGCGGTAGACTTGCGATGCTGCCAAATCAGC
TGGGCCAGATGACGTTTGAGGAGATACAGAATTCCTCTGTCATGGAGCTG
CTCAGCAATCCTGCCAGCAACGCAGAGAAACAGCATCCTGAGTTCCGGGA
ATTCGCGTCTACGGTCATCTTCCCGCAATGTGCTGCCTCCGACGAGAACA
GCACTTCCTGCTCTTCGTCTCAACATGCAGACAACACGACCTCATGCATG
TGAGTAAAACATGCTGCAGTTGATTTTGATATTGTTACCGTGATTCTGAT
AATTTACATTAGATTCACTTTTATTTCTTAAGATATATCTCAAAACATGC
TTCATTTGATTTTGAGTGGACATTTGTTGCAATAATTTTGGTTCTCTACA
TTAAAGTCACTTTTATTTCTTAATATTGACTGGTTAACAACAGCCACCTG
GCCATCTATACTCAGGATTGCGACATAAACTATAAGCACTTATTTGTTGT
TTTATTTTACAGGTCTAAGCATATGTAGTAGCTGTTGTAACTGGTAACAA
ACCTCACATTGTATGTCCAGTAGTTTTTCTAAATATGCCGCTGTTTTGTA
GGAACACACAGCTGCTGCCGTGCCGTTCGTGGTGCGAGGAAGTCAACAAG
GCTGATGGCCGGATGAAGAACCGGTTCCCTACCTGTGACCTGTTCCCGTC
ACCACCACACCGCTGTTGGAACCCTGAACCAGAGACCAAGAGCAACAAAG
GTATATTCAATTTCTTAACTGAAAGTAGCATTTGAGATTGTCACTTTAAT
TTTAACATTTCTGTATCAATTCCCAATGGATCAGAGAACTGATTGTAATG
TAAAATGCTGCATGATTTGGTATTTTTTTCTGCCAGCTGTTGCAGCTTTT
GGTTCTTGTATCTCATTGTCATGTTAGAAGTTTGATTTCACCATAAGCAT
TCAGGGGTGCATCATTTAGTAAATCTATATGCTAAATTGCTGATCAGAAA
TATGGCTGTTTCTTTTCCTCAGGTTGCTTCCACGGCAATGGCATGAACTA
CCGTGGTACATGGAGTACAACCAAGTCTAGGGCGGAGTGTGCAAATTGGT
CCGCTGCCCAGGCTGGTTTCTACGCGATCAAGTATCCGTGGGCCAACATG
GACAACAACTACTGTCGCAACCCTACCGGGCTGGAGCGGCCATTTTGCTT
GGTGGAAGATGGCAGCCAGGAGGATTGTGACGTCACTGCGTGTGGTAAGT
CGTCTTGTCAAGATGGGAGACATATTTTGAACCATACCATATTTCTTAGG
CAACCCTAACTCATTTCCGTTTCATTTTGTAATATATTGAACTATAATAA
CTTGAATGAATGGGCACAGACCATATGCCAACTTTCACTTTGTTATGTAT
TTTTGTGATACCATGTATCTGTAAGGATTGCACGCTATGTTGTAGATTTA
TTTGGACTTTATCATGTAATCTGTATCTTTGTAATGACACTTATGTTTTT
TACATGAATAGAGAAAGGTTCGAAAGAACAAAAACATTGTCATGGACTTC
ATCAGATGATGATTTTCACTACCTTTGGTAACTTATCACACCCAGGTGCC
GTCGGCTGCTGGGACTTGGGTCCACCAAACTACGGCAACAGAAGCCCCAT
GAAGAGGTTCTACAACGTGGGAGAAAGGGTTGTGTACACCTGTAATAGGG
GGTACTCCATTAAGTCAGGGCATCCCGGTGAAGTGAGGTGCACCAAAGGA
GGCCTCTGGGAATATGACAAGCCCAGCTGTTCAGGTGATTGTGATAGGCT
CTTTGTTGTGAATAAGCTTGCAGTGTGTACTTAGAATGTGTATCCTATTC
CAATAAGTTGACGCAGTTCAGAATAGAAATGTGATAAGTTTGATATTGAA
AAAAAACGAACTCTAAGAACTGGTGCAATAGTTCAAAGTACTATTTTTTT
CAAGGTTAGGTTTTGTTCTAAAGATATTTTTTAACTCAATGCAAGAAAGA
AGTACAAACGAGCTGCTAGGGGGCCCAAACCTACATTACTTCATTATTAC
ATCACAAGCTATCAGCCACCCAAAAATCAAGACCATAGCACGTCCAGATC
AAAAGATACAAAAACGGAAGTTCTGCTGCAGTTCCAAGGTCACATACCAG
GGGGCCCAAAATCTACCTTGAACTTTGGCTTCACAATACCCGCCCACATA
CCAAATATCATTGTAATCCATCAAGAGGTTCTTGAGTTATGCTGACTTGA
ATAGTGCGGAAACACAAACAGACAGACAAACAGACAAACAAACAGACAAA
CAGACAGACACACCCAAAACTATATCTCCATTTTTCACGGAGATAGATAT
TACCATGATTAGTCTGCAGTATATTGTGTTGATCTTAGTTGTGTTCCTGA
TTGATAAGCATGTACTTTTCTCCTCCACAGAGAATATCGAGCAAAAGCTA
GCAGAGGAGCTGCTGGATGTGTACAGTCCGTCCCAGGCACCTGTGACTGA
GAC Coding sequence (CDS) from alignment at Sc0000069:1135078..1140280- >transcript:BL97191_cuf2 ID=transcript:BL97191_cuf2|Name=transcript:BL97191_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4410bp|location=Sequence derived from alignment at Sc0000069:1135078..1140280- (Branchiostoma lanceolatum)
ATTCCTGCGGATTTCAACCTCGGCGGTAGACTTGCGATGCTGCCAAATCA
GCTGGGCCAGATGACGTTTGAGGAGATACAGAATTCCTCTGTCATGGAGC
TGCTCAGCAATCCTGCCAGCAACGCAGAGAAACAGCATCCTGAGTTCCGG
GAATTCGCGTCTACGGTCATCTTCCCGCAATGTGCTGCCTCCGACGAGAA
CAGCACTTCCTGCTCTTCGTCTCAACATGCAGACAACACGACCTCATGCA
TGAACACACAGCTGCTGCCGTGCCGTTCGTGGTGCGAGGAAGTCAACAAG
GCTGATGGCCGGATGAAGAACCGGTTCCCTACCTGTGACCTGTTCCCGTC
ACCACCACACCGCTGTTGGAACCCTGAACCAGAGACCAAGAGCAACAAAG
GTTGCTTCCACGGCAATGGCATGAACTACCGTGGTACATGGAGTACAACC
AAGTCTAGGGCGGAGTGTGCAAATTGGTCCGCTGCCCAGGCTGGTTTCTA
CGCGATCAAGTATCCGTGGGCCAACATGGACAACAACTACTGTCGCAACC
CTACCGGGCTGGAGCGGCCATTTTGCTTGGTGGAAGATGGCAGCCAGGAG
GATTGTGACGTCACTGCGTGTGGTGCCGTCGGCTGCTGGGACTTGGGTCC
ACCAAACTACGGCAACAGAAGCCCCATGAAGAGGTTCTACAACGTGGGAG
AAAGGGTTGTGTACACCTGTAATAGGGGGTACTCCATTAAGTCAGGGCAT
CCCGGTGAAGTGAGGTGCACCAAAGGAGGCCTCTGGGAATATGACAAGCC
CAGCTGTTCAGAGAATATCGAGCAAAAGCTAGCAGAGGAGCTGCTGGATG
TGTACAGTCCGTCCCAGGCACCTGTGACTGAGATTCCTGCGGATTTCAAC
CTCGGCGGTAGACTTGCGATGCTGCCAAATCAGCTGGGCCAGATGACGTT
TGAGGAGATACAGAATTCCTCTGTCATGGAGCTGCTCAGCAATCCTGCCA
GCAACGCAGAGAAACAGCATCCTGAGTTCCGGGAATTCGCGTCTACGGTC
ATCTTCCCGCAATGTGCTGCCTCCGACGAGAACAGCACTTCCTGCTCTTC
GTCTCAACATGCAGACAACACGACCTCATGCATGAACACACAGCTGCTGC
CGTGCCGTTCGTGGTGCGAGGAAGTCAACAAGGCTGATGGCCGGATGAAG
AACCGGTTCCCTACCTGTGACCTGTTCCCGTCACCACCACACCGCTGTTG
GAACCCTGAACCAGAGACCAAGAGCAACAAAGGTTGCTTCCACGGCAATG
GCATGAACTACCGTGGTACATGGAGTACAACCAAGTCTAGGGCGGAGTGT
GCAAATTGGTCCGCTGCCCAGGCTGGTTTCTACGCGATCAAGTATCCGTG
GGCCAACATGGACAACAACTACTGTCGCAACCCTACCGGGCTGGAGCGGC
CATTTTGCTTGGTGGAAGATGGCAGCCAGGAGGATTGTGACGTCACTGCG
TGTGGTGCCGTCGGCTGCTGGGACTTGGGTCCACCAAACTACGGCAACAG
AAGCCCCATGAAGAGGTTCTACAACGTGGGAGAAAGGGTTGTGTACACCT
GTAATAGGGGGTACTCCATTAAGTCAGGGCATCCCGGTGAAGTGAGGTGC
ACCAAAGGAGGCCTCTGGGAATATGACAAGCCCAGCTGTTCAGAGAATAT
CGAGCAAAAGCTAGCAGAGGAGCTGCTGGATGTGTACAGTCCGTCCCAGG
CACCTGTGACTGAGATTCCTGCGGATTTCAACCTCGGCGGTAGACTTGCG
ATGCTGCCAAATCAGCTGGGCCAGATGACGTTTGAGGAGATACAGAATTC
CTCTGTCATGGAGCTGCTCAGCAATCCTGCCAGCAACGCAGAGAAACAGC
ATCCTGAGTTCCGGGAATTCGCGTCTACGGTCATCTTCCCGCAATGTGCT
GCCTCCGACGAGAACAGCACTTCCTGCTCTTCGTCTCAACATGCAGACAA
CACGACCTCATGCATGAACACACAGCTGCTGCCGTGCCGTTCGTGGTGCG
AGGAAGTCAACAAGGCTGATGGCCGGATGAAGAACCGGTTCCCTACCTGT
GACCTGTTCCCGTCACCACCACACCGCTGTTGGAACCCTGAACCAGAGAC
CAAGAGCAACAAAGGTTGCTTCCACGGCAATGGCATGAACTACCGTGGTA
CATGGAGTACAACCAAGTCTAGGGCGGAGTGTGCAAATTGGTCCGCTGCC
CAGGCTGGTTTCTACGCGATCAAGTATCCGTGGGCCAACATGGACAACAA
CTACTGTCGCAACCCTACCGGGCTGGAGCGGCCATTTTGCTTGGTGGAAG
ATGGCAGCCAGGAGGATTGTGACGTCACTGCGTGTGGTGCCGTCGGCTGC
TGGGACTTGGGTCCACCAAACTACGGCAACAGAAGCCCCATGAAGAGGTT
CTACAACGTGGGAGAAAGGGTTGTGTACACCTGTAATAGGGGGTACTCCA
TTAAGTCAGGGCATCCCGGTGAAGTGAGGTGCACCAAAGGAGGCCTCTGG
GAATATGACAAGCCCAGCTGTTCAGAGAATATCGAGCAAAAGCTAGCAGA
GGAGCTGCTGGATGTGTACAGTCCGTCCCAGGCACCTGTGACTGAGATTC
CTGCGGATTTCAACCTCGGCGGTAGACTTGCGATGCTGCCAAATCAGCTG
GGCCAGATGACGTTTGAGGAGATACAGAATTCCTCTGTCATGGAGCTGCT
CAGCAATCCTGCCAGCAACGCAGAGAAACAGCATCCTGAGTTCCGGGAAT
TCGCGTCTACGGTCATCTTCCCGCAATGTGCTGCCTCCGACGAGAACAGC
ACTTCCTGCTCTTCGTCTCAACATGCAGACAACACGACCTCATGCATGAA
CACACAGCTGCTGCCGTGCCGTTCGTGGTGCGAGGAAGTCAACAAGGCTG
ATGGCCGGATGAAGAACCGGTTCCCTACCTGTGACCTGTTCCCGTCACCA
CCACACCGCTGTTGGAACCCTGAACCAGAGACCAAGAGCAACAAAGGTTG
CTTCCACGGCAATGGCATGAACTACCGTGGTACATGGAGTACAACCAAGT
CTAGGGCGGAGTGTGCAAATTGGTCCGCTGCCCAGGCTGGTTTCTACGCG
ATCAAGTATCCGTGGGCCAACATGGACAACAACTACTGTCGCAACCCTAC
CGGGCTGGAGCGGCCATTTTGCTTGGTGGAAGATGGCAGCCAGGAGGATT
GTGACGTCACTGCGTGTGGTGCCGTCGGCTGCTGGGACTTGGGTCCACCA
AACTACGGCAACAGAAGCCCCATGAAGAGGTTCTACAACGTGGGAGAAAG
GGTTGTGTACACCTGTAATAGGGGGTACTCCATTAAGTCAGGGCATCCCG
GTGAAGTGAGGTGCACCAAAGGAGGCCTCTGGGAATATGACAAGCCCAGC
TGTTCAGAGAATATCGAGCAAAAGCTAGCAGAGGAGCTGCTGGATGTGTA
CAGTCCGTCCCAGGCACCTGTGACTGAGATTCCTGCGGATTTCAACCTCG
GCGGTAGACTTGCGATGCTGCCAAATCAGCTGGGCCAGATGACGTTTGAG
GAGATACAGAATTCCTCTGTCATGGAGCTGCTCAGCAATCCTGCCAGCAA
CGCAGAGAAACAGCATCCTGAGTTCCGGGAATTCGCGTCTACGGTCATCT
TCCCGCAATGTGCTGCCTCCGACGAGAACAGCACTTCCTGCTCTTCGTCT
CAACATGCAGACAACACGACCTCATGCATGAACACACAGCTGCTGCCGTG
CCGTTCGTGGTGCGAGGAAGTCAACAAGGCTGATGGCCGGATGAAGAACC
GGTTCCCTACCTGTGACCTGTTCCCGTCACCACCACACCGCTGTTGGAAC
CCTGAACCAGAGACCAAGAGCAACAAAGGTTGCTTCCACGGCAATGGCAT
GAACTACCGTGGTACATGGAGTACAACCAAGTCTAGGGCGGAGTGTGCAA
ATTGGTCCGCTGCCCAGGCTGGTTTCTACGCGATCAAGTATCCGTGGGCC
AACATGGACAACAACTACTGTCGCAACCCTACCGGGCTGGAGCGGCCATT
TTGCTTGGTGGAAGATGGCAGCCAGGAGGATTGTGACGTCACTGCGTGTG
GTGCCGTCGGCTGCTGGGACTTGGGTCCACCAAACTACGGCAACAGAAGC
CCCATGAAGAGGTTCTACAACGTGGGAGAAAGGGTTGTGTACACCTGTAA
TAGGGGGTACTCCATTAAGTCAGGGCATCCCGGTGAAGTGAGGTGCACCA
AAGGAGGCCTCTGGGAATATGACAAGCCCAGCTGTTCAGAGAATATCGAG
CAAAAGCTAGCAGAGGAGCTGCTGGATGTGTACAGTCCGTCCCAGGCACC
TGTGACTGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000069 | genome | Sc0000069:1135078..1140280 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97191_cuf2 |
| Biotype | protein_coding |
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